Wall clock time and date at job start Mon Mar 30 2020 01:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99765 * 2 1 4 4 H 1.48502 * 109.46884 * 239.99808 * 3 2 1 5 5 H 1.48498 * 109.47242 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47006 * 120.00012 * 3 2 1 7 7 C 1.37875 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99524 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99987 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47085 * 180.02562 * 9 7 2 11 11 C 1.46898 * 111.00235 * 169.99848 * 10 9 7 12 12 C 1.52999 * 109.47447 * 196.63802 * 11 10 9 13 13 H 1.08994 * 109.47338 * 300.75436 * 12 11 10 14 14 O 1.42900 * 109.46992 * 60.75258 * 12 11 10 15 15 C 1.50695 * 109.47155 * 180.75242 * 12 11 10 16 16 C 1.38239 * 120.00296 * 279.72605 * 15 12 11 17 17 C 1.38229 * 120.00341 * 179.79021 * 16 15 12 18 18 C 1.38234 * 119.99716 * 0.44071 * 17 16 15 19 19 C 1.38239 * 120.00214 * 359.81206 * 18 17 16 20 20 C 1.38227 * 119.99964 * 359.97438 * 19 18 17 21 21 C 1.46903 * 111.00061 * 293.95614 * 10 9 7 22 22 C 1.52998 * 109.46889 * 294.47062 * 21 10 9 23 23 C 1.53003 * 117.49966 * 243.02492 * 22 21 10 24 24 C 1.52995 * 117.49949 * 174.36295 * 22 21 10 25 25 H 0.97002 * 119.99887 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47077 * 59.99845 * 9 7 2 27 27 H 1.09006 * 109.46944 * 299.99910 * 9 7 2 28 28 H 1.09002 * 109.46946 * 316.63919 * 11 10 9 29 29 H 1.09003 * 109.46828 * 76.63884 * 11 10 9 30 30 H 0.96702 * 114.00080 * 59.99633 * 14 12 11 31 31 H 1.08005 * 119.99537 * 0.02562 * 16 15 12 32 32 H 1.07997 * 119.99943 * 180.27838 * 17 16 15 33 33 H 1.08006 * 120.00202 * 179.83616 * 18 17 16 34 34 H 1.08002 * 119.99885 * 179.97438 * 19 18 17 35 35 H 1.08001 * 120.00467 * 179.97438 * 20 19 18 36 36 H 1.08997 * 109.47135 * 54.46889 * 21 10 9 37 37 H 1.08996 * 109.46889 * 174.47057 * 21 10 9 38 38 H 1.09003 * 115.54881 * 28.68488 * 22 21 10 39 39 H 1.09008 * 117.49817 * 359.97438 * 23 22 21 40 40 H 1.08988 * 117.50624 * 145.01978 * 23 22 21 41 41 H 1.09000 * 117.50005 * 214.97795 * 24 22 21 42 42 H 1.08995 * 117.49881 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5212 -4.8935 0.2376 12 6 2.5473 -5.9543 0.6411 13 1 3.2848 -6.0671 -0.1535 14 8 3.2024 -5.5498 1.8450 15 6 1.8476 -7.2696 0.8674 16 6 1.1919 -7.5073 2.0610 17 6 0.5463 -8.7121 2.2669 18 6 0.5642 -9.6828 1.2829 19 6 1.2243 -9.4472 0.0914 20 6 1.8661 -8.2407 -0.1163 21 6 2.9710 -3.6540 -1.2538 22 6 2.0283 -3.9665 -2.4177 23 6 2.2654 -5.2661 -3.1895 24 6 2.6117 -3.9202 -3.8313 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5566 -0.8902 27 1 0.6247 -2.5570 0.8897 28 1 0.7914 -4.7711 1.0379 29 1 1.0122 -5.2083 -0.6734 30 1 2.6055 -5.4298 2.5963 31 1 1.1807 -6.7501 2.8310 32 1 0.0302 -8.8960 3.1976 33 1 0.0620 -10.6252 1.4448 34 1 1.2386 -10.2058 -0.6772 35 1 2.3822 -8.0567 -1.0470 36 1 3.4450 -2.6866 -1.4198 37 1 3.7365 -4.4272 -1.1886 38 1 0.9967 -3.6393 -2.2879 39 1 3.0933 -5.8983 -2.8684 40 1 1.3900 -5.7936 -3.5679 41 1 1.9638 -3.5629 -4.6317 42 1 3.6669 -3.6668 -3.9322 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081514702.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:25 Heat of formation + Delta-G solvation = -16.134223 kcal Electronic energy + Delta-G solvation = -21477.210555 eV Core-core repulsion = 18422.037154 eV Total energy + Delta-G solvation = -3055.173401 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.73012 -39.47239 -37.65916 -36.33314 -34.52010 -32.62158 -31.71840 -29.89134 -28.68022 -26.76911 -24.40481 -23.51988 -23.19636 -23.08442 -21.95399 -20.61244 -18.53277 -18.32916 -17.20671 -16.88727 -16.66025 -16.54943 -16.05503 -15.64925 -15.44972 -14.95668 -14.81042 -14.43630 -14.17707 -14.10884 -13.68467 -13.39875 -13.01741 -12.89879 -12.66114 -12.62400 -12.55383 -12.38945 -12.28644 -12.06432 -11.92739 -11.73687 -11.52988 -11.13431 -10.82895 -10.70588 -10.55830 -9.79878 -9.63049 -8.85914 -8.17956 -6.26649 0.42871 0.52324 1.40761 1.43715 1.51399 2.41287 2.83963 2.93318 3.14519 3.29360 3.65257 3.81444 3.91796 3.95985 4.07033 4.15209 4.17784 4.19558 4.31947 4.33810 4.47560 4.62614 4.67310 4.75703 4.78831 4.85746 4.93597 4.99299 5.02707 5.08585 5.18812 5.24298 5.26716 5.32212 5.43879 5.58192 5.63436 5.67586 5.71148 6.08687 6.13025 6.38405 6.65833 6.85814 6.90049 7.42286 8.92591 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020157 B = 0.004739 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.729897 B = 5907.127307 C = 6698.127377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.004 3.996 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.517 4.517 8 H 0.059 0.941 9 C 0.210 3.790 10 N -0.528 5.528 11 C 0.035 3.965 12 C 0.168 3.832 13 H 0.101 0.899 14 O -0.558 6.558 15 C -0.124 4.124 16 C -0.127 4.127 17 C -0.126 4.126 18 C -0.127 4.127 19 C -0.124 4.124 20 C -0.121 4.121 21 C 0.100 3.900 22 C -0.200 4.200 23 C -0.158 4.158 24 C -0.173 4.173 25 H 0.263 0.737 26 H -0.028 1.028 27 H -0.004 1.004 28 H 0.055 0.945 29 H 0.041 0.959 30 H 0.378 0.622 31 H 0.125 0.875 32 H 0.141 0.859 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.132 0.868 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.688 -18.969 -1.488 19.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.194 4.194 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.555 4.555 8 H 0.077 0.923 9 C 0.084 3.916 10 N -0.250 5.250 11 C -0.093 4.093 12 C 0.108 3.892 13 H 0.119 0.881 14 O -0.364 6.364 15 C -0.125 4.125 16 C -0.145 4.145 17 C -0.144 4.144 18 C -0.145 4.145 19 C -0.142 4.142 20 C -0.139 4.139 21 C -0.029 4.029 22 C -0.220 4.220 23 C -0.194 4.194 24 C -0.210 4.210 25 H 0.072 0.928 26 H -0.011 1.011 27 H 0.014 0.986 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.227 0.773 31 H 0.143 0.857 32 H 0.159 0.841 33 H 0.163 0.837 34 H 0.163 0.837 35 H 0.150 0.850 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.126 0.874 40 H 0.116 0.884 41 H 0.110 0.890 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.398 -18.794 -1.457 19.154 hybrid contribution -1.245 1.256 -0.250 1.786 sum 2.153 -17.538 -1.707 17.752 Atomic orbital electron populations 1.70079 1.07623 1.27742 1.52156 1.25833 0.95659 1.02906 0.94992 0.85517 0.78229 0.78320 0.79051 1.19342 1.20888 1.19464 1.21401 0.93426 0.91165 1.49513 0.92283 1.19362 0.90180 0.88798 0.93306 1.62164 1.27054 1.02257 1.33523 1.22708 0.95917 0.90643 1.00070 1.20617 0.93115 0.87840 0.87619 0.88128 1.86565 1.38505 1.90646 1.20702 1.20617 0.99564 0.96515 0.95784 1.21138 0.97874 0.98408 0.97096 1.21414 0.99227 0.93350 1.00365 1.21524 0.99280 1.00049 0.93648 1.21458 0.97342 0.97141 0.98265 1.21232 1.00070 0.93631 0.98954 1.21634 0.94801 1.00916 0.85506 1.22865 1.00304 1.03942 0.94884 1.23080 1.03533 0.89953 1.02872 1.22938 1.01990 1.01295 0.94821 0.92848 1.01079 0.98587 0.92665 0.94047 0.77320 0.85743 0.84129 0.83668 0.83697 0.84976 0.92352 0.90435 0.91083 0.87362 0.88428 0.89027 0.87967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.92 13.29 21.45 0.28 -56.64 16 2 C 0.00 0.22 5.46 84.65 0.46 0.68 16 3 Si 0.96 45.08 29.54 68.60 2.03 47.10 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.52 -29.72 8.44 25.60 0.22 -29.50 16 8 H 0.06 3.37 7.14 -2.91 -0.02 3.35 16 9 C 0.21 11.27 4.56 85.56 0.39 11.66 16 10 N -0.53 -22.90 4.53 -900.80 -4.08 -26.98 16 11 C 0.04 1.27 4.46 86.30 0.39 1.65 16 12 C 0.17 5.01 3.22 29.85 0.10 5.10 16 13 H 0.10 2.95 6.66 -2.39 -0.02 2.94 16 14 O -0.56 -18.06 13.06 -148.98 -1.95 -20.00 16 15 C -0.12 -3.17 4.97 -19.86 -0.10 -3.27 16 16 C -0.13 -3.00 9.32 22.27 0.21 -2.79 16 17 C -0.13 -2.48 10.05 22.27 0.22 -2.25 16 18 C -0.13 -2.25 10.05 22.27 0.22 -2.02 16 19 C -0.12 -2.29 10.05 22.27 0.22 -2.07 16 20 C -0.12 -2.67 9.67 22.27 0.22 -2.45 16 21 C 0.10 3.86 5.30 86.30 0.46 4.32 16 22 C -0.20 -7.03 3.94 -10.79 -0.04 -7.07 16 23 C -0.16 -4.04 10.10 30.62 0.31 -3.73 16 24 C -0.17 -4.93 10.25 30.62 0.31 -4.62 16 25 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 26 H -0.03 -1.64 6.14 -2.39 -0.01 -1.65 16 27 H 0.00 -0.23 7.85 -2.38 -0.02 -0.25 16 28 H 0.05 2.08 7.79 -2.39 -0.02 2.06 16 29 H 0.04 1.48 6.52 -2.39 -0.02 1.46 16 30 H 0.38 10.33 7.50 -74.06 -0.56 9.78 16 31 H 0.12 2.71 6.78 -2.91 -0.02 2.69 16 32 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 33 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 34 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.13 2.51 8.04 -2.91 -0.02 2.49 16 36 H 0.06 2.55 6.73 -2.39 -0.02 2.54 16 37 H 0.08 2.61 6.51 -2.39 -0.02 2.60 16 38 H 0.07 3.02 6.26 -2.39 -0.01 3.00 16 39 H 0.11 2.36 8.03 -2.38 -0.02 2.34 16 40 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -67.60 340.43 0.32 -67.28 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: 0.45 Total: 25.59 kcal Atomic # 6 Polarization: -39.94 SS G_CDS: 3.58 Total: -36.36 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -3.80 Total: -83.62 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -1.95 Total: -20.00 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -67.60 0.32 -67.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514702.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.150 kcal (2) G-P(sol) polarization free energy of solvation -67.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds