Wall clock time and date at job start Mon Mar 30 2020 01:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99805 * 2 1 4 4 H 1.48505 * 109.46911 * 269.99949 * 3 2 1 5 5 H 1.48494 * 109.47299 * 29.99869 * 3 2 1 6 6 H 1.48502 * 109.46880 * 150.00056 * 3 2 1 7 7 C 1.37872 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99937 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00285 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47357 * 185.00495 * 9 7 2 11 11 C 1.46848 * 110.99894 * 59.32401 * 10 9 7 12 12 C 1.53031 * 109.52518 * 174.15936 * 11 10 9 13 13 C 1.53112 * 109.27862 * 59.17651 * 12 11 10 14 14 C 1.53121 * 109.16626 * 302.34864 * 13 12 11 15 15 H 1.09004 * 109.53190 * 297.69364 * 14 13 12 16 16 C 1.52993 * 109.50639 * 177.59314 * 14 13 12 17 17 O 1.42903 * 109.47389 * 65.19629 * 16 14 13 18 18 C 1.35898 * 117.00497 * 179.97438 * 17 16 14 19 19 C 1.38726 * 120.05957 * 179.97438 * 18 17 16 20 20 C 1.38140 * 119.94895 * 180.02562 * 19 18 17 21 21 C 1.38266 * 120.05207 * 0.02562 * 20 19 18 22 22 C 1.38264 * 120.11226 * 0.25485 * 21 20 19 23 23 C 1.38145 * 120.05580 * 359.44882 * 22 21 20 24 24 C 1.46844 * 111.00117 * 295.11502 * 10 9 7 25 25 H 0.97002 * 120.00219 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46729 * 65.00808 * 9 7 2 27 27 H 1.08991 * 109.47352 * 305.00911 * 9 7 2 28 28 H 1.09002 * 109.46498 * 294.17946 * 11 10 9 29 29 H 1.09008 * 109.45905 * 54.15330 * 11 10 9 30 30 H 1.08998 * 109.50561 * 179.11981 * 12 11 10 31 31 H 1.09000 * 109.50035 * 299.19740 * 12 11 10 32 32 H 1.08998 * 109.52430 * 182.43981 * 13 12 11 33 33 H 1.09001 * 109.52058 * 62.25268 * 13 12 11 34 34 H 1.09005 * 109.47236 * 305.19710 * 16 14 13 35 35 H 1.08997 * 109.47280 * 185.19495 * 16 14 13 36 36 H 1.08005 * 120.02462 * 0.04734 * 19 18 17 37 37 H 1.07995 * 119.97654 * 180.02562 * 20 19 18 38 38 H 1.08001 * 119.94693 * 179.97438 * 21 20 19 39 39 H 1.08003 * 119.97497 * 179.69739 * 22 21 20 40 40 H 1.08001 * 120.03087 * 180.29851 * 23 22 21 41 41 H 1.08997 * 109.46612 * 65.81879 * 24 10 9 42 42 H 1.09005 * 109.46107 * 305.85204 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2012 -3.6131 0.1197 11 6 2.9838 -3.5060 1.3576 12 6 3.8554 -4.7531 1.5212 13 6 4.7892 -4.8791 0.3144 14 6 3.9509 -4.9402 -0.9656 15 1 3.3163 -5.8262 -0.9437 16 6 4.8781 -5.0057 -2.1808 17 8 5.6110 -6.2323 -2.1552 18 6 6.4858 -6.4497 -3.1722 19 6 7.2307 -7.6194 -3.2099 20 6 8.1197 -7.8378 -4.2445 21 6 8.2677 -6.8915 -5.2417 22 6 7.5306 -5.7223 -5.2033 23 6 6.6359 -5.5019 -4.1742 24 6 3.0765 -3.6875 -1.0570 25 1 -0.4850 0.8400 0.0004 26 1 0.6931 -2.5965 -0.9318 27 1 0.5592 -2.5193 0.8414 28 1 3.6198 -2.6220 1.3100 29 1 2.3076 -3.4214 2.2085 30 1 4.4477 -4.6662 2.4321 31 1 3.2193 -5.6360 1.5836 32 1 5.3816 -5.7895 0.4056 33 1 5.4519 -4.0146 0.2748 34 1 5.5732 -4.1665 -2.1532 35 1 4.2846 -4.9561 -3.0937 36 1 7.1155 -8.3588 -2.4312 37 1 8.6995 -8.7484 -4.2745 38 1 8.9634 -7.0639 -6.0495 39 1 7.6516 -4.9825 -5.9808 40 1 6.0569 -4.5906 -4.1472 41 1 3.7121 -2.8028 -1.0935 42 1 2.4678 -3.7347 -1.9600 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096411352.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:41 Heat of formation + Delta-G solvation = -25.559141 kcal Electronic energy + Delta-G solvation = -20976.739457 eV Core-core repulsion = 17921.157361 eV Total energy + Delta-G solvation = -3055.582096 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.20193 -38.54462 -37.23311 -33.88505 -32.10994 -31.34303 -30.98330 -29.73068 -26.81383 -25.97008 -23.92999 -22.86049 -22.17628 -21.71409 -20.48693 -19.22560 -18.21505 -16.44033 -16.14193 -15.86025 -15.82035 -15.07553 -14.56111 -14.32260 -14.16407 -13.86884 -13.53072 -13.29882 -13.24725 -12.87522 -12.46179 -12.36047 -11.78064 -11.68725 -11.60418 -11.13011 -11.06912 -11.01059 -10.88043 -10.51210 -10.39626 -10.37756 -10.08985 -9.81881 -9.79946 -9.46268 -9.14615 -8.46439 -8.28043 -7.19840 -6.05554 -4.15257 1.19915 1.33497 3.18053 3.24256 3.31603 3.34038 3.66880 4.37372 4.68420 4.74501 4.86681 4.97754 5.01510 5.15029 5.22893 5.24710 5.27281 5.33523 5.48404 5.53222 5.62054 5.75149 5.86585 5.88618 6.02906 6.09210 6.19976 6.27249 6.30263 6.38139 6.38467 6.44326 6.48496 6.63679 6.71458 6.75501 6.90862 7.26184 7.41247 7.49456 7.86892 8.03814 8.26528 8.28343 8.95326 9.51823 10.99282 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022811 B = 0.003706 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.204381 B = 7552.601675 C = 8303.357653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.065 3.935 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.550 4.550 8 H 0.056 0.944 9 C 0.187 3.813 10 N -0.540 5.540 11 C 0.063 3.937 12 C -0.118 4.118 13 C -0.109 4.109 14 C -0.083 4.083 15 H 0.084 0.916 16 C 0.066 3.934 17 O -0.311 6.311 18 C 0.137 3.863 19 C -0.158 4.158 20 C -0.083 4.083 21 C -0.167 4.167 22 C -0.080 4.080 23 C -0.211 4.211 24 C 0.073 3.927 25 H 0.263 0.737 26 H 0.027 0.973 27 H 0.036 0.964 28 H 0.038 0.962 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.129 0.871 41 H 0.039 0.961 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.149 -13.020 -6.575 20.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.590 4.590 8 H 0.075 0.925 9 C 0.062 3.938 10 N -0.263 5.263 11 C -0.065 4.065 12 C -0.155 4.155 13 C -0.147 4.147 14 C -0.102 4.102 15 H 0.102 0.898 16 C -0.010 4.010 17 O -0.224 6.224 18 C 0.091 3.909 19 C -0.176 4.176 20 C -0.101 4.101 21 C -0.185 4.185 22 C -0.098 4.098 23 C -0.230 4.230 24 C -0.056 4.056 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.147 0.853 41 H 0.057 0.943 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.638 -13.441 -6.364 20.178 hybrid contribution 0.864 2.106 -0.257 2.291 sum 14.502 -11.335 -6.621 19.561 Atomic orbital electron populations 1.69940 1.06009 1.26861 1.50069 1.24961 0.94761 0.99127 0.94902 0.86661 0.79933 0.83681 0.78151 1.20629 1.21080 1.19968 1.21753 0.93303 0.92136 1.51768 0.92546 1.19754 0.90828 0.85371 0.97870 1.62386 1.17076 1.46392 1.00493 1.21869 0.95715 0.95391 0.93562 1.21637 0.97596 0.99485 0.96828 1.21544 0.97450 1.01219 0.94458 1.21260 0.95640 1.00869 0.92418 0.89772 1.22944 0.93879 0.84191 0.99973 1.86077 1.51826 1.40678 1.43836 1.19106 0.90103 0.94128 0.87571 1.20461 0.99140 0.96888 1.01146 1.20942 0.96899 0.98922 0.93357 1.21028 1.02195 0.95121 1.00156 1.20967 0.94678 0.96992 0.97209 1.21372 1.03768 1.00830 0.96985 1.21746 0.94657 0.94146 0.95063 0.92770 0.95449 0.94589 0.94363 0.91678 0.92459 0.91793 0.92064 0.92639 0.92028 0.91860 0.85316 0.85610 0.86166 0.85934 0.85273 0.94313 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.55 -14.93 7.72 -34.44 -0.27 -15.20 16 8 H 0.06 1.52 5.86 -52.48 -0.31 1.21 16 9 C 0.19 4.78 5.12 -4.98 -0.03 4.75 16 10 N -0.54 -11.46 4.86 -236.11 -1.15 -12.61 16 11 C 0.06 1.23 5.03 -3.84 -0.02 1.21 16 12 C -0.12 -1.84 6.09 -26.66 -0.16 -2.01 16 13 C -0.11 -1.63 5.15 -26.61 -0.14 -1.77 16 14 C -0.08 -1.28 2.59 -90.54 -0.23 -1.51 16 15 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 16 C 0.07 0.89 4.12 37.15 0.15 1.04 16 17 O -0.31 -4.35 9.73 -19.42 -0.19 -4.54 16 18 C 0.14 1.76 6.69 -39.22 -0.26 1.50 16 19 C -0.16 -1.77 9.99 -39.44 -0.39 -2.17 16 20 C -0.08 -0.79 10.04 -39.61 -0.40 -1.19 16 21 C -0.17 -1.56 10.04 -39.56 -0.40 -1.96 16 22 C -0.08 -0.82 10.04 -39.61 -0.40 -1.22 16 23 C -0.21 -2.49 9.04 -39.43 -0.36 -2.84 16 24 C 0.07 1.36 4.40 -3.83 -0.02 1.35 16 25 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.03 0.74 8.08 -51.93 -0.42 0.32 16 27 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.04 0.81 6.73 -51.93 -0.35 0.46 16 29 H 0.06 1.30 8.12 -51.92 -0.42 0.88 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.86 7.90 -51.93 -0.41 0.45 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.81 7.66 -51.93 -0.40 0.41 16 35 H 0.06 0.81 7.66 -51.93 -0.40 0.41 16 36 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 37 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 39 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 40 H 0.13 1.43 6.30 -52.49 -0.33 1.10 16 41 H 0.04 0.78 6.86 -51.93 -0.36 0.42 16 42 H 0.07 1.23 8.08 -51.93 -0.42 0.82 16 LS Contribution 334.77 15.07 5.04 5.04 Total: -1.00 -29.25 334.77 -10.34 -39.58 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -6.75 Total: -0.13 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -3.01 Total: -18.29 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: -0.41 Total: -37.88 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -0.19 Total: -4.54 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.25 -10.34 -39.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096411352.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.025 kcal (2) G-P(sol) polarization free energy of solvation -29.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds