Wall clock time and date at job start Mon Mar 30 2020 01:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38260 * 119.94392 * 2 1 4 4 C 1.38180 * 120.03131 * 179.97438 * 3 2 1 5 5 C 1.38772 * 120.20116 * 359.96996 * 4 3 2 6 6 C 1.38968 * 119.87969 * 0.19413 * 5 4 3 7 7 C 1.38069 * 119.94317 * 180.02562 * 2 1 3 8 8 N 1.39854 * 121.86931 * 179.68797 * 6 5 4 9 9 C 1.46896 * 111.00109 * 255.30473 * 8 6 5 10 10 C 1.52998 * 109.47119 * 176.27193 * 9 8 6 11 11 C 1.53001 * 109.47234 * 174.30761 * 10 9 8 12 12 C 1.50695 * 109.47389 * 179.97438 * 11 10 9 13 13 H 1.08007 * 120.00047 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00328 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99534 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00116 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46965 * 60.00266 * 16 14 12 18 18 H 1.48497 * 109.46822 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47361 * 300.00298 * 16 14 12 20 20 C 1.46759 * 112.12536 * 20.08755 * 8 6 5 21 21 C 1.53427 * 108.59800 * 309.74344 * 20 8 6 22 22 H 1.08998 * 109.76515 * 303.63576 * 21 20 8 23 23 C 1.52999 * 109.82073 * 182.87164 * 21 20 8 24 24 O 1.36148 * 118.74732 * 180.46331 * 5 4 3 25 25 H 1.09005 * 109.46650 * 269.97672 * 1 2 3 26 26 H 1.08996 * 109.46834 * 29.97253 * 1 2 3 27 27 H 1.08993 * 109.47354 * 149.97463 * 1 2 3 28 28 H 1.08000 * 119.98385 * 359.92625 * 3 2 1 29 29 H 1.07992 * 119.90100 * 179.97438 * 4 3 2 30 30 H 1.08002 * 119.87345 * 0.02562 * 7 2 1 31 31 H 1.08999 * 109.46680 * 56.27160 * 9 8 6 32 32 H 1.08995 * 109.47223 * 296.26938 * 9 8 6 33 33 H 1.08999 * 109.47152 * 294.30293 * 10 9 8 34 34 H 1.08997 * 109.47391 * 54.29667 * 10 9 8 35 35 H 1.09001 * 109.46203 * 299.99592 * 11 10 9 36 36 H 1.08989 * 109.47548 * 59.99059 * 11 10 9 37 37 H 0.97007 * 119.99782 * 180.02562 * 15 14 12 38 38 H 1.08999 * 109.61686 * 69.47262 * 20 8 6 39 39 H 1.08999 * 109.61906 * 190.00764 * 20 8 6 40 40 H 1.09002 * 109.47247 * 301.51580 * 23 21 20 41 41 H 1.09002 * 109.47543 * 61.51978 * 23 21 20 42 42 H 1.09005 * 109.46896 * 181.51760 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1980 0.0000 4 6 3.5789 1.2001 0.0005 5 6 4.2788 0.0019 0.0017 6 6 3.5875 -1.2037 -0.0017 7 6 2.1962 -1.1964 -0.0005 8 7 4.2505 -2.4351 -0.0072 9 6 4.1919 -3.0586 -1.3359 10 6 5.0044 -4.3550 -1.3272 11 6 4.8284 -5.0763 -2.6650 12 6 5.6291 -6.3529 -2.6566 13 1 6.2063 -6.6226 -1.7845 14 6 5.6250 -7.1766 -3.7623 15 7 4.9225 -6.8479 -4.8244 16 14 6.6182 -8.7587 -3.7521 17 1 6.1432 -9.6342 -2.6507 18 1 6.4462 -9.4594 -5.0500 19 1 8.0541 -8.4404 -3.5473 20 6 5.6375 -2.3181 0.4582 21 6 6.3179 -1.1795 -0.3127 22 1 6.2478 -1.3664 -1.3843 23 6 7.7878 -1.0794 0.1000 24 8 5.6398 0.0385 0.0119 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3634 -0.8897 -0.5142 28 1 1.6559 2.1327 -0.0012 29 1 4.1158 2.1371 0.0001 30 1 1.6532 -2.1300 -0.0014 31 1 4.6066 -2.3749 -2.0767 32 1 3.1550 -3.2815 -1.5873 33 1 6.0585 -4.1222 -1.1760 34 1 4.6549 -4.9975 -0.5191 35 1 3.7743 -5.3092 -2.8160 36 1 5.1779 -4.4339 -3.4730 37 1 4.9193 -7.4277 -5.6022 38 1 5.6479 -2.0950 1.5251 39 1 6.1660 -3.2531 0.2721 40 1 7.8526 -0.9059 1.1741 41 1 8.2994 -2.0091 -0.1494 42 1 8.2587 -0.2520 -0.4308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081571947.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:19 Heat of formation + Delta-G solvation = -23.219149 kcal Electronic energy + Delta-G solvation = -21355.759080 eV Core-core repulsion = 18300.278453 eV Total energy + Delta-G solvation = -3055.480626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.14607 -37.96538 -36.83868 -33.73048 -33.04521 -31.61163 -31.19539 -29.38623 -27.15407 -26.17201 -25.40936 -23.11725 -22.61468 -21.89139 -20.33152 -19.27416 -17.92538 -16.74026 -16.29175 -16.21987 -15.17121 -14.83944 -14.56526 -14.42237 -14.27671 -13.88179 -13.76603 -13.49545 -12.93955 -12.72773 -12.54084 -12.24456 -12.18794 -12.06627 -11.76083 -11.52189 -11.44134 -11.38367 -10.98874 -10.80908 -10.69914 -10.60239 -10.47960 -9.74756 -9.50372 -9.24967 -9.05012 -8.37961 -8.17040 -7.72711 -6.03070 -4.05943 1.35962 1.43668 3.23375 3.31175 3.35892 3.37977 3.67505 3.90119 4.43364 4.52956 4.84890 4.88817 4.94338 4.97134 5.16149 5.28843 5.32634 5.32876 5.41906 5.50666 5.56209 5.58057 5.64991 5.68156 5.79675 5.89067 5.90924 5.99611 6.09373 6.13456 6.21097 6.31274 6.52777 6.56554 6.66242 6.79207 6.97510 7.13135 7.24269 7.58134 7.61750 7.75139 7.95643 8.37731 9.00495 9.58328 11.08228 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020513 B = 0.004216 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.637693 B = 6639.191600 C = 7652.060791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.109 4.109 3 C -0.106 4.106 4 C -0.133 4.133 5 C 0.082 3.918 6 C 0.041 3.959 7 C -0.086 4.086 8 N -0.489 5.489 9 C 0.057 3.943 10 C -0.111 4.111 11 C 0.024 3.976 12 C -0.521 4.521 13 H 0.055 0.945 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.892 3.108 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.015 3.985 21 C 0.047 3.953 22 H 0.077 0.923 23 C -0.140 4.140 24 O -0.312 6.312 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.125 0.875 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.034 0.966 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.018 0.982 36 H 0.014 0.986 37 H 0.261 0.739 38 H 0.085 0.915 39 H 0.112 0.888 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.915 15.466 10.553 18.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.109 4.109 3 C -0.125 4.125 4 C -0.152 4.152 5 C 0.034 3.966 6 C -0.056 4.056 7 C -0.106 4.106 8 N -0.205 5.205 9 C -0.067 4.067 10 C -0.149 4.149 11 C -0.014 4.014 12 C -0.560 4.560 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.113 4.113 21 C -0.011 4.011 22 H 0.095 0.905 23 C -0.198 4.198 24 O -0.226 6.226 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.143 0.857 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.052 0.948 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.036 0.964 36 H 0.033 0.967 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.130 0.870 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.058 15.184 10.721 18.838 hybrid contribution 0.927 -0.625 -0.649 1.293 sum -2.130 14.560 10.072 17.832 Atomic orbital electron populations 1.20708 0.91058 1.02637 1.02042 1.19678 0.96076 0.92672 1.02513 1.20727 0.92869 0.97589 1.01270 1.20374 0.93734 0.95832 1.05252 1.19044 0.82882 0.93741 1.00926 1.18864 0.93823 0.87937 1.04973 1.20731 0.91676 0.98084 1.00068 1.59344 1.14767 1.18814 1.27585 1.22520 1.02357 0.96388 0.85422 1.21824 0.97509 0.93658 1.01921 1.19048 0.97374 0.94662 0.90288 1.21169 1.28851 1.05702 1.00252 0.92713 1.25019 0.95628 0.98147 0.95577 1.69955 1.40952 1.37942 1.04562 0.86653 0.80598 0.83510 0.77219 1.20196 1.21269 1.20251 1.23132 0.88228 1.00060 0.99862 1.23119 0.93451 0.84514 0.99999 0.90497 1.21726 0.92276 1.03343 1.02449 1.86241 1.15419 1.35748 1.85241 0.91485 0.91774 0.91555 0.85721 0.85540 0.85298 0.94775 0.90212 0.93149 0.92084 0.96404 0.96729 0.92906 0.89621 0.86981 0.91592 0.89901 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.01 36.01 0.36 -0.63 16 2 C -0.11 -1.32 5.87 -104.68 -0.61 -1.94 16 3 C -0.11 -1.23 9.70 -39.59 -0.38 -1.61 16 4 C -0.13 -1.74 9.94 -39.41 -0.39 -2.13 16 5 C 0.08 1.25 6.47 -39.11 -0.25 0.99 16 6 C 0.04 0.64 5.11 -83.59 -0.43 0.21 16 7 C -0.09 -1.22 9.19 -39.31 -0.36 -1.58 16 8 N -0.49 -7.92 4.72 -170.82 -0.81 -8.72 16 9 C 0.06 1.02 4.66 -3.83 -0.02 1.00 16 10 C -0.11 -2.23 4.44 -26.73 -0.12 -2.35 16 11 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 12 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 13 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 16 Si 0.89 21.46 29.54 -169.99 -5.02 16.43 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 C 0.01 0.21 5.05 -3.68 -0.02 0.20 16 21 C 0.05 0.65 3.44 -26.51 -0.09 0.56 16 22 H 0.08 1.17 6.88 -51.93 -0.36 0.81 16 23 C -0.14 -1.52 9.60 37.16 0.36 -1.17 16 24 O -0.31 -4.74 10.06 -20.21 -0.20 -4.95 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 27 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 28 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.03 0.62 7.03 -51.93 -0.37 0.26 16 32 H 0.08 1.44 7.95 -51.93 -0.41 1.03 16 33 H 0.05 0.96 6.36 -51.93 -0.33 0.63 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.01 0.39 8.14 -51.94 -0.42 -0.03 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 38 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.11 1.60 5.49 -51.93 -0.29 1.31 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 337.20 15.07 5.08 5.08 Total: -1.00 -30.58 337.20 -9.51 -40.09 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.78 Total: -0.63 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -2.51 Total: -21.30 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: -0.07 Total: -34.72 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.20 Total: -4.95 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.58 -9.51 -40.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081571947.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.866 kcal (2) G-P(sol) polarization free energy of solvation -30.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds