Wall clock time and date at job start Mon Mar 30 2020 01:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99446 * 2 1 4 4 H 1.48497 * 109.47063 * 273.39423 * 3 2 1 5 5 H 1.48494 * 109.47621 * 33.40066 * 3 2 1 6 6 H 1.48505 * 109.46838 * 153.40146 * 3 2 1 7 7 C 1.37871 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00230 * 351.79904 * 7 2 1 9 9 C 1.50705 * 119.99505 * 172.06294 * 7 2 1 10 10 C 1.53004 * 115.54513 * 92.67000 * 9 7 2 11 11 N 1.46900 * 109.47289 * 55.07461 * 10 9 7 12 12 C 1.46904 * 110.99966 * 200.26984 * 11 10 9 13 13 C 1.53003 * 109.46811 * 75.90622 * 12 11 10 14 14 O 1.42892 * 109.47325 * 63.79226 * 13 12 11 15 15 C 1.46896 * 111.00207 * 76.31529 * 11 10 9 16 16 C 1.50704 * 109.47039 * 195.87504 * 15 11 10 17 17 C 1.38240 * 119.99662 * 263.47877 * 16 15 11 18 18 C 1.38233 * 119.99862 * 179.76553 * 17 16 15 19 19 C 1.38231 * 119.99967 * 0.51206 * 18 17 16 20 20 C 1.38238 * 120.00267 * 359.73806 * 19 18 17 21 21 C 1.38231 * 120.00306 * 83.75637 * 16 15 11 22 22 C 1.52990 * 117.50253 * 306.95885 * 9 7 2 23 23 C 1.52995 * 60.00266 * 252.51036 * 22 9 7 24 24 H 0.96998 * 119.99868 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47164 * 175.06929 * 10 9 7 26 26 H 1.08996 * 109.46985 * 295.06890 * 10 9 7 27 27 H 1.08997 * 109.46854 * 195.90084 * 12 11 10 28 28 H 1.09001 * 109.46888 * 315.90612 * 12 11 10 29 29 H 1.09008 * 109.46643 * 183.78911 * 13 12 11 30 30 H 1.08999 * 109.47087 * 303.78337 * 13 12 11 31 31 H 0.96700 * 114.00296 * 184.98445 * 14 13 12 32 32 H 1.09007 * 109.47092 * 315.87070 * 15 11 10 33 33 H 1.08995 * 109.47298 * 75.87367 * 15 11 10 34 34 H 1.08001 * 119.99955 * 359.97438 * 17 16 15 35 35 H 1.08006 * 119.99792 * 180.22844 * 18 17 16 36 36 H 1.08001 * 119.99996 * 179.72482 * 19 18 17 37 37 H 1.07993 * 120.00456 * 179.97438 * 20 19 18 38 38 H 1.07996 * 119.99989 * 359.97438 * 21 16 15 39 39 H 1.09004 * 117.49883 * 0.02562 * 22 9 7 40 40 H 1.09005 * 117.50156 * 145.02204 * 22 9 7 41 41 H 1.09002 * 117.50047 * 252.50850 * 23 22 9 42 42 H 1.09005 * 117.51743 * 107.47990 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4247 2.0879 -1.3976 5 1 1.4843 2.6309 0.7707 6 1 3.5808 1.4206 0.6269 7 6 2.0046 -1.1940 0.0005 8 1 1.4729 -2.1245 0.1344 9 6 3.5008 -1.2002 -0.1797 10 6 4.3210 -1.1713 1.1116 11 7 3.9126 -2.2865 1.9762 12 6 4.2958 -2.0377 3.3724 13 6 3.3379 -1.0169 3.9900 14 8 2.0181 -1.5633 4.0264 15 6 4.4711 -3.5572 1.4955 16 6 3.7402 -4.7045 2.1442 17 6 4.2673 -5.3126 3.2682 18 6 3.5945 -6.3617 3.8661 19 6 2.4001 -6.8098 3.3338 20 6 1.8756 -6.2051 2.2068 21 6 2.5458 -5.1525 1.6119 22 6 4.0691 -0.4646 -1.3948 23 6 4.0670 -1.9941 -1.3587 24 1 -0.4850 0.8400 0.0004 25 1 5.3800 -1.2667 0.8716 26 1 4.1495 -0.2279 1.6299 27 1 4.2449 -2.9701 3.9347 28 1 5.3132 -1.6480 3.4060 29 1 3.6619 -0.7817 5.0039 30 1 3.3385 -0.1079 3.3884 31 1 1.3439 -0.9429 4.3355 32 1 4.3558 -3.6185 0.4133 33 1 5.5292 -3.6092 1.7517 34 1 5.2030 -4.9657 3.6812 35 1 4.0045 -6.8344 4.7465 36 1 1.8767 -7.6324 3.7984 37 1 0.9426 -6.5553 1.7907 38 1 2.1361 -4.6801 0.7314 39 1 3.3608 0.0243 -2.0637 40 1 5.0276 0.0404 -1.2745 41 1 5.0242 -2.4955 -1.2146 42 1 3.3574 -2.5122 -2.0038 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088256922.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:13 Heat of formation + Delta-G solvation = 16.249616 kcal Electronic energy + Delta-G solvation = -22256.847377 eV Core-core repulsion = 19203.078244 eV Total energy + Delta-G solvation = -3053.769132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.17863 -37.78482 -36.29407 -34.87861 -31.87509 -31.37448 -30.51469 -28.72036 -26.70728 -25.16689 -23.72137 -22.24468 -21.67493 -21.04336 -20.15828 -18.85437 -16.88144 -16.47039 -16.07537 -15.52653 -14.96497 -14.83545 -14.51210 -14.21430 -13.96396 -13.36304 -13.09734 -13.00474 -12.70293 -12.56864 -12.28373 -12.12511 -11.98276 -11.68517 -11.37865 -10.97059 -10.76788 -10.62849 -10.51421 -10.37141 -10.18485 -9.91986 -9.55470 -9.32775 -8.88130 -8.51165 -8.43335 -8.40708 -8.24738 -7.45532 -5.91975 -3.86971 1.72985 1.81831 3.34161 3.43699 3.46002 4.08757 4.54645 4.56623 4.84685 5.06628 5.18020 5.19408 5.32352 5.35976 5.45961 5.54520 5.70129 5.70754 5.75256 5.86690 5.93389 5.98378 6.03711 6.08936 6.14581 6.19585 6.26195 6.34732 6.40673 6.44810 6.49629 6.58008 6.77325 6.79416 6.91269 7.11118 7.13160 7.23232 7.40866 7.73126 7.85386 7.96291 8.32112 8.73568 9.18298 9.72860 11.21191 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018794 B = 0.006538 C = 0.006274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.504203 B = 4281.781238 C = 4462.035237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.074 3.926 3 Si 0.873 3.127 4 H -0.283 1.283 5 H -0.298 1.298 6 H -0.265 1.265 7 C -0.444 4.444 8 H 0.080 0.920 9 C 0.015 3.985 10 C 0.091 3.909 11 N -0.491 5.491 12 C 0.051 3.949 13 C 0.087 3.913 14 O -0.544 6.544 15 C 0.092 3.908 16 C -0.061 4.061 17 C -0.121 4.121 18 C -0.129 4.129 19 C -0.129 4.129 20 C -0.122 4.122 21 C -0.081 4.081 22 C -0.205 4.205 23 C -0.187 4.187 24 H 0.259 0.741 25 H 0.007 0.993 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.034 0.966 29 H 0.032 0.968 30 H 0.043 0.957 31 H 0.369 0.631 32 H 0.093 0.907 33 H 0.026 0.974 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.129 0.871 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.154 -7.139 6.993 13.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.126 4.126 3 Si 0.702 3.298 4 H -0.210 1.210 5 H -0.226 1.226 6 H -0.190 1.190 7 C -0.481 4.481 8 H 0.098 0.902 9 C 0.014 3.986 10 C -0.036 4.036 11 N -0.214 5.214 12 C -0.077 4.077 13 C 0.009 3.991 14 O -0.347 6.347 15 C -0.036 4.036 16 C -0.061 4.061 17 C -0.140 4.140 18 C -0.147 4.147 19 C -0.147 4.147 20 C -0.140 4.140 21 C -0.099 4.099 22 C -0.243 4.243 23 C -0.224 4.224 24 H 0.069 0.931 25 H 0.025 0.975 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.214 0.786 32 H 0.111 0.889 33 H 0.044 0.956 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.147 0.853 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.807 -7.574 6.752 13.436 hybrid contribution 1.047 1.744 0.317 2.059 sum 9.854 -5.830 7.068 13.455 Atomic orbital electron populations 1.69914 1.06144 1.26312 1.51792 1.24882 0.94399 0.98307 0.95017 0.86993 0.80437 0.84448 0.77892 1.20999 1.22570 1.18968 1.20066 0.86405 0.94545 1.47133 0.90192 1.19414 0.96117 0.98281 0.84804 1.21965 0.93584 0.93162 0.94928 1.61619 1.59115 1.00749 0.99906 1.22183 0.94620 0.99704 0.91234 1.22047 0.84397 0.96014 0.96678 1.86637 1.16429 1.41534 1.90127 1.21130 0.93734 0.88058 1.00632 1.19799 0.95597 0.95554 0.95177 1.20965 0.99920 0.96967 0.96144 1.20950 0.96031 0.97806 0.99907 1.21020 0.96408 1.00366 0.96921 1.21145 0.99705 0.96822 0.96318 1.21143 0.93787 0.94795 1.00187 1.22951 1.01046 0.94679 1.05642 1.22874 1.00600 0.92954 1.05994 0.93108 0.97450 0.91319 0.90393 0.94774 0.95024 0.93846 0.78628 0.88926 0.95597 0.87108 0.86933 0.86885 0.86453 0.85321 0.89411 0.91389 0.91479 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 2 C 0.07 2.10 5.46 -17.82 -0.10 2.00 16 3 Si 0.87 21.61 24.89 -169.99 -4.23 17.38 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.30 -7.49 7.11 56.52 0.40 -7.08 16 6 H -0.26 -6.17 5.67 56.52 0.32 -5.85 16 7 C -0.44 -12.10 9.12 -34.44 -0.31 -12.41 16 8 H 0.08 2.45 8.06 -52.48 -0.42 2.03 16 9 C 0.02 0.34 0.77 -155.66 -0.12 0.22 16 10 C 0.09 1.85 4.53 -3.82 -0.02 1.84 16 11 N -0.49 -9.45 3.93 -236.06 -0.93 -10.38 16 12 C 0.05 0.85 5.19 -3.82 -0.02 0.84 16 13 C 0.09 1.48 7.22 37.16 0.27 1.75 16 14 O -0.54 -10.53 13.59 -35.23 -0.48 -11.01 16 15 C 0.09 1.57 4.93 -4.98 -0.02 1.55 16 16 C -0.06 -1.02 4.95 -104.62 -0.52 -1.53 16 17 C -0.12 -1.78 8.22 -39.58 -0.33 -2.11 16 18 C -0.13 -1.75 10.05 -39.59 -0.40 -2.15 16 19 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 20 C -0.12 -1.87 10.05 -39.58 -0.40 -2.27 16 21 C -0.08 -1.41 9.73 -39.58 -0.39 -1.79 16 22 C -0.21 -4.36 7.62 -26.74 -0.20 -4.57 16 23 C -0.19 -3.75 8.48 -26.73 -0.23 -3.97 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.01 0.14 7.94 -51.93 -0.41 -0.27 16 26 H 0.07 1.47 4.89 -51.93 -0.25 1.22 16 27 H 0.08 1.28 5.80 -51.93 -0.30 0.98 16 28 H 0.03 0.51 8.00 -51.93 -0.42 0.09 16 29 H 0.03 0.44 8.14 -51.92 -0.42 0.02 16 30 H 0.04 0.79 6.69 -51.93 -0.35 0.44 16 31 H 0.37 5.78 9.12 45.56 0.42 6.20 16 32 H 0.09 1.66 5.53 -51.92 -0.29 1.37 16 33 H 0.03 0.40 7.95 -51.93 -0.41 -0.02 16 34 H 0.11 1.42 7.89 -52.49 -0.41 1.00 16 35 H 0.11 1.23 8.06 -52.48 -0.42 0.81 16 36 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.13 2.43 8.06 -52.49 -0.42 2.01 16 39 H 0.09 1.99 7.08 -51.93 -0.37 1.62 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.07 1.18 7.60 -51.93 -0.39 0.79 16 42 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 LS Contribution 334.12 15.07 5.04 5.04 Total: -1.00 -31.45 334.12 -8.80 -40.24 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -5.79 Total: 10.15 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: -3.18 Total: -24.79 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: -0.15 Total: -37.01 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -0.48 Total: -11.01 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.23 Total: 17.38 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.45 -8.80 -40.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088256922.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.491 kcal (2) G-P(sol) polarization free energy of solvation -31.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds