Wall clock time and date at job start Mon Mar 30 2020 01:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47182 * 180.02562 * 9 7 2 11 11 C 1.46840 * 111.00229 * 66.04782 * 10 9 7 12 12 C 1.53039 * 109.52528 * 185.83875 * 11 10 9 13 13 C 1.53115 * 109.27819 * 300.81928 * 12 11 10 14 14 C 1.53118 * 109.16177 * 57.65187 * 13 12 11 15 15 H 1.09004 * 109.50235 * 62.28754 * 14 13 12 16 16 C 1.52996 * 109.50606 * 182.36464 * 14 13 12 17 17 O 1.42899 * 109.47417 * 295.00538 * 16 14 13 18 18 C 1.35903 * 117.00026 * 180.02562 * 17 16 14 19 19 C 1.38729 * 120.05646 * 359.72190 * 18 17 16 20 20 C 1.38146 * 119.94183 * 179.74671 * 19 18 17 21 21 C 1.38264 * 120.05385 * 0.50806 * 20 19 18 22 22 C 1.38262 * 120.11372 * 359.76516 * 21 20 19 23 23 C 1.38140 * 120.05553 * 359.97438 * 22 21 20 24 24 C 1.46848 * 110.99930 * 190.25648 * 10 9 7 25 25 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 27 27 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 28 28 H 1.09009 * 109.46380 * 305.85053 * 11 10 9 29 29 H 1.08998 * 109.46389 * 65.81774 * 11 10 9 30 30 H 1.08995 * 109.50260 * 60.76014 * 12 11 10 31 31 H 1.08999 * 109.50496 * 180.83779 * 12 11 10 32 32 H 1.08992 * 109.52405 * 177.56194 * 13 12 11 33 33 H 1.08998 * 109.52284 * 297.74982 * 13 12 11 34 34 H 1.09009 * 109.46894 * 55.00234 * 16 14 13 35 35 H 1.09003 * 109.47668 * 174.99755 * 16 14 13 36 36 H 1.08001 * 120.03113 * 359.97438 * 19 18 17 37 37 H 1.07999 * 119.97139 * 180.27193 * 20 19 18 38 38 H 1.08006 * 119.94179 * 179.74486 * 21 20 19 39 39 H 1.08006 * 119.97481 * 180.02562 * 22 21 20 40 40 H 1.08002 * 120.02719 * 179.97438 * 23 22 21 41 41 H 1.08998 * 109.46004 * 294.17970 * 24 10 9 42 42 H 1.09000 * 109.46139 * 54.14011 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0018 11 6 2.9698 -3.6534 1.2552 12 6 4.0501 -4.7335 1.1633 13 6 3.3881 -6.0900 0.9063 14 6 2.5596 -6.0095 -0.3788 15 1 3.2161 -5.7954 -1.2222 16 6 1.8472 -7.3433 -0.6118 17 8 2.8165 -8.3657 -0.8507 18 6 2.3466 -9.6204 -1.0784 19 6 0.9808 -9.8636 -1.0663 20 6 0.5054 -11.1389 -1.3032 21 6 1.3900 -12.1744 -1.5419 22 6 2.7518 -11.9357 -1.5489 23 6 3.2320 -10.6612 -1.3178 24 6 1.5226 -4.8924 -0.2423 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6241 -2.5566 0.8903 27 1 0.6247 -2.5571 -0.8897 28 1 3.4389 -2.6840 1.4240 29 1 2.2983 -3.8808 2.0831 30 1 4.7300 -4.4993 0.3443 31 1 4.6073 -4.7714 2.0993 32 1 4.1564 -6.8554 0.7971 33 1 2.7377 -6.3424 1.7437 34 1 1.2585 -7.5995 0.2691 35 1 1.1889 -7.2576 -1.4763 36 1 0.2896 -9.0560 -0.8754 37 1 -0.5579 -11.3279 -1.2982 38 1 1.0165 -13.1716 -1.7228 39 1 3.4408 -12.7462 -1.7359 40 1 4.2959 -10.4753 -1.3230 41 1 0.8578 -5.1140 0.5926 42 1 0.9404 -4.8229 -1.1612 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096411351.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:38 Heat of formation + Delta-G solvation = -27.558371 kcal Electronic energy + Delta-G solvation = -20755.469436 eV Core-core repulsion = 17699.800646 eV Total energy + Delta-G solvation = -3055.668789 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.30222 -38.66447 -37.32858 -34.10595 -32.22958 -31.46425 -31.08777 -29.82726 -26.76192 -26.02020 -23.63597 -22.93867 -22.24307 -21.98626 -20.68900 -19.39645 -18.31252 -16.74898 -16.29901 -15.97558 -15.90060 -15.18555 -14.64032 -14.36214 -14.00064 -13.72004 -13.67363 -13.58237 -13.36957 -13.18605 -12.50244 -12.48942 -11.89936 -11.84051 -11.66160 -11.28880 -11.17818 -11.12383 -10.78876 -10.66752 -10.64062 -10.37591 -10.09898 -10.01585 -9.79998 -9.22307 -8.67943 -8.38743 -8.36655 -7.35877 -6.38128 -4.06992 1.12217 1.25616 3.06338 3.44154 3.46603 3.59118 3.64992 4.49881 4.58734 4.65113 4.72578 4.83766 4.91283 4.99996 5.09021 5.16764 5.20810 5.36611 5.37643 5.41644 5.46472 5.58544 5.70882 5.77504 5.79379 5.93419 6.08559 6.11337 6.14130 6.20000 6.25127 6.31064 6.31124 6.42207 6.58602 6.68763 6.69241 6.98383 7.07865 7.31081 7.77931 7.97545 8.30477 8.57247 8.85620 9.63709 11.01018 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040923 B = 0.003022 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.044666 B = 9262.411157 C = 9694.506147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.013 3.987 3 Si 1.072 2.928 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.588 4.588 8 H 0.058 0.942 9 C 0.184 3.816 10 N -0.528 5.528 11 C 0.064 3.936 12 C -0.117 4.117 13 C -0.110 4.110 14 C -0.081 4.081 15 H 0.089 0.911 16 C 0.066 3.934 17 O -0.310 6.310 18 C 0.136 3.864 19 C -0.211 4.211 20 C -0.080 4.080 21 C -0.166 4.166 22 C -0.082 4.082 23 C -0.156 4.156 24 C 0.064 3.936 25 H 0.266 0.734 26 H -0.020 1.020 27 H 0.020 0.980 28 H 0.085 0.915 29 H 0.017 0.983 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.023 0.977 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.039 -22.023 -0.777 22.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.190 4.190 3 Si 0.900 3.100 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.213 1.213 7 C -0.626 4.626 8 H 0.076 0.924 9 C 0.058 3.942 10 N -0.252 5.252 11 C -0.064 4.064 12 C -0.155 4.155 13 C -0.147 4.147 14 C -0.100 4.100 15 H 0.107 0.893 16 C -0.009 4.009 17 O -0.223 6.223 18 C 0.090 3.910 19 C -0.230 4.230 20 C -0.099 4.099 21 C -0.184 4.184 22 C -0.100 4.100 23 C -0.175 4.175 24 C -0.065 4.065 25 H 0.076 0.924 26 H -0.002 1.002 27 H 0.038 0.962 28 H 0.103 0.897 29 H 0.036 0.964 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.041 0.959 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.364 -20.191 -1.148 20.689 hybrid contribution -0.784 -1.847 0.652 2.110 sum 3.579 -22.038 -0.496 22.332 Atomic orbital electron populations 1.70803 1.06902 1.30349 1.47049 1.25863 0.96486 1.02740 0.93907 0.83490 0.74800 0.75087 0.76578 1.20843 1.21459 1.21335 1.21966 0.94833 0.90888 1.54942 0.92411 1.19816 0.90666 0.88929 0.94762 1.61881 1.27510 1.01808 1.34049 1.21972 0.94983 0.99383 0.90090 1.21631 0.98281 0.94294 1.01318 1.21565 0.99032 0.97820 0.96318 1.21192 0.98009 0.90845 0.99945 0.89292 1.22912 0.90915 0.86609 1.00489 1.86083 1.36350 1.14831 1.85036 1.19105 0.92251 0.84988 0.94674 1.21342 0.94451 0.98817 1.08392 1.20963 0.99735 0.92194 0.96966 1.21040 0.93426 0.99231 1.04683 1.20957 0.95606 0.95834 0.97645 1.20474 0.99631 0.91317 1.06078 1.21917 0.94226 0.90245 1.00148 0.92373 1.00248 0.96194 0.89659 0.96432 0.91309 0.92181 0.91721 0.92773 0.92136 0.91869 0.85407 0.85915 0.86096 0.85527 0.85249 0.95925 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.92 13.65 55.43 0.76 -27.17 16 2 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 3 Si 1.07 25.33 29.90 -169.99 -5.08 20.25 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.59 -16.70 8.43 -34.44 -0.29 -16.99 16 8 H 0.06 1.64 7.14 -52.48 -0.37 1.26 16 9 C 0.18 4.77 4.03 -4.98 -0.02 4.75 16 10 N -0.53 -11.45 4.65 -236.11 -1.10 -12.55 16 11 C 0.06 1.26 5.29 -3.84 -0.02 1.24 16 12 C -0.12 -1.85 6.09 -26.65 -0.16 -2.01 16 13 C -0.11 -1.57 5.15 -26.61 -0.14 -1.71 16 14 C -0.08 -1.20 2.59 -90.54 -0.23 -1.44 16 15 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 16 C 0.07 0.84 4.13 37.16 0.15 0.99 16 17 O -0.31 -4.14 9.72 -19.43 -0.19 -4.33 16 18 C 0.14 1.66 6.69 -39.22 -0.26 1.39 16 19 C -0.21 -2.32 9.04 -39.43 -0.36 -2.68 16 20 C -0.08 -0.76 10.04 -39.61 -0.40 -1.16 16 21 C -0.17 -1.45 10.04 -39.56 -0.40 -1.85 16 22 C -0.08 -0.74 10.04 -39.61 -0.40 -1.14 16 23 C -0.16 -1.68 9.99 -39.43 -0.39 -2.07 16 24 C 0.06 1.12 4.74 -3.83 -0.02 1.11 16 25 H 0.27 8.09 7.22 -40.82 -0.29 7.80 16 26 H -0.02 -0.55 7.99 -51.93 -0.41 -0.97 16 27 H 0.02 0.55 7.85 -51.93 -0.41 0.14 16 28 H 0.09 1.84 6.72 -51.92 -0.35 1.49 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.87 7.89 -51.93 -0.41 0.46 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.71 7.65 -51.92 -0.40 0.32 16 35 H 0.06 0.75 7.67 -51.93 -0.40 0.35 16 36 H 0.13 1.29 6.30 -52.49 -0.33 0.96 16 37 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 39 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 40 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 1.20 8.01 -51.93 -0.42 0.79 16 LS Contribution 336.53 15.07 5.07 5.07 Total: -1.00 -31.12 336.53 -10.39 -41.51 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -6.82 Total: -1.51 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: -3.03 Total: -21.27 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: -0.34 Total: -39.72 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: -0.19 Total: -4.33 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.08 Total: 20.25 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.12 -10.39 -41.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096411351.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.948 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds