Wall clock time and date at job start Mon Mar 30 2020 01:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99805 * 2 1 4 4 H 1.48505 * 109.46911 * 269.99949 * 3 2 1 5 5 H 1.48494 * 109.47299 * 29.99869 * 3 2 1 6 6 H 1.48502 * 109.46880 * 150.00056 * 3 2 1 7 7 C 1.37872 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99937 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00285 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47357 * 185.00495 * 9 7 2 11 11 C 1.46848 * 110.99894 * 59.32401 * 10 9 7 12 12 C 1.53031 * 109.52518 * 174.15936 * 11 10 9 13 13 C 1.53112 * 109.27862 * 59.17651 * 12 11 10 14 14 C 1.53121 * 109.16626 * 302.34864 * 13 12 11 15 15 H 1.09004 * 109.53190 * 297.69364 * 14 13 12 16 16 C 1.52993 * 109.50639 * 177.59314 * 14 13 12 17 17 O 1.42903 * 109.47389 * 65.19629 * 16 14 13 18 18 C 1.35898 * 117.00497 * 179.97438 * 17 16 14 19 19 C 1.38726 * 120.05957 * 179.97438 * 18 17 16 20 20 C 1.38140 * 119.94895 * 180.02562 * 19 18 17 21 21 C 1.38266 * 120.05207 * 0.02562 * 20 19 18 22 22 C 1.38264 * 120.11226 * 0.25485 * 21 20 19 23 23 C 1.38145 * 120.05580 * 359.44882 * 22 21 20 24 24 C 1.46844 * 111.00117 * 295.11502 * 10 9 7 25 25 H 0.97002 * 120.00219 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46729 * 65.00808 * 9 7 2 27 27 H 1.08991 * 109.47352 * 305.00911 * 9 7 2 28 28 H 1.09002 * 109.46498 * 294.17946 * 11 10 9 29 29 H 1.09008 * 109.45905 * 54.15330 * 11 10 9 30 30 H 1.08998 * 109.50561 * 179.11981 * 12 11 10 31 31 H 1.09000 * 109.50035 * 299.19740 * 12 11 10 32 32 H 1.08998 * 109.52430 * 182.43981 * 13 12 11 33 33 H 1.09001 * 109.52058 * 62.25268 * 13 12 11 34 34 H 1.09005 * 109.47236 * 305.19710 * 16 14 13 35 35 H 1.08997 * 109.47280 * 185.19495 * 16 14 13 36 36 H 1.08005 * 120.02462 * 0.04734 * 19 18 17 37 37 H 1.07995 * 119.97654 * 180.02562 * 20 19 18 38 38 H 1.08001 * 119.94693 * 179.97438 * 21 20 19 39 39 H 1.08003 * 119.97497 * 179.69739 * 22 21 20 40 40 H 1.08001 * 120.03087 * 180.29851 * 23 22 21 41 41 H 1.08997 * 109.46612 * 65.81879 * 24 10 9 42 42 H 1.09005 * 109.46107 * 305.85204 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2012 -3.6131 0.1197 11 6 2.9838 -3.5060 1.3576 12 6 3.8554 -4.7531 1.5212 13 6 4.7892 -4.8791 0.3144 14 6 3.9509 -4.9402 -0.9656 15 1 3.3163 -5.8262 -0.9437 16 6 4.8781 -5.0057 -2.1808 17 8 5.6110 -6.2323 -2.1552 18 6 6.4858 -6.4497 -3.1722 19 6 7.2307 -7.6194 -3.2099 20 6 8.1197 -7.8378 -4.2445 21 6 8.2677 -6.8915 -5.2417 22 6 7.5306 -5.7223 -5.2033 23 6 6.6359 -5.5019 -4.1742 24 6 3.0765 -3.6875 -1.0570 25 1 -0.4850 0.8400 0.0004 26 1 0.6931 -2.5965 -0.9318 27 1 0.5592 -2.5193 0.8414 28 1 3.6198 -2.6220 1.3100 29 1 2.3076 -3.4214 2.2085 30 1 4.4477 -4.6662 2.4321 31 1 3.2193 -5.6360 1.5836 32 1 5.3816 -5.7895 0.4056 33 1 5.4519 -4.0146 0.2748 34 1 5.5732 -4.1665 -2.1532 35 1 4.2846 -4.9561 -3.0937 36 1 7.1155 -8.3588 -2.4312 37 1 8.6995 -8.7484 -4.2745 38 1 8.9634 -7.0639 -6.0495 39 1 7.6516 -4.9825 -5.9808 40 1 6.0569 -4.5906 -4.1472 41 1 3.7121 -2.8028 -1.0935 42 1 2.4678 -3.7347 -1.9600 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096411352.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:41 Heat of formation + Delta-G solvation = -41.887889 kcal Electronic energy + Delta-G solvation = -20977.447525 eV Core-core repulsion = 17921.157361 eV Total energy + Delta-G solvation = -3056.290164 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.15269 -39.92697 -38.24460 -35.63130 -33.92306 -32.67626 -31.85432 -30.61806 -28.76778 -27.18757 -25.75433 -23.80671 -23.23538 -23.10571 -21.86257 -20.68876 -19.17104 -18.44309 -17.14939 -17.01621 -16.81265 -16.57859 -16.00091 -15.79599 -15.32776 -15.10720 -14.92977 -14.57088 -14.37305 -14.28265 -13.88244 -13.46911 -13.34107 -13.08011 -12.89711 -12.87750 -12.46422 -12.32900 -12.18178 -12.11292 -11.89087 -11.84406 -11.71017 -11.48390 -11.21033 -11.03994 -10.62794 -9.92911 -9.14070 -9.04213 -8.16994 -6.37497 0.41640 0.52293 1.35281 1.35953 1.46416 2.16445 2.35366 2.87648 3.07488 3.37000 3.74091 3.80877 3.95884 4.02168 4.03438 4.24417 4.29813 4.35947 4.40537 4.45477 4.52648 4.57114 4.62520 4.72137 4.79606 4.91775 4.97011 4.97154 5.11144 5.11741 5.23933 5.27146 5.29168 5.34871 5.40835 5.49235 5.51494 5.62456 5.72313 5.90105 6.03241 6.24539 6.46167 6.54828 6.83694 7.34331 8.85198 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022811 B = 0.003706 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.204381 B = 7552.601675 C = 8303.357653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.957 3.043 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.557 4.557 8 H 0.057 0.943 9 C 0.200 3.800 10 N -0.542 5.542 11 C 0.063 3.937 12 C -0.108 4.108 13 C -0.105 4.105 14 C -0.072 4.072 15 H 0.082 0.918 16 C 0.074 3.926 17 O -0.322 6.322 18 C 0.108 3.892 19 C -0.169 4.169 20 C -0.082 4.082 21 C -0.165 4.165 22 C -0.089 4.089 23 C -0.226 4.226 24 C 0.076 3.924 25 H 0.266 0.734 26 H 0.004 0.996 27 H 0.007 0.993 28 H 0.019 0.981 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.136 0.864 37 H 0.155 0.845 38 H 0.148 0.852 39 H 0.142 0.858 40 H 0.128 0.872 41 H 0.024 0.976 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.754 -13.795 -7.315 22.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.188 4.188 3 Si 0.782 3.218 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.596 4.596 8 H 0.075 0.925 9 C 0.073 3.927 10 N -0.265 5.265 11 C -0.065 4.065 12 C -0.145 4.145 13 C -0.142 4.142 14 C -0.091 4.091 15 H 0.101 0.899 16 C -0.001 4.001 17 O -0.236 6.236 18 C 0.063 3.937 19 C -0.188 4.188 20 C -0.100 4.100 21 C -0.183 4.183 22 C -0.106 4.106 23 C -0.245 4.245 24 C -0.053 4.053 25 H 0.074 0.926 26 H 0.022 0.978 27 H 0.026 0.974 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.154 0.846 37 H 0.173 0.827 38 H 0.166 0.834 39 H 0.160 0.840 40 H 0.146 0.854 41 H 0.042 0.958 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 16.263 -14.237 -7.109 22.754 hybrid contribution 0.081 2.270 -0.080 2.273 sum 16.345 -11.966 -7.190 21.495 Atomic orbital electron populations 1.70064 1.07598 1.27929 1.50998 1.25823 0.95606 1.02864 0.94476 0.85573 0.78675 0.79099 0.78469 1.19793 1.20604 1.19244 1.21975 0.93372 0.92929 1.51358 0.92516 1.19412 0.91225 0.86720 0.95318 1.62319 1.17774 1.44137 1.02275 1.21917 0.95457 0.96899 0.92224 1.21578 0.97303 0.97295 0.98352 1.21525 0.97178 1.01989 0.93526 1.21073 0.95530 0.98597 0.93919 0.89938 1.22727 0.93725 0.84628 0.99047 1.86013 1.52436 1.40416 1.44763 1.19390 0.90957 0.95356 0.87971 1.20726 0.99403 0.96589 1.02081 1.21328 0.96249 0.99964 0.92477 1.21432 1.01857 0.94419 1.00596 1.21289 0.94226 0.97968 0.97163 1.21510 1.04580 1.00833 0.97562 1.21731 0.94338 0.95455 0.93730 0.92552 0.97805 0.97446 0.96237 0.92761 0.90053 0.91218 0.90271 0.92822 0.91753 0.91460 0.84642 0.82727 0.83432 0.84018 0.85418 0.95822 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.30 13.29 21.45 0.28 -55.02 16 2 C 0.01 0.66 5.46 84.65 0.46 1.13 16 3 Si 0.96 43.78 29.54 68.60 2.03 45.80 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.56 -30.96 7.72 25.60 0.20 -30.76 16 8 H 0.06 3.10 5.86 -2.91 -0.02 3.08 16 9 C 0.20 10.65 5.12 85.56 0.44 11.09 16 10 N -0.54 -23.61 4.86 -900.93 -4.38 -27.98 16 11 C 0.06 2.49 5.03 86.32 0.43 2.93 16 12 C -0.11 -3.21 6.09 30.64 0.19 -3.03 16 13 C -0.10 -2.96 5.15 30.67 0.16 -2.81 16 14 C -0.07 -2.18 2.59 -10.74 -0.03 -2.21 16 15 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 16 C 0.07 1.97 4.12 71.98 0.30 2.27 16 17 O -0.32 -8.73 9.73 -92.40 -0.90 -9.63 16 18 C 0.11 2.68 6.69 22.51 0.15 2.83 16 19 C -0.17 -3.53 9.99 22.36 0.22 -3.31 16 20 C -0.08 -1.33 10.04 22.25 0.22 -1.11 16 21 C -0.17 -2.60 10.04 22.28 0.22 -2.37 16 22 C -0.09 -1.62 10.04 22.25 0.22 -1.40 16 23 C -0.23 -5.11 9.04 22.37 0.20 -4.91 16 24 C 0.08 2.90 4.40 86.33 0.38 3.28 16 25 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 26 H 0.00 0.22 8.08 -2.39 -0.02 0.20 16 27 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.02 0.83 6.73 -2.39 -0.02 0.82 16 29 H 0.05 2.21 8.12 -2.38 -0.02 2.19 16 30 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.08 2.02 7.90 -2.39 -0.02 2.00 16 33 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.06 1.66 7.66 -2.38 -0.02 1.64 16 35 H 0.07 1.71 7.66 -2.39 -0.02 1.69 16 36 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 37 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 38 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 39 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 40 H 0.13 2.79 6.30 -2.91 -0.02 2.77 16 41 H 0.02 0.97 6.86 -2.39 -0.02 0.95 16 42 H 0.06 2.32 8.08 -2.38 -0.02 2.30 16 Total: -1.00 -63.68 334.77 1.79 -61.89 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.98 Total: 13.31 kcal Atomic # 6 Polarization: -32.14 SS G_CDS: 3.77 Total: -28.37 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -4.09 Total: -83.00 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -0.90 Total: -9.63 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -63.68 1.79 -61.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096411352.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.005 kcal (2) G-P(sol) polarization free energy of solvation -63.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds