Wall clock time and date at job start Mon Mar 30 2020 02:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38296 * 119.94034 * 2 1 4 4 C 1.38124 * 120.05274 * 180.25551 * 3 2 1 5 5 C 1.38747 * 119.94448 * 359.49200 * 4 3 2 6 6 O 1.35901 * 120.05430 * 180.27561 * 5 4 3 7 7 C 1.38713 * 119.89074 * 0.25099 * 5 4 3 8 8 C 1.50702 * 120.02732 * 180.02562 * 7 5 4 9 9 N 1.46895 * 109.47230 * 285.00200 * 8 7 5 10 10 C 1.46908 * 110.99946 * 170.00075 * 9 8 7 11 11 C 1.50698 * 109.47104 * 284.10554 * 10 9 8 12 12 H 1.08006 * 119.99996 * 4.94292 * 11 10 9 13 13 C 1.37878 * 119.99986 * 184.94452 * 11 10 9 14 14 N 1.31515 * 119.99842 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 119.99850 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47151 * 90.00556 * 15 13 11 17 17 H 1.48500 * 109.47350 * 210.00135 * 15 13 11 18 18 H 1.48498 * 109.47687 * 330.00563 * 15 13 11 19 19 C 1.46906 * 111.00359 * 293.95173 * 9 8 7 20 20 C 1.52992 * 109.47154 * 163.83032 * 19 9 8 21 21 C 1.52999 * 117.49876 * 245.46874 * 20 19 9 22 22 C 1.53004 * 117.50005 * 176.81088 * 20 19 9 23 23 C 1.38166 * 119.94242 * 0.02562 * 7 5 4 24 24 H 1.09007 * 109.46704 * 270.25070 * 1 2 3 25 25 H 1.08990 * 109.47619 * 30.25542 * 1 2 3 26 26 H 1.08998 * 109.46910 * 150.26011 * 1 2 3 27 27 H 1.07997 * 119.97126 * 0.02562 * 3 2 1 28 28 H 1.07998 * 120.02500 * 179.76326 * 4 3 2 29 29 H 0.96697 * 113.99833 * 90.00195 * 6 5 4 30 30 H 1.08999 * 109.46857 * 45.00820 * 8 7 5 31 31 H 1.09002 * 109.46749 * 165.00235 * 8 7 5 32 32 H 1.09001 * 109.46531 * 44.10609 * 10 9 8 33 33 H 1.08995 * 109.47272 * 164.10142 * 10 9 8 34 34 H 0.97000 * 119.99937 * 179.97438 * 14 13 11 35 35 H 1.08999 * 109.46954 * 283.83580 * 19 9 8 36 36 H 1.08997 * 109.46494 * 43.83160 * 19 9 8 37 37 H 1.09000 * 115.54988 * 31.13896 * 20 19 9 38 38 H 1.09002 * 117.49947 * 359.97438 * 21 20 19 39 39 H 1.09004 * 117.50274 * 145.02074 * 21 20 19 40 40 H 1.08998 * 117.49671 * 214.98036 * 22 20 19 41 41 H 1.08996 * 117.49211 * 359.97438 * 22 20 19 42 42 H 1.08003 * 119.97207 * 179.97438 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1984 0.0000 4 6 3.5784 1.2011 -0.0053 5 6 4.2734 0.0002 0.0000 6 8 5.6324 0.0003 0.0004 7 6 3.5788 -1.2004 0.0053 8 6 4.3305 -2.5065 0.0117 9 7 4.8859 -2.7584 -1.3247 10 6 5.8184 -3.8934 -1.3020 11 6 7.1227 -3.4596 -0.6842 12 1 7.2204 -2.4669 -0.2702 13 6 8.1912 -4.3302 -0.6474 14 7 9.3293 -3.9518 -0.1077 15 14 8.0219 -6.0474 -1.3627 16 1 8.4077 -6.0266 -2.7966 17 1 8.9103 -6.9809 -0.6247 18 1 6.6133 -6.5000 -1.2357 19 6 3.8157 -2.9760 -2.3073 20 6 4.3841 -2.8331 -3.7205 21 6 3.8762 -1.6677 -4.5717 22 6 3.4375 -3.0986 -4.8929 23 6 2.1971 -1.1978 0.0049 24 1 -0.3633 0.0045 1.0277 25 1 -0.3634 0.8876 -0.5177 26 1 -0.3633 -0.8923 -0.5098 27 1 1.6558 2.1328 0.0004 28 1 4.1170 2.1372 -0.0092 29 1 6.0254 0.0041 0.8839 30 1 5.1412 -2.4556 0.7385 31 1 3.6512 -3.3153 0.2812 32 1 5.3893 -4.7042 -0.7133 33 1 5.9957 -4.2383 -2.3205 34 1 10.0810 -4.5644 -0.0815 35 1 3.4042 -3.9773 -2.1805 36 1 3.0282 -2.2377 -2.1560 37 1 5.4272 -3.1262 -3.8395 38 1 3.1368 -1.0029 -4.1251 39 1 4.5851 -1.1942 -5.2511 40 1 3.8579 -3.5660 -5.7833 41 1 2.4100 -3.3754 -4.6572 42 1 1.6558 -2.1324 0.0086 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093091532.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:19 Heat of formation + Delta-G solvation = -11.533708 kcal Electronic energy + Delta-G solvation = -21680.397674 eV Core-core repulsion = 18625.423766 eV Total energy + Delta-G solvation = -3054.973908 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.96377 -39.07830 -37.69011 -37.00753 -34.66160 -32.88039 -32.31082 -29.93580 -28.26726 -26.94935 -25.42109 -23.35341 -23.19844 -22.77138 -21.45197 -20.79094 -19.16111 -18.90162 -17.03908 -16.80172 -16.71214 -16.38150 -16.03385 -15.80242 -15.23971 -14.79883 -14.54885 -14.44661 -14.31956 -14.23542 -13.78430 -13.52127 -13.32673 -13.25655 -12.69562 -12.45512 -12.42432 -12.37293 -12.33395 -12.08952 -11.88225 -11.84514 -11.43100 -11.17168 -11.11298 -10.82531 -10.71555 -9.74589 -9.19397 -8.90135 -8.23720 -6.24281 0.38497 0.43099 1.33523 1.33781 1.44664 2.35698 2.67469 2.92272 3.08970 3.37448 3.52011 3.79366 3.92571 3.96813 4.04972 4.08266 4.23863 4.34343 4.50153 4.52791 4.58070 4.65545 4.70376 4.76897 4.79041 4.83030 4.91560 4.93453 4.98501 5.01930 5.05335 5.19387 5.27555 5.29195 5.37743 5.43639 5.60199 5.69028 5.70889 6.03247 6.07408 6.44542 6.72016 6.83846 7.01169 7.37947 8.92968 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016504 B = 0.005945 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.155586 B = 4708.723618 C = 5586.449785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.100 4.100 3 C -0.106 4.106 4 C -0.154 4.154 5 C 0.105 3.895 6 O -0.503 6.503 7 C -0.110 4.110 8 C 0.113 3.887 9 N -0.524 5.524 10 C 0.174 3.826 11 C -0.502 4.502 12 H 0.044 0.956 13 C 0.008 3.992 14 N -0.948 5.948 15 Si 0.939 3.061 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.254 1.254 19 C 0.089 3.911 20 C -0.167 4.167 21 C -0.170 4.170 22 C -0.161 4.161 23 C -0.108 4.108 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.152 0.848 28 H 0.135 0.865 29 H 0.393 0.607 30 H 0.061 0.939 31 H 0.035 0.965 32 H -0.017 1.017 33 H 0.026 0.974 34 H 0.264 0.736 35 H 0.028 0.972 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.034 6.944 -2.147 21.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.100 4.100 3 C -0.124 4.124 4 C -0.172 4.172 5 C 0.060 3.940 6 O -0.314 6.314 7 C -0.111 4.111 8 C -0.015 4.015 9 N -0.247 5.247 10 C 0.047 3.953 11 C -0.540 4.540 12 H 0.063 0.937 13 C -0.188 4.188 14 N -0.590 5.590 15 Si 0.764 3.236 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.178 1.178 19 C -0.038 4.038 20 C -0.186 4.186 21 C -0.207 4.207 22 C -0.198 4.198 23 C -0.127 4.127 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.089 0.911 27 H 0.170 0.830 28 H 0.153 0.847 29 H 0.250 0.750 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.001 0.999 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.046 0.954 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.121 0.879 41 H 0.126 0.874 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.659 7.282 -2.855 21.157 hybrid contribution 0.819 -1.491 0.709 1.843 sum -18.839 5.791 -2.145 19.826 Atomic orbital electron populations 1.20793 0.88717 1.03681 1.03183 1.20192 0.97702 0.92238 0.99882 1.21184 0.92800 0.98800 0.99579 1.21591 0.95476 0.97276 1.02877 1.18616 0.83143 0.92340 0.99898 1.84936 1.16421 1.96385 1.33676 1.20244 0.94370 0.94375 1.02086 1.20667 0.96376 0.92905 0.91526 1.61760 1.15886 1.41613 1.05491 1.19936 0.91527 0.88312 0.95488 1.21276 0.95666 1.00270 1.36828 0.93741 1.25757 0.94744 1.02501 0.95820 1.70046 1.03562 1.37817 1.47531 0.85832 0.78975 0.79883 0.78949 1.19413 1.20686 1.17824 1.21646 0.93046 0.98829 0.90321 1.22200 0.98773 1.05536 0.92058 1.22948 1.03364 0.91421 1.02935 1.23044 0.99861 0.98485 0.98394 1.20999 0.91973 0.98949 1.00747 0.90186 0.90138 0.91092 0.83039 0.84670 0.75034 0.92087 0.94732 0.99908 0.95637 0.92679 0.95389 0.90299 0.90251 0.88722 0.89060 0.87938 0.87435 0.85105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 10.01 71.24 0.71 -0.78 16 2 C -0.10 -2.15 5.88 -19.85 -0.12 -2.27 16 3 C -0.11 -2.28 9.70 22.26 0.22 -2.06 16 4 C -0.15 -4.14 9.99 22.36 0.22 -3.92 16 5 C 0.11 3.55 6.68 22.51 0.15 3.70 16 6 O -0.50 -19.53 12.84 -92.43 -1.19 -20.71 16 7 C -0.11 -3.65 4.49 -19.77 -0.09 -3.74 16 8 C 0.11 4.44 4.53 85.56 0.39 4.82 16 9 N -0.52 -22.80 4.37 -905.37 -3.96 -26.76 16 10 C 0.17 8.71 3.61 85.55 0.31 9.02 16 11 C -0.50 -29.77 9.17 25.60 0.23 -29.53 16 12 H 0.04 2.94 7.91 -2.91 -0.02 2.91 16 13 C 0.01 0.50 5.47 84.65 0.46 0.97 16 14 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 15 Si 0.94 45.36 27.37 68.60 1.88 47.24 16 16 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 17 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 18 H -0.25 -11.56 6.69 99.48 0.67 -10.89 16 19 C 0.09 3.19 5.11 86.30 0.44 3.63 16 20 C -0.17 -5.75 5.58 -10.80 -0.06 -5.81 16 21 C -0.17 -4.86 10.18 30.62 0.31 -4.55 16 22 C -0.16 -4.09 10.25 30.62 0.31 -3.78 16 23 C -0.11 -2.84 8.32 22.25 0.19 -2.66 16 24 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 25 H 0.08 0.88 8.09 -2.39 -0.02 0.86 16 26 H 0.07 0.92 8.08 -2.39 -0.02 0.90 16 27 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 28 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 29 H 0.39 12.53 9.06 -74.06 -0.67 11.86 16 30 H 0.06 2.74 7.20 -2.39 -0.02 2.73 16 31 H 0.03 1.26 7.93 -2.39 -0.02 1.24 16 32 H -0.02 -0.83 7.40 -2.39 -0.02 -0.85 16 33 H 0.03 1.28 5.62 -2.39 -0.01 1.26 16 34 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 35 H 0.03 0.97 8.05 -2.39 -0.02 0.95 16 36 H 0.08 2.59 5.86 -2.39 -0.01 2.57 16 37 H 0.08 3.24 6.88 -2.39 -0.02 3.22 16 38 H 0.09 2.58 8.04 -2.39 -0.02 2.56 16 39 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 40 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.13 3.03 8.00 -2.91 -0.02 3.00 16 Total: -1.00 -71.79 343.51 1.01 -70.79 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: 0.29 Total: 26.42 kcal Atomic # 6 Polarization: -40.62 SS G_CDS: 3.68 Total: -36.94 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -3.66 Total: -86.78 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -1.19 Total: -20.71 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.24 kcal Total: -71.79 1.01 -70.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093091532.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.252 kcal (2) G-P(sol) polarization free energy of solvation -71.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds