Wall clock time and date at job start Mon Mar 30 2020 01:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99446 * 2 1 4 4 H 1.48497 * 109.47063 * 273.39423 * 3 2 1 5 5 H 1.48494 * 109.47621 * 33.40066 * 3 2 1 6 6 H 1.48505 * 109.46838 * 153.40146 * 3 2 1 7 7 C 1.37871 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00230 * 351.79904 * 7 2 1 9 9 C 1.50705 * 119.99505 * 172.06294 * 7 2 1 10 10 C 1.53004 * 115.54513 * 92.67000 * 9 7 2 11 11 N 1.46900 * 109.47289 * 55.07461 * 10 9 7 12 12 C 1.46904 * 110.99966 * 200.26984 * 11 10 9 13 13 C 1.53003 * 109.46811 * 75.90622 * 12 11 10 14 14 O 1.42892 * 109.47325 * 63.79226 * 13 12 11 15 15 C 1.46896 * 111.00207 * 76.31529 * 11 10 9 16 16 C 1.50704 * 109.47039 * 195.87504 * 15 11 10 17 17 C 1.38240 * 119.99662 * 263.47877 * 16 15 11 18 18 C 1.38233 * 119.99862 * 179.76553 * 17 16 15 19 19 C 1.38231 * 119.99967 * 0.51206 * 18 17 16 20 20 C 1.38238 * 120.00267 * 359.73806 * 19 18 17 21 21 C 1.38231 * 120.00306 * 83.75637 * 16 15 11 22 22 C 1.52990 * 117.50253 * 306.95885 * 9 7 2 23 23 C 1.52995 * 60.00266 * 252.51036 * 22 9 7 24 24 H 0.96998 * 119.99868 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47164 * 175.06929 * 10 9 7 26 26 H 1.08996 * 109.46985 * 295.06890 * 10 9 7 27 27 H 1.08997 * 109.46854 * 195.90084 * 12 11 10 28 28 H 1.09001 * 109.46888 * 315.90612 * 12 11 10 29 29 H 1.09008 * 109.46643 * 183.78911 * 13 12 11 30 30 H 1.08999 * 109.47087 * 303.78337 * 13 12 11 31 31 H 0.96700 * 114.00296 * 184.98445 * 14 13 12 32 32 H 1.09007 * 109.47092 * 315.87070 * 15 11 10 33 33 H 1.08995 * 109.47298 * 75.87367 * 15 11 10 34 34 H 1.08001 * 119.99955 * 359.97438 * 17 16 15 35 35 H 1.08006 * 119.99792 * 180.22844 * 18 17 16 36 36 H 1.08001 * 119.99996 * 179.72482 * 19 18 17 37 37 H 1.07993 * 120.00456 * 179.97438 * 20 19 18 38 38 H 1.07996 * 119.99989 * 359.97438 * 21 16 15 39 39 H 1.09004 * 117.49883 * 0.02562 * 22 9 7 40 40 H 1.09005 * 117.50156 * 145.02204 * 22 9 7 41 41 H 1.09002 * 117.50047 * 252.50850 * 23 22 9 42 42 H 1.09005 * 117.51743 * 107.47990 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4247 2.0879 -1.3976 5 1 1.4843 2.6309 0.7707 6 1 3.5808 1.4206 0.6269 7 6 2.0046 -1.1940 0.0005 8 1 1.4729 -2.1245 0.1344 9 6 3.5008 -1.2002 -0.1797 10 6 4.3210 -1.1713 1.1116 11 7 3.9126 -2.2865 1.9762 12 6 4.2958 -2.0377 3.3724 13 6 3.3379 -1.0169 3.9900 14 8 2.0181 -1.5633 4.0264 15 6 4.4711 -3.5572 1.4955 16 6 3.7402 -4.7045 2.1442 17 6 4.2673 -5.3126 3.2682 18 6 3.5945 -6.3617 3.8661 19 6 2.4001 -6.8098 3.3338 20 6 1.8756 -6.2051 2.2068 21 6 2.5458 -5.1525 1.6119 22 6 4.0691 -0.4646 -1.3948 23 6 4.0670 -1.9941 -1.3587 24 1 -0.4850 0.8400 0.0004 25 1 5.3800 -1.2667 0.8716 26 1 4.1495 -0.2279 1.6299 27 1 4.2449 -2.9701 3.9347 28 1 5.3132 -1.6480 3.4060 29 1 3.6619 -0.7817 5.0039 30 1 3.3385 -0.1079 3.3884 31 1 1.3439 -0.9429 4.3355 32 1 4.3558 -3.6185 0.4133 33 1 5.5292 -3.6092 1.7517 34 1 5.2030 -4.9657 3.6812 35 1 4.0045 -6.8344 4.7465 36 1 1.8767 -7.6324 3.7984 37 1 0.9426 -6.5553 1.7907 38 1 2.1361 -4.6801 0.7314 39 1 3.3608 0.0243 -2.0637 40 1 5.0276 0.0404 -1.2745 41 1 5.0242 -2.4955 -1.2146 42 1 3.3574 -2.5122 -2.0038 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088256922.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:13 Heat of formation + Delta-G solvation = -5.615442 kcal Electronic energy + Delta-G solvation = -22257.795517 eV Core-core repulsion = 19203.078244 eV Total energy + Delta-G solvation = -3054.717272 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.45341 -39.23063 -37.81142 -36.34201 -34.03477 -32.60947 -31.67804 -30.08404 -28.31080 -27.06567 -25.11100 -23.49708 -23.23211 -22.35005 -21.47928 -20.69314 -18.39870 -18.00085 -17.59943 -16.99874 -16.52194 -16.18273 -16.04139 -15.60173 -15.38874 -14.91646 -14.66745 -14.42052 -14.23090 -14.12549 -13.62162 -13.49725 -13.28899 -13.24596 -13.05013 -12.58620 -12.33988 -12.11446 -12.02017 -11.83987 -11.64411 -11.56543 -11.44938 -10.73564 -10.71971 -10.50123 -10.15028 -9.68313 -9.51410 -8.81630 -8.11916 -6.10081 0.56209 0.63408 1.37162 1.39124 1.50723 2.46252 2.83400 3.14376 3.23445 3.51050 3.58603 3.98177 4.04166 4.16067 4.26326 4.27928 4.35727 4.39013 4.42899 4.48277 4.50549 4.57775 4.64397 4.71279 4.76524 4.83148 4.86496 4.90795 4.98737 5.02931 5.10740 5.25183 5.28098 5.44941 5.55458 5.66152 5.72728 5.84788 5.89552 6.24178 6.38865 6.46885 6.59855 6.94338 7.03950 7.52827 9.05564 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018794 B = 0.006538 C = 0.006274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.504203 B = 4281.781238 C = 4462.035237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C 0.015 3.985 3 Si 0.934 3.066 4 H -0.279 1.279 5 H -0.305 1.305 6 H -0.235 1.235 7 C -0.431 4.431 8 H 0.024 0.976 9 C -0.009 4.009 10 C 0.100 3.900 11 N -0.521 5.521 12 C 0.050 3.950 13 C 0.082 3.918 14 O -0.575 6.575 15 C 0.095 3.905 16 C -0.076 4.076 17 C -0.122 4.122 18 C -0.125 4.125 19 C -0.128 4.128 20 C -0.135 4.135 21 C -0.113 4.113 22 C -0.201 4.201 23 C -0.169 4.169 24 H 0.257 0.743 25 H 0.036 0.964 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.026 0.974 31 H 0.379 0.621 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.136 0.864 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.124 0.876 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.711 -7.414 8.744 17.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.180 4.180 3 Si 0.761 3.239 4 H -0.205 1.205 5 H -0.233 1.233 6 H -0.158 1.158 7 C -0.469 4.469 8 H 0.043 0.957 9 C -0.010 4.010 10 C -0.028 4.028 11 N -0.244 5.244 12 C -0.078 4.078 13 C 0.004 3.996 14 O -0.380 6.380 15 C -0.032 4.032 16 C -0.076 4.076 17 C -0.140 4.140 18 C -0.142 4.142 19 C -0.146 4.146 20 C -0.153 4.153 21 C -0.132 4.132 22 C -0.238 4.238 23 C -0.206 4.206 24 H 0.066 0.934 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.226 0.774 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.154 0.846 35 H 0.166 0.834 36 H 0.161 0.839 37 H 0.142 0.858 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.396 -7.862 8.503 16.964 hybrid contribution -0.135 1.664 -0.215 1.684 sum 12.261 -6.197 8.288 16.045 Atomic orbital electron populations 1.70091 1.08239 1.27040 1.54599 1.25663 0.94992 1.02133 0.95180 0.85987 0.80276 0.79526 0.78107 1.20488 1.23253 1.15830 1.20105 0.89290 0.92194 1.45322 0.95736 1.19339 0.93617 1.01064 0.87014 1.21741 0.94419 0.93253 0.93353 1.61496 1.60679 1.01138 1.01124 1.22275 0.95832 1.00029 0.89635 1.22256 0.83490 0.95368 0.98498 1.86596 1.18043 1.42914 1.90493 1.21084 0.95040 0.87346 0.99694 1.19862 0.95431 0.95996 0.96330 1.21236 1.00766 0.96879 0.95118 1.21403 0.95412 0.96985 1.00425 1.21385 0.96699 1.00642 0.95897 1.21324 1.00111 0.96625 0.97258 1.21049 0.95383 0.96487 1.00234 1.22988 1.01799 0.95337 1.03710 1.22850 1.01424 0.92703 1.03637 0.93396 0.94604 0.92429 0.89941 0.91928 0.91379 0.95546 0.77439 0.90644 0.92971 0.84620 0.83422 0.83918 0.85827 0.88912 0.91356 0.88112 0.88077 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.29 13.96 21.45 0.30 -60.99 16 2 C 0.02 0.89 5.46 84.65 0.46 1.35 16 3 Si 0.93 45.02 24.89 68.60 1.71 46.73 16 4 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 6 H -0.24 -10.12 5.67 99.48 0.56 -9.55 16 7 C -0.43 -24.55 9.12 25.60 0.23 -24.32 16 8 H 0.02 1.63 8.06 -2.91 -0.02 1.60 16 9 C -0.01 -0.40 0.77 -52.93 -0.04 -0.45 16 10 C 0.10 3.85 4.53 86.30 0.39 4.24 16 11 N -0.52 -19.43 3.93 -900.77 -3.54 -22.97 16 12 C 0.05 1.55 5.19 86.30 0.45 1.99 16 13 C 0.08 2.65 7.22 71.98 0.52 3.17 16 14 O -0.58 -22.38 13.59 -148.98 -2.02 -24.40 16 15 C 0.10 3.14 4.93 85.56 0.42 3.56 16 16 C -0.08 -2.49 4.95 -19.86 -0.10 -2.59 16 17 C -0.12 -3.23 8.22 22.27 0.18 -3.05 16 18 C -0.12 -2.96 10.05 22.27 0.22 -2.74 16 19 C -0.13 -3.28 10.05 22.27 0.22 -3.05 16 20 C -0.14 -4.23 10.05 22.27 0.22 -4.00 16 21 C -0.11 -4.15 9.73 22.27 0.22 -3.93 16 22 C -0.20 -8.09 7.62 30.59 0.23 -7.86 16 23 C -0.17 -6.59 8.48 30.59 0.26 -6.33 16 24 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 25 H 0.04 1.18 7.94 -2.39 -0.02 1.16 16 26 H 0.06 2.32 4.89 -2.39 -0.01 2.31 16 27 H 0.08 2.46 5.80 -2.39 -0.01 2.45 16 28 H 0.06 1.58 8.00 -2.39 -0.02 1.57 16 29 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.03 0.93 6.69 -2.39 -0.02 0.92 16 31 H 0.38 12.19 9.12 -74.06 -0.68 11.51 16 32 H 0.08 2.68 5.53 -2.38 -0.01 2.67 16 33 H 0.05 1.42 7.95 -2.39 -0.02 1.40 16 34 H 0.14 2.89 7.89 -2.91 -0.02 2.86 16 35 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 36 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 37 H 0.12 3.52 8.06 -2.91 -0.02 3.50 16 38 H 0.09 3.94 8.06 -2.91 -0.02 3.92 16 39 H 0.07 3.02 7.08 -2.39 -0.02 3.01 16 40 H 0.10 3.43 8.14 -2.38 -0.02 3.41 16 41 H 0.10 3.27 7.60 -2.39 -0.02 3.25 16 42 H 0.07 2.92 8.14 -2.38 -0.02 2.90 16 Total: -1.00 -72.21 334.12 0.53 -71.68 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: 0.19 Total: 33.97 kcal Atomic # 6 Polarization: -47.90 SS G_CDS: 3.90 Total: -44.01 kcal Atomic # 7 Polarization: -80.72 SS G_CDS: -3.24 Total: -83.96 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -2.02 Total: -24.40 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.71 Total: 46.73 kcal Total: -72.21 0.53 -71.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088256922.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.064 kcal (2) G-P(sol) polarization free energy of solvation -72.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds