Wall clock time and date at job start Mon Mar 30 2020 01:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38260 * 119.94392 * 2 1 4 4 C 1.38180 * 120.03131 * 179.97438 * 3 2 1 5 5 C 1.38772 * 120.20116 * 359.96996 * 4 3 2 6 6 C 1.38968 * 119.87969 * 0.19413 * 5 4 3 7 7 C 1.38069 * 119.94317 * 180.02562 * 2 1 3 8 8 N 1.39854 * 121.86931 * 179.68797 * 6 5 4 9 9 C 1.46896 * 111.00109 * 255.30473 * 8 6 5 10 10 C 1.52998 * 109.47119 * 176.27193 * 9 8 6 11 11 C 1.53001 * 109.47234 * 174.30761 * 10 9 8 12 12 C 1.50695 * 109.47389 * 179.97438 * 11 10 9 13 13 H 1.08007 * 120.00047 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00328 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99534 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00116 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46965 * 60.00266 * 16 14 12 18 18 H 1.48497 * 109.46822 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47361 * 300.00298 * 16 14 12 20 20 C 1.46759 * 112.12536 * 20.08755 * 8 6 5 21 21 C 1.53427 * 108.59800 * 309.74344 * 20 8 6 22 22 H 1.08998 * 109.76515 * 303.63576 * 21 20 8 23 23 C 1.52999 * 109.82073 * 182.87164 * 21 20 8 24 24 O 1.36148 * 118.74732 * 180.46331 * 5 4 3 25 25 H 1.09005 * 109.46650 * 269.97672 * 1 2 3 26 26 H 1.08996 * 109.46834 * 29.97253 * 1 2 3 27 27 H 1.08993 * 109.47354 * 149.97463 * 1 2 3 28 28 H 1.08000 * 119.98385 * 359.92625 * 3 2 1 29 29 H 1.07992 * 119.90100 * 179.97438 * 4 3 2 30 30 H 1.08002 * 119.87345 * 0.02562 * 7 2 1 31 31 H 1.08999 * 109.46680 * 56.27160 * 9 8 6 32 32 H 1.08995 * 109.47223 * 296.26938 * 9 8 6 33 33 H 1.08999 * 109.47152 * 294.30293 * 10 9 8 34 34 H 1.08997 * 109.47391 * 54.29667 * 10 9 8 35 35 H 1.09001 * 109.46203 * 299.99592 * 11 10 9 36 36 H 1.08989 * 109.47548 * 59.99059 * 11 10 9 37 37 H 0.97007 * 119.99782 * 180.02562 * 15 14 12 38 38 H 1.08999 * 109.61686 * 69.47262 * 20 8 6 39 39 H 1.08999 * 109.61906 * 190.00764 * 20 8 6 40 40 H 1.09002 * 109.47247 * 301.51580 * 23 21 20 41 41 H 1.09002 * 109.47543 * 61.51978 * 23 21 20 42 42 H 1.09005 * 109.46896 * 181.51760 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1980 0.0000 4 6 3.5789 1.2001 0.0005 5 6 4.2788 0.0019 0.0017 6 6 3.5875 -1.2037 -0.0017 7 6 2.1962 -1.1964 -0.0005 8 7 4.2505 -2.4351 -0.0072 9 6 4.1919 -3.0586 -1.3359 10 6 5.0044 -4.3550 -1.3272 11 6 4.8284 -5.0763 -2.6650 12 6 5.6291 -6.3529 -2.6566 13 1 6.2063 -6.6226 -1.7845 14 6 5.6250 -7.1766 -3.7623 15 7 4.9225 -6.8479 -4.8244 16 14 6.6182 -8.7587 -3.7521 17 1 6.1432 -9.6342 -2.6507 18 1 6.4462 -9.4594 -5.0500 19 1 8.0541 -8.4404 -3.5473 20 6 5.6375 -2.3181 0.4582 21 6 6.3179 -1.1795 -0.3127 22 1 6.2478 -1.3664 -1.3843 23 6 7.7878 -1.0794 0.1000 24 8 5.6398 0.0385 0.0119 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3634 -0.8897 -0.5142 28 1 1.6559 2.1327 -0.0012 29 1 4.1158 2.1371 0.0001 30 1 1.6532 -2.1300 -0.0014 31 1 4.6066 -2.3749 -2.0767 32 1 3.1550 -3.2815 -1.5873 33 1 6.0585 -4.1222 -1.1760 34 1 4.6549 -4.9975 -0.5191 35 1 3.7743 -5.3092 -2.8160 36 1 5.1779 -4.4339 -3.4730 37 1 4.9193 -7.4277 -5.6022 38 1 5.6479 -2.0950 1.5251 39 1 6.1660 -3.2531 0.2721 40 1 7.8526 -0.9059 1.1741 41 1 8.2994 -2.0091 -0.1494 42 1 8.2587 -0.2520 -0.4308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081571947.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:18 Heat of formation + Delta-G solvation = -40.192102 kcal Electronic energy + Delta-G solvation = -21356.495082 eV Core-core repulsion = 18300.278453 eV Total energy + Delta-G solvation = -3056.216629 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.27134 -38.98643 -38.13697 -35.66532 -34.02439 -33.45739 -32.16369 -30.58880 -28.74025 -27.12576 -26.81366 -24.71549 -23.78885 -23.00678 -21.94849 -20.48098 -19.03746 -18.51125 -17.72725 -17.40127 -16.61878 -16.38552 -16.09499 -15.65260 -15.36493 -14.97008 -14.79152 -14.49307 -14.35356 -14.13417 -13.75697 -13.65701 -13.47676 -13.00119 -12.98768 -12.92253 -12.68940 -12.61089 -12.47353 -12.43562 -12.18398 -12.04503 -11.64383 -11.51778 -11.41856 -11.20690 -10.55805 -10.31914 -9.26581 -8.86213 -8.20746 -6.32241 0.30307 0.39528 1.40543 1.43423 1.51323 2.17695 2.39914 2.55481 2.79821 3.12808 3.44624 3.80110 3.82558 3.84869 4.03517 4.08006 4.12360 4.24333 4.27127 4.41650 4.49623 4.53754 4.62388 4.66502 4.78698 4.84179 4.86765 4.90198 4.97944 5.05365 5.10787 5.14230 5.19276 5.27040 5.29767 5.47627 5.62271 5.65317 5.75268 5.81607 5.89065 6.06872 6.22245 6.45108 6.83929 7.37301 8.91040 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020513 B = 0.004216 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.637693 B = 6639.191600 C = 7652.060791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.108 4.108 3 C -0.098 4.098 4 C -0.138 4.138 5 C 0.059 3.941 6 C 0.015 3.985 7 C -0.102 4.102 8 N -0.494 5.494 9 C 0.073 3.927 10 C -0.093 4.093 11 C 0.028 3.972 12 C -0.542 4.542 13 H 0.063 0.937 14 C 0.000 4.000 15 N -0.934 5.934 16 Si 0.965 3.035 17 H -0.267 1.267 18 H -0.284 1.284 19 H -0.265 1.265 20 C 0.015 3.985 21 C 0.046 3.954 22 H 0.056 0.944 23 C -0.135 4.135 24 O -0.320 6.320 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.160 0.840 29 H 0.144 0.856 30 H 0.125 0.875 31 H 0.023 0.977 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.060 0.940 35 H -0.009 1.009 36 H -0.011 1.011 37 H 0.264 0.736 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.728 16.259 11.795 20.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.108 4.108 3 C -0.116 4.116 4 C -0.157 4.157 5 C 0.011 3.989 6 C -0.081 4.081 7 C -0.122 4.122 8 N -0.210 5.210 9 C -0.052 4.052 10 C -0.131 4.131 11 C -0.010 4.010 12 C -0.580 4.580 13 H 0.081 0.919 14 C -0.197 4.197 15 N -0.574 5.574 16 Si 0.789 3.211 17 H -0.192 1.192 18 H -0.210 1.210 19 H -0.190 1.190 20 C -0.112 4.112 21 C -0.012 4.012 22 H 0.074 0.926 23 C -0.192 4.192 24 O -0.235 6.235 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.083 0.917 28 H 0.178 0.822 29 H 0.162 0.838 30 H 0.143 0.857 31 H 0.041 0.959 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.010 0.990 36 H 0.008 0.992 37 H 0.072 0.928 38 H 0.112 0.888 39 H 0.130 0.870 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.871 15.994 11.986 20.192 hybrid contribution 0.776 -0.773 -1.037 1.508 sum -2.095 15.221 10.949 18.867 Atomic orbital electron populations 1.20772 0.88768 1.03570 1.03177 1.20074 0.97770 0.92106 1.00898 1.21158 0.92430 0.98794 0.99191 1.20728 0.94585 0.95771 1.04576 1.19366 0.83057 0.94418 1.02028 1.19024 0.94470 0.87788 1.06821 1.20908 0.91400 0.99048 1.00827 1.59301 1.15959 1.19758 1.25991 1.22187 1.01151 0.95195 0.86671 1.21545 0.98701 0.94170 0.98653 1.18932 0.95288 0.94365 0.92376 1.21622 1.29114 1.06604 1.00670 0.91883 1.25981 0.96710 1.01966 0.95087 1.70098 1.42502 1.39479 1.05323 0.85501 0.79275 0.78842 0.77447 1.19163 1.20966 1.18996 1.23175 0.87416 1.00274 1.00340 1.23173 0.95075 0.84137 0.98768 0.92559 1.21735 0.90084 1.04165 1.03214 1.86229 1.15618 1.36200 1.85417 0.90125 0.89805 0.91719 0.82211 0.83816 0.85676 0.95866 0.91085 0.91961 0.92079 0.99013 0.99215 0.92776 0.88772 0.87015 0.90459 0.88904 0.90931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.69 10.01 71.24 0.71 -0.98 16 2 C -0.11 -2.44 5.87 -19.90 -0.12 -2.55 16 3 C -0.10 -2.01 9.70 22.26 0.22 -1.80 16 4 C -0.14 -3.38 9.94 22.38 0.22 -3.16 16 5 C 0.06 1.77 6.47 22.57 0.15 1.91 16 6 C 0.02 0.49 5.11 38.25 0.20 0.68 16 7 C -0.10 -2.89 9.19 22.45 0.21 -2.69 16 8 N -0.49 -16.26 4.72 -694.36 -3.28 -19.53 16 9 C 0.07 2.70 4.66 86.30 0.40 3.10 16 10 C -0.09 -3.82 4.44 30.59 0.14 -3.69 16 11 C 0.03 1.48 4.97 29.85 0.15 1.63 16 12 C -0.54 -30.63 9.11 25.60 0.23 -30.40 16 13 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 14 C 0.00 0.02 5.46 84.66 0.46 0.48 16 15 N -0.93 -56.94 13.29 21.45 0.28 -56.66 16 16 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 20 C 0.02 0.44 5.05 86.47 0.44 0.88 16 21 C 0.05 1.28 3.44 30.74 0.11 1.39 16 22 H 0.06 1.77 6.88 -2.39 -0.02 1.76 16 23 C -0.13 -2.77 9.60 71.98 0.69 -2.08 16 24 O -0.32 -9.63 10.06 -95.24 -0.96 -10.59 16 25 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 26 H 0.08 1.02 8.08 -2.39 -0.02 1.00 16 27 H 0.06 1.06 8.08 -2.39 -0.02 1.04 16 28 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 29 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 30 H 0.13 3.52 8.06 -2.91 -0.02 3.49 16 31 H 0.02 0.89 7.03 -2.39 -0.02 0.88 16 32 H 0.07 2.71 7.95 -2.39 -0.02 2.69 16 33 H 0.06 2.39 6.36 -2.39 -0.02 2.38 16 34 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 35 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 36 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 37 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 38 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.11 3.15 5.49 -2.39 -0.01 3.13 16 40 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 Total: -1.00 -66.57 337.20 3.26 -63.31 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.98 Total: 14.79 kcal Atomic # 6 Polarization: -41.47 SS G_CDS: 4.20 Total: -37.27 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -2.99 Total: -76.19 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -0.96 Total: -10.59 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -66.57 3.26 -63.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081571947.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.120 kcal (2) G-P(sol) polarization free energy of solvation -66.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds