Wall clock time and date at job start Mon Mar 30 2020 01:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38255 * 119.94402 * 2 1 4 4 C 1.38177 * 120.03111 * 179.81318 * 3 2 1 5 5 C 1.38776 * 120.20300 * 0.59696 * 4 3 2 6 6 C 1.38963 * 119.87467 * 359.53709 * 5 4 3 7 7 C 1.38064 * 119.94150 * 180.27478 * 2 1 3 8 8 N 1.39851 * 121.87472 * 180.39115 * 6 5 4 9 9 C 1.46904 * 110.99936 * 104.76670 * 8 6 5 10 10 C 1.52998 * 109.47046 * 66.04958 * 9 8 6 11 11 C 1.53005 * 109.47022 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.46982 * 179.97438 * 11 10 9 13 13 H 1.08007 * 120.00453 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00186 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00623 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99719 * 0.02562 * 14 12 11 17 17 H 1.48492 * 109.47512 * 89.99504 * 16 14 12 18 18 H 1.48500 * 109.47004 * 209.99987 * 16 14 12 19 19 H 1.48508 * 109.46833 * 329.99372 * 16 14 12 20 20 C 1.46749 * 112.13066 * 339.98354 * 8 6 5 21 21 C 1.53428 * 108.60393 * 50.21997 * 20 8 6 22 22 H 1.09000 * 109.77058 * 56.35610 * 21 20 8 23 23 C 1.53000 * 109.77370 * 177.09864 * 21 20 8 24 24 O 1.36152 * 118.74803 * 179.40241 * 5 4 3 25 25 H 1.09002 * 109.47152 * 269.72359 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.72460 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.72441 * 1 2 3 28 28 H 1.08007 * 119.98240 * 0.09097 * 3 2 1 29 29 H 1.07999 * 119.89929 * 180.31633 * 4 3 2 30 30 H 1.08003 * 119.88010 * 359.94833 * 7 2 1 31 31 H 1.08998 * 109.46764 * 186.04188 * 9 8 6 32 32 H 1.08997 * 109.46915 * 306.04732 * 9 8 6 33 33 H 1.09007 * 109.46883 * 299.99467 * 10 9 8 34 34 H 1.08998 * 109.47753 * 59.99655 * 10 9 8 35 35 H 1.08998 * 109.46676 * 299.99161 * 11 10 9 36 36 H 1.08997 * 109.47028 * 59.99720 * 11 10 9 37 37 H 0.96998 * 120.00485 * 180.02562 * 15 14 12 38 38 H 1.08997 * 109.61761 * 169.95792 * 20 8 6 39 39 H 1.09005 * 109.61290 * 290.31279 * 20 8 6 40 40 H 1.09000 * 109.47395 * 60.00376 * 23 21 20 41 41 H 1.08997 * 109.47241 * 180.02562 * 23 21 20 42 42 H 1.09004 * 109.47493 * 300.00169 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1980 0.0000 4 6 3.5789 1.2001 0.0039 5 6 4.2789 0.0018 -0.0047 6 6 3.5876 -1.2036 -0.0075 7 6 2.1961 -1.1964 -0.0057 8 7 4.2504 -2.4351 -0.0079 9 6 4.1898 -3.0661 1.3173 10 6 2.7403 -3.4331 1.6416 11 6 2.6771 -4.0897 3.0221 12 6 1.2493 -4.4506 3.3417 13 1 0.4653 -4.2331 2.6315 14 6 0.9438 -5.0586 4.5409 15 7 -0.3022 -5.3732 4.8202 16 14 2.2997 -5.4343 5.7697 17 1 2.4730 -4.2777 6.6847 18 1 1.9338 -6.6385 6.5578 19 1 3.5704 -5.6855 5.0432 20 6 5.6379 -2.3159 -0.4706 21 6 6.3174 -1.1811 0.3069 22 1 6.2457 -1.3731 1.3774 23 6 7.7879 -1.0806 -0.1035 24 8 5.6399 0.0386 -0.0130 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3633 -0.8875 -0.5181 27 1 -0.3633 0.8925 -0.5096 28 1 1.6559 2.1327 0.0015 29 1 4.1158 2.1372 0.0091 30 1 1.6532 -2.1300 -0.0094 31 1 4.8019 -3.9680 1.3186 32 1 4.5653 -2.3709 2.0682 33 1 2.1282 -2.5312 1.6403 34 1 2.3647 -4.1282 0.8907 35 1 3.2893 -4.9915 3.0238 36 1 3.0525 -3.3942 3.7727 37 1 -0.5172 -5.8006 5.6640 38 1 6.1661 -3.2517 -0.2884 39 1 5.6499 -2.0906 -1.5371 40 1 7.8538 -0.8754 -1.1720 41 1 8.2658 -0.2736 0.4519 42 1 8.2920 -2.0214 0.1176 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081571952.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:21 Heat of formation + Delta-G solvation = -35.639141 kcal Electronic energy + Delta-G solvation = -21695.825867 eV Core-core repulsion = 18639.806670 eV Total energy + Delta-G solvation = -3056.019198 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.27456 -38.95428 -38.08949 -35.66516 -34.07593 -33.59934 -32.09824 -30.77454 -29.26023 -27.11452 -26.29003 -24.63102 -23.70068 -23.08186 -22.05534 -20.37949 -19.07575 -18.90302 -17.62066 -17.32930 -16.60988 -16.31877 -16.00041 -15.57169 -15.42031 -15.02494 -14.83330 -14.62611 -14.43462 -14.26075 -13.73985 -13.62116 -13.61567 -13.13476 -13.02846 -12.92373 -12.72891 -12.63175 -12.46790 -12.30419 -11.99556 -11.77657 -11.66121 -11.49894 -11.48978 -11.23100 -10.77453 -10.28634 -9.22331 -8.84888 -8.29778 -6.33855 0.33200 0.41291 1.34187 1.35785 1.47684 2.20072 2.35061 2.55621 2.80682 3.05368 3.46745 3.81693 3.85216 3.86487 4.03329 4.06630 4.17498 4.26528 4.30609 4.42648 4.51412 4.55936 4.63064 4.69845 4.75129 4.81247 4.83628 4.85867 4.91887 5.00526 5.09702 5.14548 5.20091 5.24428 5.29048 5.45608 5.53832 5.63079 5.64839 5.76983 5.93243 6.07641 6.28674 6.47701 6.73507 7.30407 8.87131 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015834 B = 0.005567 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.976929 B = 5028.639309 C = 6306.817696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.115 4.115 3 C -0.097 4.097 4 C -0.139 4.139 5 C 0.064 3.936 6 C 0.021 3.979 7 C -0.101 4.101 8 N -0.499 5.499 9 C 0.066 3.934 10 C -0.098 4.098 11 C -0.007 4.007 12 C -0.530 4.530 13 H 0.031 0.969 14 C 0.005 3.995 15 N -0.951 5.951 16 Si 0.949 3.051 17 H -0.269 1.269 18 H -0.282 1.282 19 H -0.244 1.244 20 C 0.023 3.977 21 C 0.042 3.958 22 H 0.064 0.936 23 C -0.133 4.133 24 O -0.320 6.320 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.090 0.910 28 H 0.158 0.842 29 H 0.147 0.853 30 H 0.120 0.880 31 H 0.096 0.904 32 H 0.031 0.969 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.024 0.976 36 H 0.013 0.987 37 H 0.266 0.734 38 H 0.120 0.880 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.486 12.053 -11.288 21.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.115 4.115 3 C -0.115 4.115 4 C -0.158 4.158 5 C 0.017 3.983 6 C -0.075 4.075 7 C -0.121 4.121 8 N -0.215 5.215 9 C -0.059 4.059 10 C -0.136 4.136 11 C -0.045 4.045 12 C -0.568 4.568 13 H 0.049 0.951 14 C -0.192 4.192 15 N -0.592 5.592 16 Si 0.772 3.228 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.167 1.167 20 C -0.105 4.105 21 C -0.016 4.016 22 H 0.082 0.918 23 C -0.191 4.191 24 O -0.235 6.235 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.109 0.891 28 H 0.175 0.825 29 H 0.164 0.836 30 H 0.138 0.862 31 H 0.114 0.886 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.042 0.958 36 H 0.031 0.969 37 H 0.075 0.925 38 H 0.138 0.862 39 H 0.110 0.890 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 14.298 11.758 -11.536 21.813 hybrid contribution 0.128 -0.259 1.293 1.325 sum 14.426 11.499 -10.243 21.102 Atomic orbital electron populations 1.20765 0.89735 1.03564 1.02484 1.20034 0.97351 0.92629 1.01529 1.21110 0.92797 0.98362 0.99270 1.20694 0.94213 0.96086 1.04800 1.19209 0.83100 0.94072 1.01897 1.18820 0.93837 0.88158 1.06726 1.21063 0.92252 0.98699 1.00039 1.59208 1.16099 1.19547 1.26692 1.22279 0.98392 0.98536 0.86685 1.21611 0.95054 0.99958 0.96952 1.19467 0.94993 0.95828 0.94215 1.21439 0.93673 1.38875 1.02817 0.95089 1.26007 0.97944 0.94944 1.00295 1.70066 1.20268 1.43746 1.25109 0.85674 0.80265 0.78090 0.78737 1.19431 1.20800 1.16731 1.23134 0.86460 1.00382 1.00477 1.23306 0.95060 0.84122 0.99116 0.91845 1.21740 0.89891 1.04424 1.03001 1.86239 1.15228 1.36399 1.85613 0.91687 0.92019 0.89125 0.82472 0.83560 0.86202 0.88557 0.95068 0.92615 0.92874 0.95779 0.96904 0.92497 0.86233 0.88952 0.90929 0.91250 0.88031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.66 10.01 71.24 0.71 -1.95 16 2 C -0.11 -3.28 5.87 -19.90 -0.12 -3.40 16 3 C -0.10 -2.38 9.69 22.26 0.22 -2.17 16 4 C -0.14 -3.63 9.94 22.38 0.22 -3.41 16 5 C 0.06 1.94 6.47 22.57 0.15 2.09 16 6 C 0.02 0.68 5.06 38.25 0.19 0.88 16 7 C -0.10 -3.37 7.26 22.45 0.16 -3.21 16 8 N -0.50 -15.15 4.66 -694.35 -3.24 -18.39 16 9 C 0.07 2.15 4.58 86.30 0.39 2.54 16 10 C -0.10 -4.00 4.10 30.60 0.13 -3.88 16 11 C -0.01 -0.34 4.04 29.85 0.12 -0.22 16 12 C -0.53 -31.19 9.66 25.60 0.25 -30.94 16 13 H 0.03 2.01 7.99 -2.91 -0.02 1.98 16 14 C 0.00 0.28 5.47 84.65 0.46 0.74 16 15 N -0.95 -60.41 13.96 21.45 0.30 -60.11 16 16 Si 0.95 44.57 27.47 68.60 1.88 46.46 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.24 -10.50 6.54 99.48 0.65 -9.85 16 20 C 0.02 0.52 5.32 86.48 0.46 0.98 16 21 C 0.04 0.92 3.44 30.74 0.11 1.03 16 22 H 0.06 1.53 6.94 -2.39 -0.02 1.52 16 23 C -0.13 -1.93 9.60 71.98 0.69 -1.24 16 24 O -0.32 -8.84 10.06 -95.28 -0.96 -9.80 16 25 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.06 1.55 8.08 -2.39 -0.02 1.53 16 27 H 0.09 1.67 8.08 -2.38 -0.02 1.65 16 28 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 29 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 30 H 0.12 4.36 6.35 -2.91 -0.02 4.35 16 31 H 0.10 2.75 7.84 -2.39 -0.02 2.73 16 32 H 0.03 1.03 7.12 -2.39 -0.02 1.01 16 33 H 0.06 2.39 5.10 -2.38 -0.01 2.38 16 34 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.02 1.10 7.20 -2.39 -0.02 1.08 16 36 H 0.01 0.59 7.57 -2.39 -0.02 0.58 16 37 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 38 H 0.12 2.12 7.82 -2.39 -0.02 2.10 16 39 H 0.09 2.05 8.14 -2.38 -0.02 2.04 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -70.10 330.80 3.07 -67.04 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.93 Total: 16.95 kcal Atomic # 6 Polarization: -46.30 SS G_CDS: 4.15 Total: -42.15 kcal Atomic # 7 Polarization: -75.55 SS G_CDS: -2.94 Total: -78.49 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.96 Total: -9.80 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.46 kcal Total: -70.10 3.07 -67.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081571952.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.397 kcal (2) G-P(sol) polarization free energy of solvation -70.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds