Wall clock time and date at job start Mon Mar 30 2020 02:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38288 * 119.94230 * 2 1 4 4 C 1.38120 * 120.05306 * 180.02562 * 3 2 1 5 5 C 1.38756 * 119.94678 * 359.97438 * 4 3 2 6 6 O 1.35893 * 120.05586 * 179.97438 * 5 4 3 7 7 C 1.38710 * 119.88623 * 0.02562 * 5 4 3 8 8 C 1.50710 * 120.02898 * 179.97438 * 7 5 4 9 9 N 1.46497 * 109.46811 * 278.16470 * 8 7 5 10 10 C 1.36945 * 119.99743 * 270.95069 * 9 8 7 11 11 H 1.08000 * 119.99924 * 142.59374 * 10 9 8 12 12 C 1.38811 * 120.00147 * 322.60176 * 10 9 8 13 13 N 1.31619 * 119.99970 * 160.10285 * 12 10 9 14 14 Si 1.86799 * 119.99645 * 340.10373 * 12 10 9 15 15 H 1.48501 * 109.47485 * 95.22278 * 14 12 10 16 16 H 1.48507 * 109.46842 * 215.21938 * 14 12 10 17 17 H 1.48497 * 109.47343 * 335.21874 * 14 12 10 18 18 C 1.46500 * 120.00545 * 90.95400 * 9 8 7 19 19 C 1.54961 * 110.92572 * 125.56524 * 18 9 8 20 20 C 1.54265 * 104.16110 * 156.29773 * 19 18 9 21 21 C 1.53875 * 106.64059 * 336.44561 * 20 19 18 22 22 C 1.54269 * 106.59661 * 359.97438 * 21 20 19 23 23 C 1.38166 * 119.94608 * 0.24382 * 7 5 4 24 24 H 1.09007 * 109.47385 * 90.00114 * 1 2 3 25 25 H 1.09002 * 109.47142 * 209.99856 * 1 2 3 26 26 H 1.09001 * 109.47663 * 330.00024 * 1 2 3 27 27 H 1.07997 * 119.97340 * 359.97438 * 3 2 1 28 28 H 1.08001 * 120.02762 * 179.97438 * 4 3 2 29 29 H 0.96700 * 114.00356 * 271.66910 * 6 5 4 30 30 H 1.08994 * 109.47211 * 158.15837 * 8 7 5 31 31 H 1.08998 * 109.46353 * 38.15652 * 8 7 5 32 32 H 0.97000 * 119.99494 * 180.02562 * 13 12 10 33 33 H 1.08999 * 110.67165 * 2.26234 * 18 9 8 34 34 H 1.09000 * 110.47423 * 37.64369 * 19 18 9 35 35 H 1.09003 * 110.53297 * 274.98210 * 19 18 9 36 36 H 1.09001 * 110.03309 * 217.13742 * 20 19 18 37 37 H 1.08994 * 110.02948 * 95.75587 * 20 19 18 38 38 H 1.08994 * 110.03268 * 119.25672 * 21 20 19 39 39 H 1.08995 * 110.03583 * 240.64371 * 21 20 19 40 40 H 1.09001 * 110.48477 * 142.28961 * 22 21 20 41 41 H 1.09007 * 110.48293 * 264.79468 * 22 21 20 42 42 H 1.08003 * 119.97439 * 179.74751 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5784 1.2010 -0.0005 5 6 4.2734 0.0000 -0.0005 6 8 5.6323 0.0001 -0.0016 7 6 3.5787 -1.2006 -0.0005 8 6 4.3303 -2.5069 -0.0011 9 7 4.7433 -2.8319 -1.3686 10 6 3.9103 -3.5527 -2.1823 11 1 3.8488 -3.3191 -3.2349 12 6 3.1450 -4.5833 -1.6541 13 7 2.0833 -5.0134 -2.3023 14 14 3.6220 -5.3597 -0.0235 15 1 2.8597 -4.7129 1.0746 16 1 3.3084 -6.8109 -0.0557 17 1 5.0770 -5.1727 0.2071 18 6 6.0473 -2.3861 -1.8656 19 6 6.8698 -3.5809 -2.4107 20 6 7.8600 -2.9363 -3.4025 21 6 7.2314 -1.6051 -3.8502 22 6 5.8801 -1.4867 -3.1155 23 6 2.1970 -1.1979 -0.0056 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6559 2.1328 -0.0004 28 1 4.1171 2.1371 -0.0010 29 1 6.0250 0.0254 -0.8849 30 1 3.6849 -3.2976 0.3813 31 1 5.2121 -2.4188 0.6335 32 1 1.5483 -5.7333 -1.9330 33 1 6.5985 -1.8630 -1.0842 34 1 6.2196 -4.2879 -2.9260 35 1 7.4076 -4.0756 -1.6018 36 1 8.0046 -3.5891 -4.2633 37 1 8.8146 -2.7514 -2.9099 38 1 7.8805 -0.7741 -3.5742 39 1 7.0716 -1.6115 -4.9284 40 1 5.6956 -0.4538 -2.8203 41 1 5.0697 -1.8529 -3.7460 42 1 1.6556 -2.1325 -0.0098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093563370.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:41 Heat of formation + Delta-G solvation = -25.999639 kcal Electronic energy + Delta-G solvation = -22495.158008 eV Core-core repulsion = 19439.556811 eV Total energy + Delta-G solvation = -3055.601198 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.96288 -39.21392 -37.72728 -36.40217 -33.80332 -32.59446 -32.08284 -29.40883 -28.64434 -27.70539 -26.91486 -24.48535 -23.19674 -21.70296 -21.07997 -20.87653 -19.25660 -18.28637 -17.49503 -17.02926 -16.65046 -16.42218 -16.03715 -15.74240 -14.88077 -14.82549 -14.54679 -14.38499 -14.31595 -14.13280 -14.02245 -13.46424 -13.26826 -12.98726 -12.69601 -12.45418 -12.42955 -12.25694 -12.21894 -11.94416 -11.86033 -11.80576 -11.58005 -11.28698 -11.12278 -11.08698 -10.61789 -9.69349 -9.21334 -8.70632 -8.16734 -5.53916 0.37756 0.50157 1.25138 1.36435 1.45980 2.39942 2.67596 3.12076 3.35890 3.47448 3.89854 3.95805 3.98816 4.04906 4.10511 4.23746 4.35406 4.51230 4.57716 4.60634 4.70038 4.75519 4.82078 4.82425 4.87823 4.90779 4.94815 5.00246 5.11378 5.20082 5.22477 5.23425 5.31147 5.45794 5.52799 5.58497 5.65349 5.66809 5.78310 5.98504 6.04403 6.23901 6.83658 7.01494 7.66359 8.08544 9.02783 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013369 B = 0.009244 C = 0.006453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.870014 B = 3028.242561 C = 4338.031939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.104 4.104 3 C -0.111 4.111 4 C -0.144 4.144 5 C 0.096 3.904 6 O -0.500 6.500 7 C -0.118 4.118 8 C 0.171 3.829 9 N -0.596 5.596 10 C -0.226 4.226 11 H 0.045 0.955 12 C -0.014 4.014 13 N -0.947 5.947 14 Si 0.928 3.072 15 H -0.283 1.283 16 H -0.312 1.312 17 H -0.260 1.260 18 C 0.162 3.838 19 C -0.137 4.137 20 C -0.114 4.114 21 C -0.113 4.113 22 C -0.130 4.130 23 C -0.112 4.112 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.092 0.908 27 H 0.156 0.844 28 H 0.151 0.849 29 H 0.392 0.608 30 H 0.034 0.966 31 H 0.066 0.934 32 H 0.259 0.741 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.036 0.964 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.190 13.073 3.259 14.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.104 4.104 3 C -0.129 4.129 4 C -0.162 4.162 5 C 0.051 3.949 6 O -0.313 6.313 7 C -0.122 4.122 8 C 0.047 3.953 9 N -0.316 5.316 10 C -0.356 4.356 11 H 0.063 0.937 12 C -0.209 4.209 13 N -0.592 5.592 14 Si 0.759 3.241 15 H -0.211 1.211 16 H -0.242 1.242 17 H -0.184 1.184 18 C 0.057 3.943 19 C -0.177 4.177 20 C -0.152 4.152 21 C -0.151 4.151 22 C -0.170 4.170 23 C -0.131 4.131 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.111 0.889 27 H 0.173 0.827 28 H 0.169 0.831 29 H 0.250 0.750 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.055 0.945 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.044 12.916 3.855 14.772 hybrid contribution -0.370 -1.369 -0.034 1.418 sum 5.674 11.547 3.821 13.421 Atomic orbital electron populations 1.20780 0.89682 1.03372 1.02622 1.20210 0.97472 0.92686 1.00069 1.21130 0.93524 0.97858 1.00425 1.21596 0.94922 0.97586 1.02133 1.18296 0.83076 0.91641 1.01924 1.84719 1.15850 1.96347 1.34371 1.21051 0.94508 0.96770 0.99822 1.20111 0.96577 0.91398 0.87257 1.44210 1.15365 1.61350 1.10682 1.18415 1.16739 1.08143 0.92327 0.93707 1.25865 0.97074 0.97791 1.00219 1.69955 1.16520 1.30634 1.42120 0.86097 0.79769 0.76348 0.81914 1.21064 1.24166 1.18391 1.21774 0.84228 0.93685 0.94651 1.22696 0.97508 0.98873 0.98580 1.22022 0.98261 0.96540 0.98331 1.22035 0.95567 0.97911 0.99580 1.22668 0.97475 0.98863 0.97976 1.20864 0.93673 0.97782 1.00813 0.91224 0.92395 0.88942 0.82664 0.83147 0.74951 0.94787 0.91560 0.93140 0.89535 0.93850 0.92932 0.92352 0.90173 0.89586 0.92241 0.92016 0.94509 0.88989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.83 10.01 71.24 0.71 -2.11 16 2 C -0.10 -3.39 5.88 -19.85 -0.12 -3.51 16 3 C -0.11 -3.02 9.69 22.25 0.22 -2.81 16 4 C -0.14 -4.06 9.99 22.37 0.22 -3.84 16 5 C 0.10 3.25 6.68 22.51 0.15 3.40 16 6 O -0.50 -15.21 11.63 -92.35 -1.07 -16.29 16 7 C -0.12 -4.80 5.47 -19.77 -0.11 -4.90 16 8 C 0.17 7.56 4.32 85.64 0.37 7.93 16 9 N -0.60 -27.13 2.14 -675.04 -1.45 -28.58 16 10 C -0.23 -12.43 8.34 84.03 0.70 -11.73 16 11 H 0.05 2.77 6.82 -2.91 -0.02 2.75 16 12 C -0.01 -0.78 5.35 84.86 0.45 -0.33 16 13 N -0.95 -58.93 13.97 21.65 0.30 -58.63 16 14 Si 0.93 47.12 24.86 68.60 1.71 48.82 16 15 H -0.28 -14.01 6.70 99.48 0.67 -13.34 16 16 H -0.31 -16.18 7.11 99.48 0.71 -15.48 16 17 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 18 C 0.16 5.95 2.72 46.31 0.13 6.07 16 19 C -0.14 -4.96 6.37 31.69 0.20 -4.76 16 20 C -0.11 -3.08 6.80 31.32 0.21 -2.87 16 21 C -0.11 -2.91 6.80 31.32 0.21 -2.69 16 22 C -0.13 -4.32 6.22 31.67 0.20 -4.12 16 23 C -0.11 -4.58 9.32 22.25 0.21 -4.38 16 24 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 25 H 0.06 1.57 8.09 -2.39 -0.02 1.55 16 26 H 0.09 1.80 8.08 -2.39 -0.02 1.78 16 27 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 28 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 29 H 0.39 9.87 6.12 -74.06 -0.45 9.42 16 30 H 0.03 1.66 2.89 -2.39 -0.01 1.66 16 31 H 0.07 2.72 7.57 -2.39 -0.02 2.70 16 32 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 33 H 0.09 2.81 6.03 -2.39 -0.01 2.79 16 34 H 0.04 1.89 7.13 -2.39 -0.02 1.88 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 1.80 6.89 -2.39 -0.02 1.78 16 41 H 0.04 1.51 6.56 -2.38 -0.02 1.50 16 42 H 0.09 4.25 8.05 -2.91 -0.02 4.22 16 Total: -1.00 -66.81 324.98 3.77 -63.04 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.52 Total: 22.29 kcal Atomic # 6 Polarization: -34.42 SS G_CDS: 3.76 Total: -30.66 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -1.14 Total: -87.20 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -1.07 Total: -16.29 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.71 Total: 48.82 kcal Total: -66.81 3.77 -63.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093563370.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.040 kcal (2) G-P(sol) polarization free energy of solvation -66.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds