Wall clock time and date at job start Mon Mar 30 2020 01:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99577 * 2 1 4 4 H 1.48505 * 109.47029 * 239.99581 * 3 2 1 5 5 H 1.48493 * 109.47389 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46983 * 120.00086 * 3 2 1 7 7 C 1.37873 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99812 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00014 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47399 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00406 * 190.00372 * 10 9 7 12 12 C 1.53000 * 109.47384 * 76.12739 * 11 10 9 13 13 O 1.42896 * 109.47161 * 64.22002 * 12 11 10 14 14 C 1.35905 * 117.00403 * 184.59547 * 13 12 11 15 15 C 1.38729 * 120.05451 * 175.13784 * 14 13 12 16 16 C 1.38153 * 119.94012 * 179.97438 * 15 14 13 17 17 C 1.38269 * 120.05351 * 359.97438 * 16 15 14 18 18 C 1.38267 * 120.11386 * 0.04269 * 17 16 15 19 19 C 1.38147 * 120.05261 * 359.95753 * 18 17 16 20 20 C 1.46893 * 111.00078 * 66.04359 * 10 9 7 21 21 C 1.53001 * 109.47566 * 199.39020 * 20 10 9 22 22 C 1.53001 * 117.49929 * 242.84143 * 21 20 10 23 23 C 1.52999 * 117.50163 * 174.21827 * 21 20 10 24 24 H 0.97003 * 120.00333 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47482 * 59.99787 * 9 7 2 26 26 H 1.08997 * 109.47724 * 300.00296 * 9 7 2 27 27 H 1.09001 * 109.47129 * 316.12955 * 11 10 9 28 28 H 1.09004 * 109.47271 * 196.13238 * 11 10 9 29 29 H 1.09002 * 109.47301 * 304.22067 * 12 11 10 30 30 H 1.09002 * 109.47243 * 184.22359 * 12 11 10 31 31 H 1.07994 * 120.03152 * 359.70144 * 15 14 13 32 32 H 1.07994 * 119.97137 * 179.97438 * 16 15 14 33 33 H 1.07995 * 119.94010 * 179.97438 * 17 16 15 34 34 H 1.08002 * 119.97012 * 179.97438 * 18 17 16 35 35 H 1.08005 * 120.02059 * 180.02562 * 19 18 17 36 36 H 1.09003 * 109.47281 * 319.39085 * 20 10 9 37 37 H 1.09008 * 109.47213 * 79.38969 * 20 10 9 38 38 H 1.09002 * 115.54823 * 28.54199 * 21 20 10 39 39 H 1.09008 * 117.49986 * 359.97438 * 22 21 20 40 40 H 1.09004 * 117.49746 * 145.01441 * 22 21 20 41 41 H 1.08998 * 117.49880 * 214.97852 * 23 21 20 42 42 H 1.08999 * 117.49669 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 1.5214 -4.8936 -0.2364 12 6 1.1673 -5.0138 -1.7200 13 8 2.3675 -5.0597 -2.4940 14 6 2.2299 -5.0696 -3.8461 15 6 3.3524 -5.0117 -4.6592 16 6 3.2098 -5.0225 -6.0333 17 6 1.9496 -5.0915 -6.5981 18 6 0.8293 -5.1490 -5.7898 19 6 0.9667 -5.1385 -4.4153 20 6 2.9700 -3.6534 1.2556 21 6 4.2435 -4.4766 1.0521 22 6 4.3985 -5.7544 1.8793 23 6 5.2465 -4.5236 2.2065 24 1 -0.4851 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8902 27 1 0.6095 -4.9340 0.3592 28 1 2.1780 -5.7159 0.0482 29 1 0.5726 -4.1519 -2.0226 30 1 0.5940 -5.9263 -1.8839 31 1 4.3366 -4.9537 -4.2185 32 1 4.0832 -4.9769 -6.6667 33 1 1.8402 -5.0994 -7.6725 34 1 -0.1539 -5.2025 -6.2335 35 1 0.0912 -5.1838 -3.7844 36 1 3.2368 -2.6382 1.5493 37 1 2.3632 -4.1103 2.0375 38 1 4.6429 -4.4818 0.0379 39 1 3.5934 -6.0084 2.5689 40 1 4.8999 -6.6005 1.4093 41 1 6.3057 -4.5600 1.9519 42 1 4.9988 -3.9684 3.1112 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081044593.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:39 Heat of formation + Delta-G solvation = -2.170531 kcal Electronic energy + Delta-G solvation = -21124.987554 eV Core-core repulsion = 18070.419664 eV Total energy + Delta-G solvation = -3054.567890 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.95903 -39.35656 -38.17050 -36.85989 -34.65128 -32.07821 -31.45307 -30.08344 -29.28605 -26.65449 -24.80004 -23.38089 -23.15031 -22.99676 -21.72929 -21.03224 -19.19206 -18.60506 -17.23275 -17.08165 -16.71000 -16.55336 -16.27566 -15.65113 -15.49571 -15.19157 -15.01424 -14.41813 -14.28375 -13.99959 -13.80821 -13.56764 -13.38589 -13.14094 -12.72793 -12.59548 -12.40513 -12.38487 -12.28502 -12.13667 -12.03779 -11.65277 -11.55993 -11.31913 -11.02893 -10.69416 -10.56964 -9.89454 -9.05836 -8.97437 -8.21396 -6.29967 0.45057 0.57810 1.38439 1.41571 1.49324 2.36303 2.39944 2.92236 2.96653 3.10418 3.22818 3.89023 3.96414 4.03387 4.10888 4.15055 4.17100 4.22177 4.30241 4.39145 4.47614 4.55461 4.57870 4.63845 4.79553 4.81001 4.82089 4.91910 4.93632 5.07395 5.14227 5.19405 5.28339 5.32314 5.46016 5.46952 5.53742 5.63973 5.64866 5.95829 6.06688 6.37855 6.56680 6.68218 6.85848 7.39086 8.89367 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.010728 B = 0.005940 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.321736 B = 4712.667105 C = 6334.526446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.209 3.791 10 N -0.535 5.535 11 C 0.056 3.944 12 C 0.075 3.925 13 O -0.313 6.313 14 C 0.111 3.889 15 C -0.175 4.175 16 C -0.082 4.082 17 C -0.168 4.168 18 C -0.087 4.087 19 C -0.228 4.228 20 C 0.098 3.902 21 C -0.153 4.153 22 C -0.169 4.169 23 C -0.174 4.174 24 H 0.264 0.736 25 H 0.005 0.995 26 H -0.037 1.037 27 H 0.051 0.949 28 H 0.093 0.907 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.128 0.872 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.145 0.855 35 H 0.126 0.874 36 H 0.059 0.941 37 H 0.025 0.975 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.342 -13.396 -6.353 15.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.194 4.194 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.076 0.924 9 C 0.083 3.917 10 N -0.259 5.259 11 C -0.072 4.072 12 C -0.001 4.001 13 O -0.226 6.226 14 C 0.065 3.935 15 C -0.193 4.193 16 C -0.100 4.100 17 C -0.185 4.185 18 C -0.105 4.105 19 C -0.247 4.247 20 C -0.030 4.030 21 C -0.171 4.171 22 C -0.206 4.206 23 C -0.211 4.211 24 H 0.073 0.927 25 H 0.023 0.977 26 H -0.019 1.019 27 H 0.069 0.931 28 H 0.112 0.888 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.146 0.854 32 H 0.172 0.828 33 H 0.169 0.831 34 H 0.163 0.837 35 H 0.144 0.856 36 H 0.078 0.922 37 H 0.043 0.957 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.683 -13.209 -6.598 15.821 hybrid contribution -0.898 1.055 0.827 1.614 sum 4.785 -12.154 -5.770 14.280 Atomic orbital electron populations 1.70064 1.07543 1.27860 1.51904 1.25840 0.95719 1.02924 0.94915 0.85529 0.78293 0.78349 0.79043 1.19760 1.20629 1.19112 1.21400 0.93430 0.91228 1.49791 0.92381 1.19391 0.90088 0.88911 0.93326 1.61926 1.26832 1.02417 1.34732 1.22153 0.98388 0.93419 0.93272 1.22833 0.85609 1.00634 0.90983 1.86119 1.34078 1.87893 1.14552 1.19496 0.94959 0.95807 0.83238 1.20700 0.97325 1.07419 0.93903 1.21305 0.98995 0.96542 0.93132 1.21405 0.92077 1.03890 1.01174 1.21286 1.00343 0.96644 0.92203 1.21481 0.96122 1.09623 0.97485 1.21483 0.92842 0.99211 0.89472 1.22171 0.97558 1.00662 0.96745 1.23083 1.02921 0.91765 1.02854 1.22997 0.97231 1.01767 0.99112 0.92719 0.97669 1.01922 0.93089 0.88840 0.94077 0.89731 0.85424 0.82789 0.83147 0.83710 0.85572 0.92214 0.95660 0.88661 0.88757 0.87717 0.87661 0.88943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 2 C 0.00 0.23 5.46 84.65 0.46 0.70 16 3 Si 0.96 45.30 29.54 68.60 2.03 47.33 16 4 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.52 -30.17 8.24 25.60 0.21 -29.96 16 8 H 0.06 3.36 7.31 -2.91 -0.02 3.34 16 9 C 0.21 11.26 4.55 85.56 0.39 11.65 16 10 N -0.53 -23.57 4.29 -900.80 -3.87 -27.43 16 11 C 0.06 2.00 5.20 86.30 0.45 2.45 16 12 C 0.07 2.60 4.93 71.98 0.36 2.95 16 13 O -0.31 -11.69 10.07 -92.49 -0.93 -12.62 16 14 C 0.11 3.75 6.68 22.50 0.15 3.90 16 15 C -0.17 -5.21 9.99 22.37 0.22 -4.99 16 16 C -0.08 -1.92 10.04 22.26 0.22 -1.70 16 17 C -0.17 -3.67 10.04 22.28 0.22 -3.45 16 18 C -0.09 -2.13 10.04 22.25 0.22 -1.91 16 19 C -0.23 -6.87 9.03 22.36 0.20 -6.66 16 20 C 0.10 3.88 5.07 86.31 0.44 4.32 16 21 C -0.15 -4.93 5.14 -10.79 -0.06 -4.99 16 22 C -0.17 -4.20 10.12 30.59 0.31 -3.89 16 23 C -0.17 -4.51 10.25 30.59 0.31 -4.20 16 24 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 25 H 0.01 0.31 6.60 -2.39 -0.02 0.29 16 26 H -0.04 -2.13 8.12 -2.39 -0.02 -2.15 16 27 H 0.05 1.78 7.99 -2.39 -0.02 1.76 16 28 H 0.09 2.97 7.23 -2.39 -0.02 2.95 16 29 H 0.04 1.63 6.17 -2.39 -0.01 1.62 16 30 H 0.08 2.34 7.72 -2.39 -0.02 2.32 16 31 H 0.13 3.66 8.06 -2.91 -0.02 3.63 16 32 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 33 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 34 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 35 H 0.13 3.62 6.33 -2.91 -0.02 3.60 16 36 H 0.06 2.69 6.58 -2.39 -0.02 2.68 16 37 H 0.03 0.95 7.74 -2.38 -0.02 0.93 16 38 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 39 H 0.09 2.23 8.03 -2.38 -0.02 2.21 16 40 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -67.43 346.21 2.61 -64.82 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.98 Total: 20.10 kcal Atomic # 6 Polarization: -39.90 SS G_CDS: 4.12 Total: -35.79 kcal Atomic # 7 Polarization: -80.26 SS G_CDS: -3.58 Total: -83.84 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -0.93 Total: -12.62 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -67.43 2.61 -64.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081044593.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.646 kcal (2) G-P(sol) polarization free energy of solvation -67.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds