Wall clock time and date at job start Mon Mar 30 2020 02:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38296 * 119.94034 * 2 1 4 4 C 1.38124 * 120.05274 * 180.25551 * 3 2 1 5 5 C 1.38747 * 119.94448 * 359.49200 * 4 3 2 6 6 O 1.35901 * 120.05430 * 180.27561 * 5 4 3 7 7 C 1.38713 * 119.89074 * 0.25099 * 5 4 3 8 8 C 1.50702 * 120.02732 * 180.02562 * 7 5 4 9 9 N 1.46895 * 109.47230 * 285.00200 * 8 7 5 10 10 C 1.46908 * 110.99946 * 170.00075 * 9 8 7 11 11 C 1.50698 * 109.47104 * 284.10554 * 10 9 8 12 12 H 1.08006 * 119.99996 * 4.94292 * 11 10 9 13 13 C 1.37878 * 119.99986 * 184.94452 * 11 10 9 14 14 N 1.31515 * 119.99842 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 119.99850 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47151 * 90.00556 * 15 13 11 17 17 H 1.48500 * 109.47350 * 210.00135 * 15 13 11 18 18 H 1.48498 * 109.47687 * 330.00563 * 15 13 11 19 19 C 1.46906 * 111.00359 * 293.95173 * 9 8 7 20 20 C 1.52992 * 109.47154 * 163.83032 * 19 9 8 21 21 C 1.52999 * 117.49876 * 245.46874 * 20 19 9 22 22 C 1.53004 * 117.50005 * 176.81088 * 20 19 9 23 23 C 1.38166 * 119.94242 * 0.02562 * 7 5 4 24 24 H 1.09007 * 109.46704 * 270.25070 * 1 2 3 25 25 H 1.08990 * 109.47619 * 30.25542 * 1 2 3 26 26 H 1.08998 * 109.46910 * 150.26011 * 1 2 3 27 27 H 1.07997 * 119.97126 * 0.02562 * 3 2 1 28 28 H 1.07998 * 120.02500 * 179.76326 * 4 3 2 29 29 H 0.96697 * 113.99833 * 90.00195 * 6 5 4 30 30 H 1.08999 * 109.46857 * 45.00820 * 8 7 5 31 31 H 1.09002 * 109.46749 * 165.00235 * 8 7 5 32 32 H 1.09001 * 109.46531 * 44.10609 * 10 9 8 33 33 H 1.08995 * 109.47272 * 164.10142 * 10 9 8 34 34 H 0.97000 * 119.99937 * 179.97438 * 14 13 11 35 35 H 1.08999 * 109.46954 * 283.83580 * 19 9 8 36 36 H 1.08997 * 109.46494 * 43.83160 * 19 9 8 37 37 H 1.09000 * 115.54988 * 31.13896 * 20 19 9 38 38 H 1.09002 * 117.49947 * 359.97438 * 21 20 19 39 39 H 1.09004 * 117.50274 * 145.02074 * 21 20 19 40 40 H 1.08998 * 117.49671 * 214.98036 * 22 20 19 41 41 H 1.08996 * 117.49211 * 359.97438 * 22 20 19 42 42 H 1.08003 * 119.97207 * 179.97438 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1984 0.0000 4 6 3.5784 1.2011 -0.0053 5 6 4.2734 0.0002 0.0000 6 8 5.6324 0.0003 0.0004 7 6 3.5788 -1.2004 0.0053 8 6 4.3305 -2.5065 0.0117 9 7 4.8859 -2.7584 -1.3247 10 6 5.8184 -3.8934 -1.3020 11 6 7.1227 -3.4596 -0.6842 12 1 7.2204 -2.4669 -0.2702 13 6 8.1912 -4.3302 -0.6474 14 7 9.3293 -3.9518 -0.1077 15 14 8.0219 -6.0474 -1.3627 16 1 8.4077 -6.0266 -2.7966 17 1 8.9103 -6.9809 -0.6247 18 1 6.6133 -6.5000 -1.2357 19 6 3.8157 -2.9760 -2.3073 20 6 4.3841 -2.8331 -3.7205 21 6 3.8762 -1.6677 -4.5717 22 6 3.4375 -3.0986 -4.8929 23 6 2.1971 -1.1978 0.0049 24 1 -0.3633 0.0045 1.0277 25 1 -0.3634 0.8876 -0.5177 26 1 -0.3633 -0.8923 -0.5098 27 1 1.6558 2.1328 0.0004 28 1 4.1170 2.1372 -0.0092 29 1 6.0254 0.0041 0.8839 30 1 5.1412 -2.4556 0.7385 31 1 3.6512 -3.3153 0.2812 32 1 5.3893 -4.7042 -0.7133 33 1 5.9957 -4.2383 -2.3205 34 1 10.0810 -4.5644 -0.0815 35 1 3.4042 -3.9773 -2.1805 36 1 3.0282 -2.2377 -2.1560 37 1 5.4272 -3.1262 -3.8395 38 1 3.1368 -1.0029 -4.1251 39 1 4.5851 -1.1942 -5.2511 40 1 3.8579 -3.5660 -5.7833 41 1 2.4100 -3.3754 -4.6572 42 1 1.6558 -2.1324 0.0086 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093091532.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:19 Heat of formation + Delta-G solvation = 9.311459 kcal Electronic energy + Delta-G solvation = -21679.493760 eV Core-core repulsion = 18625.423766 eV Total energy + Delta-G solvation = -3054.069993 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.77158 -37.68265 -36.47710 -35.55551 -32.58375 -31.63953 -31.15858 -28.02946 -26.96544 -25.92884 -23.73470 -22.08311 -22.05746 -21.19781 -20.22230 -19.29576 -17.85931 -16.83764 -15.76313 -15.48168 -15.18607 -15.03179 -14.67741 -14.15688 -13.78407 -13.75549 -13.30309 -13.14331 -12.90855 -12.51905 -12.44640 -12.36147 -11.92563 -11.68075 -11.46292 -11.28498 -11.23912 -10.93532 -10.76432 -10.53255 -10.35136 -9.96921 -9.92627 -9.72790 -9.51320 -9.23830 -8.62330 -8.49465 -8.08251 -7.25230 -5.98667 -3.93882 1.48687 1.53338 3.31232 3.38844 3.41036 3.80160 4.16634 4.47011 4.65283 4.79477 4.94725 4.95805 5.12853 5.19834 5.31559 5.33282 5.37470 5.46129 5.52694 5.55191 5.77566 5.82076 5.86827 5.90797 5.93938 6.04341 6.12118 6.17197 6.20228 6.24611 6.40162 6.44876 6.51676 6.70058 6.73949 6.81823 6.91506 6.99996 7.08470 7.70083 7.98275 8.09738 8.22506 8.74623 9.15875 9.64345 11.14663 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016504 B = 0.005945 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.155586 B = 4708.723618 C = 5586.449785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.107 4.107 3 C -0.113 4.113 4 C -0.151 4.151 5 C 0.135 3.865 6 O -0.474 6.474 7 C -0.092 4.092 8 C 0.107 3.893 9 N -0.507 5.507 10 C 0.162 3.838 11 C -0.499 4.499 12 H 0.086 0.914 13 C 0.067 3.933 14 N -0.902 5.902 15 Si 0.870 3.130 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.269 1.269 19 C 0.082 3.918 20 C -0.131 4.131 21 C -0.174 4.174 22 C -0.191 4.191 23 C -0.106 4.106 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.386 0.614 30 H 0.095 0.905 31 H 0.025 0.975 32 H -0.014 1.014 33 H 0.026 0.974 34 H 0.262 0.738 35 H 0.024 0.976 36 H 0.066 0.934 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.453 7.016 -0.846 17.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.107 4.107 3 C -0.131 4.131 4 C -0.169 4.169 5 C 0.089 3.911 6 O -0.284 6.284 7 C -0.093 4.093 8 C -0.021 4.021 9 N -0.230 5.230 10 C 0.036 3.964 11 C -0.537 4.537 12 H 0.104 0.896 13 C -0.134 4.134 14 N -0.542 5.542 15 Si 0.697 3.303 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.194 1.194 19 C -0.046 4.046 20 C -0.150 4.150 21 C -0.211 4.211 22 C -0.229 4.229 23 C -0.124 4.124 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.136 0.864 28 H 0.142 0.858 29 H 0.242 0.758 30 H 0.113 0.887 31 H 0.044 0.956 32 H 0.003 0.997 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.042 0.958 36 H 0.084 0.916 37 H 0.130 0.870 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.049 7.341 -1.553 17.716 hybrid contribution -0.245 -1.666 0.252 1.703 sum -16.294 5.675 -1.301 17.303 Atomic orbital electron populations 1.20720 0.91554 1.02384 1.01901 1.19783 0.95745 0.93101 1.02064 1.20773 0.93562 0.97247 1.01509 1.21419 0.94446 0.97862 1.03214 1.18310 0.83817 0.91096 0.97886 1.84980 1.14725 1.96164 1.32504 1.20417 0.93320 0.95901 0.99636 1.20810 0.97155 0.90809 0.93294 1.61881 1.14444 1.43066 1.03648 1.20230 0.92487 0.87358 0.96364 1.21087 0.93538 1.01911 1.37188 0.89590 1.24883 0.95259 0.97875 0.95358 1.69889 1.02522 1.35994 1.45770 0.86953 0.78201 0.85500 0.79625 1.20264 1.21337 1.19437 1.21656 0.93823 0.98280 0.90886 1.22302 0.99465 1.02116 0.91101 1.22892 1.03434 0.90947 1.03801 1.22946 0.99852 0.99901 1.00175 1.20840 0.93162 0.97381 1.01039 0.91587 0.91882 0.91857 0.86378 0.85844 0.75846 0.88724 0.95644 0.99670 0.95605 0.92852 0.95841 0.91601 0.87036 0.89384 0.89306 0.89282 0.89475 0.86422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.01 36.01 0.36 -0.64 16 2 C -0.11 -1.32 5.88 -104.60 -0.62 -1.94 16 3 C -0.11 -1.39 9.70 -39.60 -0.38 -1.77 16 4 C -0.15 -2.11 9.99 -39.44 -0.39 -2.50 16 5 C 0.13 2.21 6.68 -39.22 -0.26 1.95 16 6 O -0.47 -8.51 12.84 -19.43 -0.25 -8.76 16 7 C -0.09 -1.51 4.49 -104.47 -0.47 -1.98 16 8 C 0.11 2.02 4.53 -4.98 -0.02 2.00 16 9 N -0.51 -10.71 4.37 -237.52 -1.04 -11.75 16 10 C 0.16 3.93 3.61 -4.97 -0.02 3.91 16 11 C -0.50 -14.06 9.17 -34.44 -0.32 -14.37 16 12 H 0.09 2.63 7.91 -52.48 -0.41 2.21 16 13 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 14 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 15 Si 0.87 21.64 27.37 -169.99 -4.65 16.99 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 18 H -0.27 -6.49 6.69 56.52 0.38 -6.11 16 19 C 0.08 1.49 5.11 -3.83 -0.02 1.47 16 20 C -0.13 -2.31 5.58 -90.62 -0.51 -2.82 16 21 C -0.17 -2.65 10.18 -26.69 -0.27 -2.92 16 22 C -0.19 -2.71 10.25 -26.69 -0.27 -2.99 16 23 C -0.11 -1.48 8.32 -39.61 -0.33 -1.81 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 26 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 27 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 28 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 29 H 0.39 5.40 9.06 45.56 0.41 5.81 16 30 H 0.09 1.95 7.20 -51.93 -0.37 1.58 16 31 H 0.03 0.45 7.93 -51.93 -0.41 0.04 16 32 H -0.01 -0.35 7.40 -51.93 -0.38 -0.74 16 33 H 0.03 0.64 5.62 -51.93 -0.29 0.35 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.02 0.42 8.05 -51.93 -0.42 0.00 16 36 H 0.07 1.13 5.86 -51.93 -0.30 0.82 16 37 H 0.11 2.23 6.88 -51.93 -0.36 1.87 16 38 H 0.09 1.30 8.04 -51.93 -0.42 0.89 16 39 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.12 1.50 8.00 -52.48 -0.42 1.08 16 LS Contribution 343.51 15.07 5.18 5.18 Total: -1.00 -31.80 343.51 -9.52 -41.33 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -5.92 Total: 6.39 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: -3.62 Total: -22.56 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: -0.26 Total: -38.55 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -0.25 Total: -8.76 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.65 Total: 16.99 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.80 -9.52 -41.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093091532.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.637 kcal (2) G-P(sol) polarization free energy of solvation -31.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds