Wall clock time and date at job start Mon Mar 30 2020 01:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99765 * 2 1 4 4 H 1.48502 * 109.46884 * 239.99808 * 3 2 1 5 5 H 1.48498 * 109.47242 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47006 * 120.00012 * 3 2 1 7 7 C 1.37875 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99524 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99987 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47085 * 180.02562 * 9 7 2 11 11 C 1.46898 * 111.00235 * 169.99848 * 10 9 7 12 12 C 1.52999 * 109.47447 * 196.63802 * 11 10 9 13 13 H 1.08994 * 109.47338 * 300.75436 * 12 11 10 14 14 O 1.42900 * 109.46992 * 60.75258 * 12 11 10 15 15 C 1.50695 * 109.47155 * 180.75242 * 12 11 10 16 16 C 1.38239 * 120.00296 * 279.72605 * 15 12 11 17 17 C 1.38229 * 120.00341 * 179.79021 * 16 15 12 18 18 C 1.38234 * 119.99716 * 0.44071 * 17 16 15 19 19 C 1.38239 * 120.00214 * 359.81206 * 18 17 16 20 20 C 1.38227 * 119.99964 * 359.97438 * 19 18 17 21 21 C 1.46903 * 111.00061 * 293.95614 * 10 9 7 22 22 C 1.52998 * 109.46889 * 294.47062 * 21 10 9 23 23 C 1.53003 * 117.49966 * 243.02492 * 22 21 10 24 24 C 1.52995 * 117.49949 * 174.36295 * 22 21 10 25 25 H 0.97002 * 119.99887 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47077 * 59.99845 * 9 7 2 27 27 H 1.09006 * 109.46944 * 299.99910 * 9 7 2 28 28 H 1.09002 * 109.46946 * 316.63919 * 11 10 9 29 29 H 1.09003 * 109.46828 * 76.63884 * 11 10 9 30 30 H 0.96702 * 114.00080 * 59.99633 * 14 12 11 31 31 H 1.08005 * 119.99537 * 0.02562 * 16 15 12 32 32 H 1.07997 * 119.99943 * 180.27838 * 17 16 15 33 33 H 1.08006 * 120.00202 * 179.83616 * 18 17 16 34 34 H 1.08002 * 119.99885 * 179.97438 * 19 18 17 35 35 H 1.08001 * 120.00467 * 179.97438 * 20 19 18 36 36 H 1.08997 * 109.47135 * 54.46889 * 21 10 9 37 37 H 1.08996 * 109.46889 * 174.47057 * 21 10 9 38 38 H 1.09003 * 115.54881 * 28.68488 * 22 21 10 39 39 H 1.09008 * 117.49817 * 359.97438 * 23 22 21 40 40 H 1.08988 * 117.50624 * 145.01978 * 23 22 21 41 41 H 1.09000 * 117.50005 * 214.97795 * 24 22 21 42 42 H 1.08995 * 117.49881 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5212 -4.8935 0.2376 12 6 2.5473 -5.9543 0.6411 13 1 3.2848 -6.0671 -0.1535 14 8 3.2024 -5.5498 1.8450 15 6 1.8476 -7.2696 0.8674 16 6 1.1919 -7.5073 2.0610 17 6 0.5463 -8.7121 2.2669 18 6 0.5642 -9.6828 1.2829 19 6 1.2243 -9.4472 0.0914 20 6 1.8661 -8.2407 -0.1163 21 6 2.9710 -3.6540 -1.2538 22 6 2.0283 -3.9665 -2.4177 23 6 2.2654 -5.2661 -3.1895 24 6 2.6117 -3.9202 -3.8313 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5566 -0.8902 27 1 0.6247 -2.5570 0.8897 28 1 0.7914 -4.7711 1.0379 29 1 1.0122 -5.2083 -0.6734 30 1 2.6055 -5.4298 2.5963 31 1 1.1807 -6.7501 2.8310 32 1 0.0302 -8.8960 3.1976 33 1 0.0620 -10.6252 1.4448 34 1 1.2386 -10.2058 -0.6772 35 1 2.3822 -8.0567 -1.0470 36 1 3.4450 -2.6866 -1.4198 37 1 3.7365 -4.4272 -1.1886 38 1 0.9967 -3.6393 -2.2879 39 1 3.0933 -5.8983 -2.8684 40 1 1.3900 -5.7936 -3.5679 41 1 1.9638 -3.5629 -4.6317 42 1 3.6669 -3.6668 -3.9322 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081514702.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:26 Heat of formation + Delta-G solvation = 3.133162 kcal Electronic energy + Delta-G solvation = -21476.375058 eV Core-core repulsion = 18422.037154 eV Total energy + Delta-G solvation = -3054.337904 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.66872 -38.15496 -36.47969 -34.77107 -32.47911 -31.54735 -30.87160 -28.30195 -27.02971 -25.17162 -22.88317 -22.59578 -22.02854 -21.57336 -20.84424 -19.09416 -17.45365 -16.36370 -15.84099 -15.69943 -15.36303 -15.05582 -14.69537 -14.36012 -14.02870 -13.64970 -13.59014 -13.38398 -12.98122 -12.68383 -12.19688 -11.78162 -11.65914 -11.40520 -11.29549 -11.15690 -11.08444 -10.97876 -10.78476 -10.66898 -10.43255 -10.04935 -9.99656 -9.58777 -9.40188 -9.13830 -8.95204 -8.66501 -8.40629 -7.14812 -6.00120 -4.00503 1.31462 1.36951 3.35796 3.39466 3.42946 3.73925 4.18668 4.43379 4.63698 4.78768 4.85116 4.93504 5.04930 5.12575 5.21889 5.31620 5.35822 5.36631 5.43176 5.52960 5.60309 5.66227 5.84743 5.94549 5.95193 5.96716 6.16711 6.18894 6.26044 6.37042 6.39513 6.43026 6.45937 6.51631 6.67063 6.88222 6.96061 7.29928 7.38677 7.82279 7.96842 8.12480 8.23164 8.57501 9.06641 9.63292 11.10694 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020157 B = 0.004739 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.729897 B = 5907.127307 C = 6698.127377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.502 4.502 8 H 0.062 0.938 9 C 0.191 3.809 10 N -0.520 5.520 11 C 0.028 3.972 12 C 0.153 3.847 13 H 0.101 0.899 14 O -0.541 6.541 15 C -0.105 4.105 16 C -0.112 4.112 17 C -0.119 4.119 18 C -0.128 4.128 19 C -0.121 4.121 20 C -0.110 4.110 21 C 0.094 3.906 22 C -0.171 4.171 23 C -0.190 4.190 24 C -0.178 4.178 25 H 0.261 0.739 26 H -0.004 1.004 27 H 0.026 0.974 28 H 0.067 0.933 29 H 0.041 0.959 30 H 0.369 0.631 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.087 0.913 37 H 0.055 0.945 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.762 -17.108 -0.829 17.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.541 4.541 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.242 5.242 11 C -0.101 4.101 12 C 0.093 3.907 13 H 0.118 0.882 14 O -0.346 6.346 15 C -0.106 4.106 16 C -0.130 4.130 17 C -0.137 4.137 18 C -0.146 4.146 19 C -0.139 4.139 20 C -0.129 4.129 21 C -0.035 4.035 22 C -0.191 4.191 23 C -0.227 4.227 24 C -0.216 4.216 25 H 0.070 0.930 26 H 0.014 0.986 27 H 0.044 0.956 28 H 0.086 0.914 29 H 0.059 0.941 30 H 0.216 0.784 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.105 0.895 37 H 0.073 0.927 38 H 0.125 0.875 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.462 -16.911 -0.798 17.108 hybrid contribution -0.915 0.774 -0.468 1.287 sum 1.547 -16.137 -1.266 16.260 Atomic orbital electron populations 1.69950 1.06035 1.26774 1.51283 1.24959 0.94819 0.99200 0.95537 0.86589 0.79455 0.82878 0.78666 1.20312 1.21460 1.20167 1.21103 0.93451 0.89865 1.49689 0.91934 1.19768 0.90214 0.87367 0.95987 1.62264 1.27981 1.01934 1.32002 1.22705 0.95336 0.91539 1.00495 1.20820 0.94034 0.87753 0.88044 0.88163 1.86615 1.37528 1.90437 1.19971 1.20781 0.98167 0.97083 0.94544 1.20948 0.97458 0.97418 0.97135 1.21106 0.99536 0.93832 0.99188 1.21119 1.00053 0.99241 0.94150 1.21116 0.98140 0.97190 0.97441 1.21014 0.99704 0.93299 0.98844 1.21739 0.94459 1.01706 0.85618 1.23196 1.02462 0.99626 0.93788 1.22997 1.02665 0.90965 1.06059 1.22821 1.01432 1.00556 0.96759 0.92975 0.98641 0.95550 0.91449 0.94117 0.78410 0.86036 0.86151 0.86371 0.86243 0.86069 0.89492 0.92685 0.87548 0.89454 0.89763 0.89511 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.50 -13.95 8.44 -34.44 -0.29 -14.24 16 8 H 0.06 1.73 7.14 -52.49 -0.37 1.36 16 9 C 0.19 4.86 4.56 -4.98 -0.02 4.84 16 10 N -0.52 -10.85 4.53 -236.07 -1.07 -11.92 16 11 C 0.03 0.49 4.46 -3.83 -0.02 0.48 16 12 C 0.15 2.31 3.22 -27.89 -0.09 2.22 16 13 H 0.10 1.53 6.66 -51.93 -0.35 1.18 16 14 O -0.54 -8.74 13.06 -35.23 -0.46 -9.20 16 15 C -0.10 -1.39 4.97 -104.62 -0.52 -1.91 16 16 C -0.11 -1.36 9.32 -39.58 -0.37 -1.73 16 17 C -0.12 -1.28 10.05 -39.59 -0.40 -1.68 16 18 C -0.13 -1.32 10.05 -39.58 -0.40 -1.71 16 19 C -0.12 -1.29 10.05 -39.59 -0.40 -1.69 16 20 C -0.11 -1.33 9.67 -39.58 -0.38 -1.71 16 21 C 0.09 1.78 5.30 -3.82 -0.02 1.76 16 22 C -0.17 -2.98 3.94 -90.62 -0.36 -3.33 16 23 C -0.19 -2.65 10.10 -26.69 -0.27 -2.92 16 24 C -0.18 -2.66 10.25 -26.69 -0.27 -2.94 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.00 -0.11 6.14 -51.93 -0.32 -0.43 16 27 H 0.03 0.72 7.85 -51.93 -0.41 0.32 16 28 H 0.07 1.20 7.79 -51.93 -0.40 0.79 16 29 H 0.04 0.71 6.52 -51.93 -0.34 0.37 16 30 H 0.37 4.93 7.50 45.56 0.34 5.27 16 31 H 0.12 1.32 6.78 -52.48 -0.36 0.96 16 32 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.12 1.31 8.04 -52.49 -0.42 0.89 16 36 H 0.09 1.85 6.73 -51.93 -0.35 1.50 16 37 H 0.05 0.95 6.51 -51.93 -0.34 0.61 16 38 H 0.11 2.14 6.26 -51.93 -0.32 1.81 16 39 H 0.09 1.11 8.03 -51.92 -0.42 0.69 16 40 H 0.08 1.10 8.14 -51.94 -0.42 0.68 16 41 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 340.43 15.07 5.13 5.13 Total: -1.00 -30.52 340.43 -10.32 -40.84 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -5.73 Total: 7.42 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: -3.90 Total: -23.09 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: -0.33 Total: -37.79 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.46 Total: -9.20 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.52 -10.32 -40.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514702.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.970 kcal (2) G-P(sol) polarization free energy of solvation -30.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds