Wall clock time and date at job start Mon Mar 30 2020 01:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99734 * 2 1 4 4 H 1.48493 * 109.47007 * 270.00018 * 3 2 1 5 5 H 1.48502 * 109.47004 * 30.00330 * 3 2 1 6 6 H 1.48497 * 109.46919 * 149.99772 * 3 2 1 7 7 C 1.37871 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00033 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99993 * 179.97438 * 7 2 1 10 10 N 1.46905 * 109.46858 * 180.02562 * 9 7 2 11 11 C 1.46897 * 110.99617 * 170.00329 * 10 9 7 12 12 C 1.53006 * 109.46956 * 288.14935 * 11 10 9 13 13 H 1.08997 * 109.47608 * 58.32175 * 12 11 10 14 14 O 1.42909 * 109.46878 * 298.32243 * 12 11 10 15 15 C 1.50699 * 109.47258 * 178.32722 * 12 11 10 16 16 C 1.38237 * 120.00164 * 84.72118 * 15 12 11 17 17 C 1.38240 * 119.99980 * 179.80968 * 16 15 12 18 18 C 1.38233 * 119.99671 * 0.40609 * 17 16 15 19 19 C 1.38233 * 120.00395 * 359.84392 * 18 17 16 20 20 C 1.38234 * 119.99889 * 264.99757 * 15 12 11 21 21 C 1.46892 * 110.99974 * 293.95300 * 10 9 7 22 22 C 1.53000 * 109.47277 * 164.17304 * 21 10 9 23 23 C 1.52995 * 117.51964 * 115.70661 * 22 21 10 24 24 C 1.52995 * 60.00266 * 107.48439 * 23 22 21 25 25 H 0.97001 * 119.99834 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47228 * 60.00070 * 9 7 2 27 27 H 1.08998 * 109.47251 * 300.00278 * 9 7 2 28 28 H 1.08996 * 109.47715 * 48.14248 * 11 10 9 29 29 H 1.09001 * 109.47263 * 168.15058 * 11 10 9 30 30 H 0.96693 * 114.00046 * 305.82454 * 14 12 11 31 31 H 1.08001 * 119.99935 * 0.02562 * 16 15 12 32 32 H 1.08000 * 119.99845 * 180.22994 * 17 16 15 33 33 H 1.08005 * 119.99867 * 179.83461 * 18 17 16 34 34 H 1.07997 * 119.99841 * 179.97438 * 19 18 17 35 35 H 1.07998 * 119.99989 * 359.97438 * 20 15 12 36 36 H 1.09000 * 109.47392 * 44.17127 * 21 10 9 37 37 H 1.08997 * 109.47521 * 284.17325 * 21 10 9 38 38 H 1.09004 * 115.54626 * 330.00755 * 22 21 10 39 39 H 1.08999 * 117.49879 * 214.97462 * 23 22 21 40 40 H 1.08996 * 117.50082 * 359.97438 * 23 22 21 41 41 H 1.08999 * 117.50440 * 252.51402 * 24 23 22 42 42 H 1.08997 * 117.49891 * 107.48636 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 7 4.0013 -2.5790 0.0001 11 6 5.4500 -2.6251 -0.2386 12 6 5.7377 -2.2724 -1.6993 13 1 5.3400 -1.2816 -1.9191 14 8 5.1163 -3.2352 -2.5531 15 6 7.2263 -2.2795 -1.9340 16 6 7.8745 -3.4652 -2.2253 17 6 9.2394 -3.4711 -2.4445 18 6 9.9573 -2.2926 -2.3641 19 6 9.3100 -1.1077 -2.0678 20 6 7.9445 -1.1012 -1.8525 21 6 3.6523 -3.2606 1.2536 22 6 3.8141 -4.7715 1.0748 23 6 4.8817 -5.4726 1.9171 24 6 3.3997 -5.6695 2.2422 25 1 -0.4850 0.8401 0.0004 26 1 3.8753 -0.6795 0.8894 27 1 3.8746 -0.6807 -0.8905 28 1 5.9487 -1.9079 0.4133 29 1 5.8214 -3.6278 -0.0270 30 1 5.3560 -4.1505 -2.3537 31 1 7.3140 -4.3865 -2.2850 32 1 9.7451 -4.3970 -2.6757 33 1 11.0241 -2.2976 -2.5327 34 1 9.8711 -0.1871 -2.0046 35 1 7.4388 -0.1755 -1.6209 36 1 2.6185 -3.0343 1.5147 37 1 4.3118 -2.9163 2.0502 38 1 3.6427 -5.1464 0.0658 39 1 5.4125 -6.3089 1.4623 40 1 5.4693 -4.8576 2.5986 41 1 3.0119 -5.1839 3.1377 42 1 2.9555 -6.6352 2.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081514703.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:29 Heat of formation + Delta-G solvation = -14.991137 kcal Electronic energy + Delta-G solvation = -21386.709275 eV Core-core repulsion = 18331.585442 eV Total energy + Delta-G solvation = -3055.123833 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.68907 -39.30252 -37.78501 -36.54169 -34.54724 -32.66279 -31.72528 -30.26358 -29.28555 -26.36770 -24.59599 -23.42392 -23.16375 -22.48521 -21.66278 -21.09639 -19.11348 -18.40891 -17.17276 -16.94619 -16.60938 -16.34613 -16.13217 -15.72290 -15.24073 -15.09767 -14.90143 -14.57040 -14.27923 -14.13907 -13.94021 -13.68079 -13.43603 -13.07340 -12.65584 -12.50912 -12.39307 -12.31367 -12.23928 -11.96447 -11.89026 -11.71345 -11.51021 -11.13388 -10.94368 -10.79354 -10.63648 -9.81365 -9.63752 -9.00083 -8.28579 -6.30782 0.41438 0.50798 1.31370 1.32444 1.42424 2.32318 2.80344 2.94551 3.03740 3.14200 3.61048 3.77197 3.92194 4.05075 4.09403 4.12658 4.14553 4.23359 4.26969 4.32428 4.45919 4.57189 4.65064 4.69691 4.70436 4.80738 4.86000 4.94497 4.99494 5.05573 5.07265 5.15881 5.18055 5.30627 5.41928 5.53852 5.57137 5.62171 5.70475 5.99238 6.11862 6.37833 6.63488 6.75257 6.92606 7.31978 8.88184 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012680 B = 0.006173 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.706284 B = 4534.914167 C = 6196.314661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.009 3.991 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.252 1.252 7 C -0.510 4.510 8 H 0.038 0.962 9 C 0.172 3.828 10 N -0.526 5.526 11 C 0.037 3.963 12 C 0.157 3.843 13 H 0.077 0.923 14 O -0.554 6.554 15 C -0.122 4.122 16 C -0.116 4.116 17 C -0.121 4.121 18 C -0.126 4.126 19 C -0.124 4.124 20 C -0.133 4.133 21 C 0.096 3.904 22 C -0.154 4.154 23 C -0.164 4.164 24 C -0.179 4.179 25 H 0.266 0.734 26 H -0.017 1.017 27 H 0.025 0.975 28 H 0.030 0.970 29 H 0.096 0.904 30 H 0.380 0.620 31 H 0.136 0.864 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.140 0.860 35 H 0.116 0.884 36 H 0.053 0.947 37 H 0.025 0.975 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.626 -8.516 -0.708 23.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.188 4.188 3 Si 0.764 3.236 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.176 1.176 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.045 3.955 10 N -0.249 5.249 11 C -0.091 4.091 12 C 0.097 3.903 13 H 0.095 0.905 14 O -0.360 6.360 15 C -0.123 4.123 16 C -0.134 4.134 17 C -0.138 4.138 18 C -0.144 4.144 19 C -0.142 4.142 20 C -0.151 4.151 21 C -0.032 4.032 22 C -0.172 4.172 23 C -0.201 4.201 24 C -0.217 4.217 25 H 0.075 0.925 26 H 0.001 0.999 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.114 0.886 30 H 0.229 0.771 31 H 0.153 0.847 32 H 0.166 0.834 33 H 0.165 0.835 34 H 0.158 0.842 35 H 0.134 0.866 36 H 0.072 0.928 37 H 0.043 0.957 38 H 0.122 0.878 39 H 0.130 0.870 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 20.977 -8.116 -1.345 22.533 hybrid contribution 0.015 1.098 0.943 1.447 sum 20.993 -7.018 -0.403 22.138 Atomic orbital electron populations 1.70048 1.08011 1.27978 1.52761 1.25796 0.95567 1.02893 0.94535 0.85817 0.79477 0.79102 0.79218 1.19167 1.20490 1.17551 1.21223 0.90983 0.93208 1.49432 0.94324 1.19940 0.94382 0.86744 0.94451 1.61725 1.12127 1.16454 1.34619 1.22763 0.88537 1.02063 0.95722 1.20631 0.87594 0.92948 0.89101 0.90467 1.86646 1.72282 1.19178 1.57943 1.20572 0.95603 0.95025 1.01090 1.21128 0.95407 0.97393 0.99464 1.21468 0.93665 0.99440 0.99277 1.21528 1.01192 0.92372 0.99263 1.21397 0.93816 0.99577 0.99440 1.21193 0.95420 0.97604 1.00895 1.21499 0.99840 0.92444 0.89436 1.22179 1.05780 0.92297 0.96975 1.23096 0.91372 1.03013 1.02631 1.22995 0.98338 1.01223 0.99097 0.92479 0.99914 0.95669 0.95192 0.88616 0.77092 0.84662 0.83416 0.83494 0.84209 0.86566 0.92824 0.95677 0.87811 0.86968 0.89063 0.89473 0.87533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.38 13.96 21.45 0.30 -60.08 16 2 C 0.01 0.55 5.47 84.65 0.46 1.02 16 3 Si 0.94 45.07 27.47 68.60 1.88 46.95 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.25 -11.27 6.54 99.48 0.65 -10.62 16 7 C -0.51 -30.25 8.84 25.60 0.23 -30.03 16 8 H 0.04 2.56 7.50 -2.91 -0.02 2.54 16 9 C 0.17 8.46 3.64 85.56 0.31 8.78 16 10 N -0.53 -21.74 4.31 -900.80 -3.88 -25.62 16 11 C 0.04 1.22 4.40 86.31 0.38 1.60 16 12 C 0.16 5.03 3.23 29.85 0.10 5.13 16 13 H 0.08 2.90 6.45 -2.39 -0.02 2.89 16 14 O -0.55 -18.26 12.96 -148.98 -1.93 -20.19 16 15 C -0.12 -3.20 5.00 -19.87 -0.10 -3.30 16 16 C -0.12 -2.45 9.34 22.27 0.21 -2.24 16 17 C -0.12 -2.09 10.05 22.27 0.22 -1.87 16 18 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 19 C -0.12 -2.47 10.05 22.27 0.22 -2.25 16 20 C -0.13 -3.32 9.68 22.27 0.22 -3.11 16 21 C 0.10 3.69 5.09 86.30 0.44 4.13 16 22 C -0.15 -4.62 4.97 -10.79 -0.05 -4.68 16 23 C -0.16 -3.68 10.04 30.59 0.31 -3.37 16 24 C -0.18 -4.51 10.25 30.59 0.31 -4.20 16 25 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 26 H -0.02 -0.82 7.18 -2.39 -0.02 -0.84 16 27 H 0.03 1.25 5.80 -2.39 -0.01 1.23 16 28 H 0.03 0.99 8.05 -2.39 -0.02 0.97 16 29 H 0.10 2.64 7.05 -2.39 -0.02 2.62 16 30 H 0.38 9.25 7.60 -74.06 -0.56 8.68 16 31 H 0.14 2.33 6.76 -2.91 -0.02 2.31 16 32 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 33 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 35 H 0.12 2.91 8.06 -2.91 -0.02 2.89 16 36 H 0.05 2.49 6.59 -2.39 -0.02 2.48 16 37 H 0.03 0.92 7.79 -2.39 -0.02 0.90 16 38 H 0.10 3.26 8.14 -2.38 -0.02 3.24 16 39 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.09 2.00 8.03 -2.39 -0.02 1.99 16 41 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -71.20 341.44 0.23 -70.97 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.38 Total: 24.27 kcal Atomic # 6 Polarization: -39.79 SS G_CDS: 3.48 Total: -36.31 kcal Atomic # 7 Polarization: -82.12 SS G_CDS: -3.58 Total: -85.70 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -1.93 Total: -20.19 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.95 kcal Total: -71.20 0.23 -70.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514703.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.980 kcal (2) G-P(sol) polarization free energy of solvation -71.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds