Wall clock time and date at job start Mon Mar 30 2020 01:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47182 * 180.02562 * 9 7 2 11 11 C 1.46840 * 111.00229 * 66.04782 * 10 9 7 12 12 C 1.53039 * 109.52528 * 185.83875 * 11 10 9 13 13 C 1.53115 * 109.27819 * 300.81928 * 12 11 10 14 14 C 1.53118 * 109.16177 * 57.65187 * 13 12 11 15 15 H 1.09004 * 109.50235 * 62.28754 * 14 13 12 16 16 C 1.52996 * 109.50606 * 182.36464 * 14 13 12 17 17 O 1.42899 * 109.47417 * 295.00538 * 16 14 13 18 18 C 1.35903 * 117.00026 * 180.02562 * 17 16 14 19 19 C 1.38729 * 120.05646 * 359.72190 * 18 17 16 20 20 C 1.38146 * 119.94183 * 179.74671 * 19 18 17 21 21 C 1.38264 * 120.05385 * 0.50806 * 20 19 18 22 22 C 1.38262 * 120.11372 * 359.76516 * 21 20 19 23 23 C 1.38140 * 120.05553 * 359.97438 * 22 21 20 24 24 C 1.46848 * 110.99930 * 190.25648 * 10 9 7 25 25 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 27 27 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 28 28 H 1.09009 * 109.46380 * 305.85053 * 11 10 9 29 29 H 1.08998 * 109.46389 * 65.81774 * 11 10 9 30 30 H 1.08995 * 109.50260 * 60.76014 * 12 11 10 31 31 H 1.08999 * 109.50496 * 180.83779 * 12 11 10 32 32 H 1.08992 * 109.52405 * 177.56194 * 13 12 11 33 33 H 1.08998 * 109.52284 * 297.74982 * 13 12 11 34 34 H 1.09009 * 109.46894 * 55.00234 * 16 14 13 35 35 H 1.09003 * 109.47668 * 174.99755 * 16 14 13 36 36 H 1.08001 * 120.03113 * 359.97438 * 19 18 17 37 37 H 1.07999 * 119.97139 * 180.27193 * 20 19 18 38 38 H 1.08006 * 119.94179 * 179.74486 * 21 20 19 39 39 H 1.08006 * 119.97481 * 180.02562 * 22 21 20 40 40 H 1.08002 * 120.02719 * 179.97438 * 23 22 21 41 41 H 1.08998 * 109.46004 * 294.17970 * 24 10 9 42 42 H 1.09000 * 109.46139 * 54.14011 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0018 11 6 2.9698 -3.6534 1.2552 12 6 4.0501 -4.7335 1.1633 13 6 3.3881 -6.0900 0.9063 14 6 2.5596 -6.0095 -0.3788 15 1 3.2161 -5.7954 -1.2222 16 6 1.8472 -7.3433 -0.6118 17 8 2.8165 -8.3657 -0.8507 18 6 2.3466 -9.6204 -1.0784 19 6 0.9808 -9.8636 -1.0663 20 6 0.5054 -11.1389 -1.3032 21 6 1.3900 -12.1744 -1.5419 22 6 2.7518 -11.9357 -1.5489 23 6 3.2320 -10.6612 -1.3178 24 6 1.5226 -4.8924 -0.2423 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6241 -2.5566 0.8903 27 1 0.6247 -2.5571 -0.8897 28 1 3.4389 -2.6840 1.4240 29 1 2.2983 -3.8808 2.0831 30 1 4.7300 -4.4993 0.3443 31 1 4.6073 -4.7714 2.0993 32 1 4.1564 -6.8554 0.7971 33 1 2.7377 -6.3424 1.7437 34 1 1.2585 -7.5995 0.2691 35 1 1.1889 -7.2576 -1.4763 36 1 0.2896 -9.0560 -0.8754 37 1 -0.5579 -11.3279 -1.2982 38 1 1.0165 -13.1716 -1.7228 39 1 3.4408 -12.7462 -1.7359 40 1 4.2959 -10.4753 -1.3230 41 1 0.8578 -5.1140 0.5926 42 1 0.9404 -4.8229 -1.1612 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096411351.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:37 Heat of formation + Delta-G solvation = -45.486283 kcal Electronic energy + Delta-G solvation = -20756.246848 eV Core-core repulsion = 17699.800646 eV Total energy + Delta-G solvation = -3056.446202 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.20201 -40.00678 -38.29000 -35.92404 -34.01245 -32.78080 -31.88901 -30.66464 -28.66064 -27.25096 -25.47883 -23.91034 -23.50263 -23.14633 -22.04050 -20.72957 -19.19876 -18.86750 -17.24632 -17.02727 -16.84884 -16.51276 -15.97493 -15.64057 -15.48097 -15.23868 -15.09223 -14.68697 -14.53555 -14.32497 -13.80009 -13.66488 -13.45488 -13.37139 -12.94552 -12.83204 -12.47125 -12.45411 -12.25230 -11.98147 -11.92911 -11.81561 -11.59370 -11.44110 -11.20220 -10.76397 -10.59091 -9.95360 -9.17974 -9.15451 -8.70170 -6.40873 0.39205 0.49589 1.52874 1.61402 1.80985 2.10053 2.55221 2.85133 3.10554 3.18039 3.63465 3.71753 3.88138 3.92049 3.99021 4.14786 4.23093 4.27282 4.29973 4.34036 4.36269 4.50568 4.55207 4.56803 4.64995 4.71736 4.75326 4.83329 4.90294 5.02949 5.06371 5.08999 5.11159 5.26154 5.36731 5.40932 5.48810 5.60290 5.76072 5.87256 5.96869 6.35669 6.38825 6.44766 6.61776 7.39523 8.68750 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040923 B = 0.003022 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.044666 B = 9262.411157 C = 9694.506147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.038 4.038 3 Si 1.121 2.879 4 H -0.283 1.283 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.599 4.599 8 H 0.055 0.945 9 C 0.195 3.805 10 N -0.539 5.539 11 C 0.064 3.936 12 C -0.108 4.108 13 C -0.104 4.104 14 C -0.072 4.072 15 H 0.078 0.922 16 C 0.075 3.925 17 O -0.323 6.323 18 C 0.108 3.892 19 C -0.225 4.225 20 C -0.088 4.088 21 C -0.165 4.165 22 C -0.083 4.083 23 C -0.170 4.170 24 C 0.063 3.937 25 H 0.253 0.747 26 H -0.043 1.043 27 H 0.000 1.000 28 H 0.060 0.940 29 H 0.014 0.986 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.130 0.870 37 H 0.143 0.857 38 H 0.148 0.852 39 H 0.154 0.846 40 H 0.134 0.866 41 H 0.026 0.974 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.163 -23.937 -0.733 24.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.235 4.235 3 Si 0.942 3.058 4 H -0.209 1.209 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.637 4.637 8 H 0.073 0.927 9 C 0.068 3.932 10 N -0.263 5.263 11 C -0.064 4.064 12 C -0.145 4.145 13 C -0.141 4.141 14 C -0.090 4.090 15 H 0.097 0.903 16 C -0.001 4.001 17 O -0.237 6.237 18 C 0.063 3.937 19 C -0.244 4.244 20 C -0.106 4.106 21 C -0.183 4.183 22 C -0.100 4.100 23 C -0.188 4.188 24 C -0.065 4.065 25 H 0.062 0.938 26 H -0.026 1.026 27 H 0.018 0.982 28 H 0.079 0.921 29 H 0.032 0.968 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.148 0.852 37 H 0.161 0.839 38 H 0.166 0.834 39 H 0.172 0.828 40 H 0.152 0.848 41 H 0.044 0.956 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.498 -22.153 -1.103 22.852 hybrid contribution -1.160 -1.389 0.619 1.913 sum 4.338 -23.542 -0.483 23.943 Atomic orbital electron populations 1.70933 1.07932 1.29615 1.49063 1.27439 0.96527 1.06729 0.92777 0.82884 0.74043 0.70851 0.78044 1.20851 1.19328 1.19513 1.22280 0.94883 0.92142 1.54403 0.92674 1.19521 0.90745 0.90290 0.92637 1.61815 1.26837 1.02377 1.35297 1.21999 0.95628 0.99783 0.89032 1.21574 0.96910 0.93488 1.02566 1.21538 0.99344 0.97206 0.96057 1.21021 0.97033 0.90958 1.00036 0.90327 1.22715 0.90559 0.85582 1.01209 1.86020 1.36574 1.15452 1.85695 1.19381 0.93174 0.84709 0.96475 1.21503 0.94147 0.99800 1.08906 1.21297 1.01131 0.91769 0.96388 1.21439 0.93321 1.00289 1.03218 1.21327 0.96412 0.95806 0.96503 1.20725 0.99911 0.91832 1.06380 1.21967 0.95091 0.89396 1.00042 0.93778 1.02595 0.98180 0.92119 0.96819 0.91697 0.89649 0.90098 0.92093 0.91188 0.91377 0.85186 0.83886 0.83440 0.82822 0.84788 0.95614 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.63 13.65 21.45 0.29 -58.34 16 2 C -0.04 -2.20 5.46 84.65 0.46 -1.73 16 3 Si 1.12 50.80 29.90 68.60 2.05 52.85 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.60 -34.81 8.43 25.60 0.22 -34.60 16 8 H 0.05 3.17 7.14 -2.91 -0.02 3.15 16 9 C 0.19 10.52 4.03 85.56 0.35 10.87 16 10 N -0.54 -23.89 4.65 -900.93 -4.19 -28.08 16 11 C 0.06 2.52 5.29 86.33 0.46 2.98 16 12 C -0.11 -3.24 6.09 30.65 0.19 -3.06 16 13 C -0.10 -2.80 5.15 30.67 0.16 -2.64 16 14 C -0.07 -2.07 2.59 -10.74 -0.03 -2.10 16 15 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 16 C 0.07 1.83 4.13 71.98 0.30 2.12 16 17 O -0.32 -8.34 9.72 -92.45 -0.90 -9.24 16 18 C 0.11 2.52 6.69 22.51 0.15 2.67 16 19 C -0.22 -4.67 9.04 22.37 0.20 -4.47 16 20 C -0.09 -1.48 10.04 22.25 0.22 -1.25 16 21 C -0.16 -2.41 10.04 22.28 0.22 -2.19 16 22 C -0.08 -1.27 10.04 22.25 0.22 -1.05 16 23 C -0.17 -3.40 9.99 22.36 0.22 -3.18 16 24 C 0.06 2.27 4.74 86.33 0.41 2.68 16 25 H 0.25 16.02 7.22 -92.71 -0.67 15.36 16 26 H -0.04 -2.51 7.99 -2.39 -0.02 -2.53 16 27 H 0.00 0.01 7.85 -2.38 -0.02 -0.01 16 28 H 0.06 2.67 6.72 -2.38 -0.02 2.66 16 29 H 0.01 0.54 8.14 -2.39 -0.02 0.53 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.08 1.98 7.89 -2.39 -0.02 1.96 16 33 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 1.57 7.65 -2.38 -0.02 1.55 16 35 H 0.07 1.57 7.67 -2.39 -0.02 1.56 16 36 H 0.13 2.51 6.30 -2.91 -0.02 2.49 16 37 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 38 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 39 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 40 H 0.13 2.43 8.06 -2.91 -0.02 2.40 16 41 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.07 2.36 8.01 -2.39 -0.02 2.34 16 Total: -1.00 -68.22 336.53 2.08 -66.14 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 1.07 Total: 11.60 kcal Atomic # 6 Polarization: -38.69 SS G_CDS: 3.75 Total: -34.94 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -3.89 Total: -86.41 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.90 Total: -9.24 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 2.05 Total: 52.85 kcal Total: -68.22 2.08 -66.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096411351.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.651 kcal (2) G-P(sol) polarization free energy of solvation -68.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds