Wall clock time and date at job start Mon Mar 30 2020 01:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38255 * 119.94402 * 2 1 4 4 C 1.38177 * 120.03111 * 179.81318 * 3 2 1 5 5 C 1.38776 * 120.20300 * 0.59696 * 4 3 2 6 6 C 1.38963 * 119.87467 * 359.53709 * 5 4 3 7 7 C 1.38064 * 119.94150 * 180.27478 * 2 1 3 8 8 N 1.39851 * 121.87472 * 180.39115 * 6 5 4 9 9 C 1.46904 * 110.99936 * 104.76670 * 8 6 5 10 10 C 1.52998 * 109.47046 * 66.04958 * 9 8 6 11 11 C 1.53005 * 109.47022 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.46982 * 179.97438 * 11 10 9 13 13 H 1.08007 * 120.00453 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00186 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00623 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99719 * 0.02562 * 14 12 11 17 17 H 1.48492 * 109.47512 * 89.99504 * 16 14 12 18 18 H 1.48500 * 109.47004 * 209.99987 * 16 14 12 19 19 H 1.48508 * 109.46833 * 329.99372 * 16 14 12 20 20 C 1.46749 * 112.13066 * 339.98354 * 8 6 5 21 21 C 1.53428 * 108.60393 * 50.21997 * 20 8 6 22 22 H 1.09000 * 109.77058 * 56.35610 * 21 20 8 23 23 C 1.53000 * 109.77370 * 177.09864 * 21 20 8 24 24 O 1.36152 * 118.74803 * 179.40241 * 5 4 3 25 25 H 1.09002 * 109.47152 * 269.72359 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.72460 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.72441 * 1 2 3 28 28 H 1.08007 * 119.98240 * 0.09097 * 3 2 1 29 29 H 1.07999 * 119.89929 * 180.31633 * 4 3 2 30 30 H 1.08003 * 119.88010 * 359.94833 * 7 2 1 31 31 H 1.08998 * 109.46764 * 186.04188 * 9 8 6 32 32 H 1.08997 * 109.46915 * 306.04732 * 9 8 6 33 33 H 1.09007 * 109.46883 * 299.99467 * 10 9 8 34 34 H 1.08998 * 109.47753 * 59.99655 * 10 9 8 35 35 H 1.08998 * 109.46676 * 299.99161 * 11 10 9 36 36 H 1.08997 * 109.47028 * 59.99720 * 11 10 9 37 37 H 0.96998 * 120.00485 * 180.02562 * 15 14 12 38 38 H 1.08997 * 109.61761 * 169.95792 * 20 8 6 39 39 H 1.09005 * 109.61290 * 290.31279 * 20 8 6 40 40 H 1.09000 * 109.47395 * 60.00376 * 23 21 20 41 41 H 1.08997 * 109.47241 * 180.02562 * 23 21 20 42 42 H 1.09004 * 109.47493 * 300.00169 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1980 0.0000 4 6 3.5789 1.2001 0.0039 5 6 4.2789 0.0018 -0.0047 6 6 3.5876 -1.2036 -0.0075 7 6 2.1961 -1.1964 -0.0057 8 7 4.2504 -2.4351 -0.0079 9 6 4.1898 -3.0661 1.3173 10 6 2.7403 -3.4331 1.6416 11 6 2.6771 -4.0897 3.0221 12 6 1.2493 -4.4506 3.3417 13 1 0.4653 -4.2331 2.6315 14 6 0.9438 -5.0586 4.5409 15 7 -0.3022 -5.3732 4.8202 16 14 2.2997 -5.4343 5.7697 17 1 2.4730 -4.2777 6.6847 18 1 1.9338 -6.6385 6.5578 19 1 3.5704 -5.6855 5.0432 20 6 5.6379 -2.3159 -0.4706 21 6 6.3174 -1.1811 0.3069 22 1 6.2457 -1.3731 1.3774 23 6 7.7879 -1.0806 -0.1035 24 8 5.6399 0.0386 -0.0130 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3633 -0.8875 -0.5181 27 1 -0.3633 0.8925 -0.5096 28 1 1.6559 2.1327 0.0015 29 1 4.1158 2.1372 0.0091 30 1 1.6532 -2.1300 -0.0094 31 1 4.8019 -3.9680 1.3186 32 1 4.5653 -2.3709 2.0682 33 1 2.1282 -2.5312 1.6403 34 1 2.3647 -4.1282 0.8907 35 1 3.2893 -4.9915 3.0238 36 1 3.0525 -3.3942 3.7727 37 1 -0.5172 -5.8006 5.6640 38 1 6.1661 -3.2517 -0.2884 39 1 5.6499 -2.0906 -1.5371 40 1 7.8538 -0.8754 -1.1720 41 1 8.2658 -0.2736 0.4519 42 1 8.2920 -2.0214 0.1176 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081571952.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:22 Heat of formation + Delta-G solvation = -16.738937 kcal Electronic energy + Delta-G solvation = -21695.006293 eV Core-core repulsion = 18639.806670 eV Total energy + Delta-G solvation = -3055.199623 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.18225 -37.89668 -36.85616 -33.81231 -33.03446 -31.75599 -30.98826 -29.66855 -27.62458 -26.08968 -25.05050 -23.16804 -22.53832 -21.96431 -20.34703 -19.21349 -17.98377 -16.84340 -16.46119 -16.21740 -15.27488 -14.91300 -14.55478 -14.20691 -14.07335 -13.91710 -13.69563 -13.31414 -13.10435 -12.78810 -12.61463 -12.56792 -12.23908 -12.06496 -11.86669 -11.66410 -11.48112 -11.38339 -11.19388 -10.78981 -10.63580 -10.57964 -9.95422 -9.72474 -9.67571 -9.24229 -9.07893 -8.53851 -8.07595 -7.71756 -6.04268 -4.01954 1.45790 1.55335 3.18338 3.29628 3.37014 3.39926 3.69577 3.91224 4.40926 4.44697 4.77509 4.80018 4.90057 5.06403 5.08773 5.23423 5.29646 5.37440 5.43372 5.45988 5.51339 5.59374 5.69010 5.70801 5.74950 5.84423 5.85570 6.03205 6.13936 6.18312 6.29333 6.35088 6.47316 6.55284 6.73665 6.85328 6.89927 7.06421 7.18838 7.29956 7.41364 7.59551 7.79101 8.54346 9.00849 9.58362 11.09234 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015834 B = 0.005567 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.976929 B = 5028.639309 C = 6306.817696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.105 4.105 3 C -0.103 4.103 4 C -0.135 4.135 5 C 0.078 3.922 6 C 0.038 3.962 7 C -0.078 4.078 8 N -0.489 5.489 9 C 0.053 3.947 10 C -0.108 4.108 11 C -0.012 4.012 12 C -0.517 4.517 13 H 0.072 0.928 14 C 0.067 3.933 15 N -0.903 5.903 16 Si 0.878 3.122 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.266 1.266 20 C 0.023 3.977 21 C 0.046 3.954 22 H 0.073 0.927 23 C -0.140 4.140 24 O -0.312 6.312 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.141 0.859 31 H 0.078 0.922 32 H 0.034 0.966 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.015 0.985 36 H 0.008 0.992 37 H 0.263 0.737 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.774 11.111 -11.304 19.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.105 4.105 3 C -0.122 4.122 4 C -0.155 4.155 5 C 0.030 3.970 6 C -0.058 4.058 7 C -0.097 4.097 8 N -0.205 5.205 9 C -0.071 4.071 10 C -0.146 4.146 11 C -0.050 4.050 12 C -0.555 4.555 13 H 0.091 0.909 14 C -0.134 4.134 15 N -0.543 5.543 16 Si 0.706 3.294 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.191 1.191 20 C -0.105 4.105 21 C -0.012 4.012 22 H 0.091 0.909 23 C -0.198 4.198 24 O -0.226 6.226 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.143 0.857 29 H 0.143 0.857 30 H 0.158 0.842 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.033 0.967 36 H 0.027 0.973 37 H 0.072 0.928 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.569 10.807 -11.527 19.583 hybrid contribution 1.072 -0.013 1.377 1.745 sum 12.641 10.794 -10.150 19.476 Atomic orbital electron populations 1.20740 0.90835 1.02417 1.02706 1.19745 0.96340 0.92598 1.01863 1.20752 0.92823 0.97688 1.00905 1.20323 0.93729 0.95670 1.05741 1.18979 0.82455 0.93844 1.01676 1.18697 0.93808 0.87462 1.05856 1.21041 0.91745 0.98645 0.98278 1.59294 1.14038 1.19472 1.27698 1.22520 1.01101 0.97726 0.85764 1.21815 0.92382 1.01046 0.99325 1.19542 0.98121 0.95227 0.92071 1.21102 0.92033 1.38961 1.03401 0.90946 1.25017 0.95228 0.95200 0.97984 1.69908 1.17698 1.42496 1.24157 0.86802 0.83055 0.78006 0.81555 1.20372 1.21358 1.19106 1.22999 0.88081 0.99021 1.00421 1.23086 0.93426 0.85050 0.99660 0.90873 1.21720 0.92349 1.03015 1.02702 1.86242 1.15740 1.35012 1.85627 0.90897 0.91429 0.91927 0.85695 0.85664 0.84181 0.90391 0.94748 0.91473 0.91773 0.96692 0.97344 0.92761 0.88568 0.89260 0.91445 0.91523 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.01 36.01 0.36 -0.99 16 2 C -0.10 -1.50 5.87 -104.68 -0.61 -2.12 16 3 C -0.10 -1.35 9.69 -39.60 -0.38 -1.74 16 4 C -0.14 -1.88 9.94 -39.40 -0.39 -2.28 16 5 C 0.08 1.20 6.47 -39.11 -0.25 0.95 16 6 C 0.04 0.62 5.06 -83.59 -0.42 0.20 16 7 C -0.08 -1.26 7.26 -39.31 -0.29 -1.54 16 8 N -0.49 -7.58 4.66 -170.82 -0.80 -8.37 16 9 C 0.05 0.89 4.58 -3.82 -0.02 0.88 16 10 C -0.11 -2.17 4.10 -26.73 -0.11 -2.28 16 11 C -0.01 -0.28 4.04 -27.88 -0.11 -0.39 16 12 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 13 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 14 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 15 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 16 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 20 C 0.02 0.28 5.32 -3.68 -0.02 0.26 16 21 C 0.05 0.56 3.44 -26.51 -0.09 0.46 16 22 H 0.07 0.95 6.94 -51.93 -0.36 0.59 16 23 C -0.14 -1.22 9.60 37.16 0.36 -0.86 16 24 O -0.31 -4.55 10.06 -20.22 -0.20 -4.75 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 27 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 28 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 29 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 30 H 0.14 2.36 6.35 -52.48 -0.33 2.03 16 31 H 0.08 1.20 7.84 -51.93 -0.41 0.79 16 32 H 0.03 0.59 7.12 -51.93 -0.37 0.22 16 33 H 0.07 1.38 5.10 -51.93 -0.26 1.11 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 36 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.10 1.00 7.82 -51.93 -0.41 0.59 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 330.80 15.07 4.99 4.99 Total: -1.00 -31.69 330.80 -9.04 -40.73 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -6.72 Total: 0.10 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: -2.42 Total: -22.69 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.02 Total: -35.54 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.20 Total: -4.75 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.69 -9.04 -40.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081571952.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.990 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds