Wall clock time and date at job start Mon Mar 30 2020 01:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99734 * 2 1 4 4 H 1.48493 * 109.47007 * 270.00018 * 3 2 1 5 5 H 1.48502 * 109.47004 * 30.00330 * 3 2 1 6 6 H 1.48497 * 109.46919 * 149.99772 * 3 2 1 7 7 C 1.37871 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00033 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99993 * 179.97438 * 7 2 1 10 10 N 1.46905 * 109.46858 * 180.02562 * 9 7 2 11 11 C 1.46897 * 110.99617 * 170.00329 * 10 9 7 12 12 C 1.53006 * 109.46956 * 288.14935 * 11 10 9 13 13 H 1.08997 * 109.47608 * 58.32175 * 12 11 10 14 14 O 1.42909 * 109.46878 * 298.32243 * 12 11 10 15 15 C 1.50699 * 109.47258 * 178.32722 * 12 11 10 16 16 C 1.38237 * 120.00164 * 84.72118 * 15 12 11 17 17 C 1.38240 * 119.99980 * 179.80968 * 16 15 12 18 18 C 1.38233 * 119.99671 * 0.40609 * 17 16 15 19 19 C 1.38233 * 120.00395 * 359.84392 * 18 17 16 20 20 C 1.38234 * 119.99889 * 264.99757 * 15 12 11 21 21 C 1.46892 * 110.99974 * 293.95300 * 10 9 7 22 22 C 1.53000 * 109.47277 * 164.17304 * 21 10 9 23 23 C 1.52995 * 117.51964 * 115.70661 * 22 21 10 24 24 C 1.52995 * 60.00266 * 107.48439 * 23 22 21 25 25 H 0.97001 * 119.99834 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47228 * 60.00070 * 9 7 2 27 27 H 1.08998 * 109.47251 * 300.00278 * 9 7 2 28 28 H 1.08996 * 109.47715 * 48.14248 * 11 10 9 29 29 H 1.09001 * 109.47263 * 168.15058 * 11 10 9 30 30 H 0.96693 * 114.00046 * 305.82454 * 14 12 11 31 31 H 1.08001 * 119.99935 * 0.02562 * 16 15 12 32 32 H 1.08000 * 119.99845 * 180.22994 * 17 16 15 33 33 H 1.08005 * 119.99867 * 179.83461 * 18 17 16 34 34 H 1.07997 * 119.99841 * 179.97438 * 19 18 17 35 35 H 1.07998 * 119.99989 * 359.97438 * 20 15 12 36 36 H 1.09000 * 109.47392 * 44.17127 * 21 10 9 37 37 H 1.08997 * 109.47521 * 284.17325 * 21 10 9 38 38 H 1.09004 * 115.54626 * 330.00755 * 22 21 10 39 39 H 1.08999 * 117.49879 * 214.97462 * 23 22 21 40 40 H 1.08996 * 117.50082 * 359.97438 * 23 22 21 41 41 H 1.08999 * 117.50440 * 252.51402 * 24 23 22 42 42 H 1.08997 * 117.49891 * 107.48636 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 7 4.0013 -2.5790 0.0001 11 6 5.4500 -2.6251 -0.2386 12 6 5.7377 -2.2724 -1.6993 13 1 5.3400 -1.2816 -1.9191 14 8 5.1163 -3.2352 -2.5531 15 6 7.2263 -2.2795 -1.9340 16 6 7.8745 -3.4652 -2.2253 17 6 9.2394 -3.4711 -2.4445 18 6 9.9573 -2.2926 -2.3641 19 6 9.3100 -1.1077 -2.0678 20 6 7.9445 -1.1012 -1.8525 21 6 3.6523 -3.2606 1.2536 22 6 3.8141 -4.7715 1.0748 23 6 4.8817 -5.4726 1.9171 24 6 3.3997 -5.6695 2.2422 25 1 -0.4850 0.8401 0.0004 26 1 3.8753 -0.6795 0.8894 27 1 3.8746 -0.6807 -0.8905 28 1 5.9487 -1.9079 0.4133 29 1 5.8214 -3.6278 -0.0270 30 1 5.3560 -4.1505 -2.3537 31 1 7.3140 -4.3865 -2.2850 32 1 9.7451 -4.3970 -2.6757 33 1 11.0241 -2.2976 -2.5327 34 1 9.8711 -0.1871 -2.0046 35 1 7.4388 -0.1755 -1.6209 36 1 2.6185 -3.0343 1.5147 37 1 4.3118 -2.9163 2.0502 38 1 3.6427 -5.1464 0.0658 39 1 5.4125 -6.3089 1.4623 40 1 5.4693 -4.8576 2.5986 41 1 3.0119 -5.1839 3.1377 42 1 2.9555 -6.6352 2.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081514703.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:29 Heat of formation + Delta-G solvation = 5.722495 kcal Electronic energy + Delta-G solvation = -21385.811064 eV Core-core repulsion = 18331.585442 eV Total energy + Delta-G solvation = -3054.225623 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.65355 -38.02598 -36.63525 -35.06214 -32.42141 -31.59906 -30.87611 -28.49616 -27.86628 -24.90250 -23.07736 -22.54796 -22.13193 -21.14345 -20.35878 -19.67383 -17.50390 -16.90050 -15.87257 -15.72558 -15.40935 -15.11530 -14.71941 -14.13335 -14.02373 -13.81743 -13.66679 -13.40215 -12.97938 -12.63551 -12.48655 -12.27022 -11.92527 -11.67788 -11.33986 -11.30569 -11.17331 -10.95606 -10.90634 -10.52302 -10.41022 -9.96839 -9.84096 -9.74171 -9.52490 -9.20380 -8.96573 -8.69954 -8.54112 -7.37296 -6.03322 -4.00037 1.30100 1.35504 3.28538 3.35859 3.36397 3.72073 4.08748 4.42398 4.46347 4.74578 4.84718 4.90113 4.93962 5.06206 5.19403 5.22618 5.28280 5.34819 5.39676 5.47007 5.57584 5.60399 5.77401 5.84635 5.93157 5.93682 5.98871 6.08295 6.18264 6.23545 6.30478 6.40401 6.44516 6.46091 6.65042 6.74862 6.87295 6.94760 6.96482 7.60203 7.86972 8.02098 8.04295 8.67234 9.06457 9.58404 11.09858 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012680 B = 0.006173 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.706284 B = 4534.914167 C = 6196.314661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.871 3.129 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.506 4.506 8 H 0.082 0.918 9 C 0.161 3.839 10 N -0.514 5.514 11 C 0.029 3.971 12 C 0.150 3.850 13 H 0.108 0.892 14 O -0.534 6.534 15 C -0.104 4.104 16 C -0.110 4.110 17 C -0.120 4.120 18 C -0.128 4.128 19 C -0.119 4.119 20 C -0.112 4.112 21 C 0.091 3.909 22 C -0.132 4.132 23 C -0.194 4.194 24 C -0.181 4.181 25 H 0.263 0.737 26 H -0.014 1.014 27 H 0.025 0.975 28 H 0.031 0.969 29 H 0.072 0.928 30 H 0.364 0.636 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.097 0.903 37 H 0.020 0.980 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.934 -7.690 -0.687 19.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.132 4.132 3 Si 0.698 3.302 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.544 4.544 8 H 0.100 0.900 9 C 0.035 3.965 10 N -0.237 5.237 11 C -0.100 4.100 12 C 0.090 3.910 13 H 0.126 0.874 14 O -0.338 6.338 15 C -0.105 4.105 16 C -0.128 4.128 17 C -0.138 4.138 18 C -0.146 4.146 19 C -0.137 4.137 20 C -0.130 4.130 21 C -0.037 4.037 22 C -0.151 4.151 23 C -0.231 4.231 24 C -0.219 4.219 25 H 0.073 0.927 26 H 0.004 0.996 27 H 0.043 0.957 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.210 0.790 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.115 0.885 37 H 0.038 0.962 38 H 0.128 0.872 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.110 0.890 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 17.262 -7.260 -1.331 18.774 hybrid contribution 1.164 0.958 0.951 1.783 sum 18.427 -6.302 -0.380 19.478 Atomic orbital electron populations 1.69893 1.06075 1.26741 1.51168 1.24883 0.94702 0.98703 0.94950 0.86931 0.80323 0.84316 0.78619 1.20093 1.21205 1.19354 1.21015 0.88611 0.94743 1.50011 0.89964 1.20221 0.97288 0.84196 0.94840 1.61808 1.09367 1.18827 1.33689 1.22741 0.91315 1.00759 0.95178 1.20875 0.85787 0.94461 0.89849 0.87430 1.86698 1.71593 1.17881 1.57588 1.20800 0.97299 0.93703 0.98739 1.20903 0.94466 0.97602 0.99825 1.21096 0.94214 0.98086 1.00424 1.21115 0.99678 0.92919 1.00883 1.21124 0.94553 0.98087 0.99982 1.21068 0.94260 0.97893 0.99816 1.21620 1.02380 0.89892 0.89839 1.22427 1.01790 0.94572 0.96299 1.23030 0.91975 1.03463 1.04593 1.22889 0.97150 1.01294 1.00522 0.92705 0.99613 0.95691 0.95062 0.91001 0.78955 0.86146 0.86220 0.86370 0.86180 0.85936 0.88497 0.96231 0.87181 0.89527 0.89514 0.89031 0.89178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.58 13.96 55.43 0.77 -26.80 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 21.46 27.47 -169.99 -4.67 16.79 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.51 -14.27 8.84 -34.44 -0.30 -14.57 16 8 H 0.08 2.54 7.50 -52.49 -0.39 2.14 16 9 C 0.16 3.84 3.64 -4.97 -0.02 3.83 16 10 N -0.51 -10.36 4.31 -236.07 -1.02 -11.38 16 11 C 0.03 0.48 4.40 -3.82 -0.02 0.46 16 12 C 0.15 2.41 3.23 -27.88 -0.09 2.32 16 13 H 0.11 1.95 6.45 -51.93 -0.33 1.62 16 14 O -0.53 -8.83 12.96 -35.23 -0.46 -9.29 16 15 C -0.10 -1.43 5.00 -104.62 -0.52 -1.95 16 16 C -0.11 -1.30 9.34 -39.58 -0.37 -1.67 16 17 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 18 C -0.13 -1.32 10.05 -39.59 -0.40 -1.72 16 19 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 20 C -0.11 -1.46 9.68 -39.58 -0.38 -1.84 16 21 C 0.09 1.70 5.09 -3.83 -0.02 1.68 16 22 C -0.13 -2.03 4.97 -90.62 -0.45 -2.48 16 23 C -0.19 -2.45 10.04 -26.74 -0.27 -2.71 16 24 C -0.18 -2.41 10.25 -26.73 -0.27 -2.68 16 25 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 26 H -0.01 -0.33 7.18 -51.93 -0.37 -0.71 16 27 H 0.03 0.60 5.80 -51.93 -0.30 0.30 16 28 H 0.03 0.53 8.05 -51.93 -0.42 0.11 16 29 H 0.07 1.06 7.05 -51.93 -0.37 0.69 16 30 H 0.36 4.62 7.60 45.56 0.35 4.96 16 31 H 0.12 1.21 6.76 -52.49 -0.35 0.86 16 32 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 35 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.10 2.10 6.59 -51.93 -0.34 1.75 16 37 H 0.02 0.35 7.79 -51.93 -0.40 -0.05 16 38 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.09 1.09 8.03 -51.93 -0.42 0.67 16 41 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 341.44 15.07 5.15 5.15 Total: -1.00 -31.40 341.44 -10.14 -41.54 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -5.91 Total: 6.83 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: -4.01 Total: -22.84 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: -0.24 Total: -38.18 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.46 Total: -9.29 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.40 -10.14 -41.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514703.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.265 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds