Wall clock time and date at job start Mon Mar 30 2020 01:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99630 * 2 1 4 4 H 1.48506 * 109.46980 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47051 * 299.99619 * 3 2 1 6 6 H 1.48497 * 109.47033 * 59.99994 * 3 2 1 7 7 C 1.37875 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99954 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99671 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46899 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.47257 * 175.09152 * 10 9 7 12 12 C 1.46902 * 110.99433 * 74.01071 * 11 10 9 13 13 C 1.50701 * 109.46641 * 189.99903 * 12 11 10 14 14 C 1.38292 * 119.97383 * 269.97685 * 13 12 11 15 15 C 1.38250 * 120.10825 * 180.02562 * 14 13 12 16 16 C 1.38160 * 120.05679 * 359.68961 * 15 14 13 17 17 C 1.38716 * 119.94335 * 0.60881 * 16 15 14 18 18 O 1.35903 * 120.05283 * 179.68385 * 17 16 15 19 19 C 1.38126 * 119.96948 * 90.00208 * 13 12 11 20 20 C 1.46895 * 111.00180 * 197.96634 * 11 10 9 21 21 C 1.52998 * 109.47097 * 68.33320 * 20 11 10 22 22 C 1.52999 * 117.50177 * 243.48517 * 21 20 11 23 23 C 1.53006 * 117.49565 * 174.82554 * 21 20 11 24 24 H 0.97000 * 120.00109 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.46904 * 60.00616 * 9 7 2 26 26 H 1.09000 * 109.47553 * 300.00007 * 9 7 2 27 27 H 1.09001 * 109.46814 * 55.09334 * 10 9 7 28 28 H 1.09001 * 109.47557 * 295.09341 * 10 9 7 29 29 H 1.09007 * 109.47072 * 70.00731 * 12 11 10 30 30 H 1.08997 * 109.47346 * 309.99696 * 12 11 10 31 31 H 1.07992 * 119.94363 * 0.02562 * 14 13 12 32 32 H 1.08001 * 119.96586 * 179.97438 * 15 14 13 33 33 H 1.07996 * 120.02930 * 180.29518 * 16 15 14 34 34 H 0.96698 * 113.99523 * 269.72559 * 18 17 16 35 35 H 1.08001 * 120.02899 * 359.97438 * 19 13 12 36 36 H 1.08998 * 109.47298 * 188.33667 * 20 11 10 37 37 H 1.09007 * 109.47289 * 308.33823 * 20 11 10 38 38 H 1.08996 * 115.54938 * 29.16113 * 21 20 11 39 39 H 1.09005 * 117.49798 * 359.97438 * 22 21 20 40 40 H 1.08993 * 117.50253 * 145.02338 * 22 21 20 41 41 H 1.08999 * 117.49762 * 214.98247 * 23 21 20 42 42 H 1.08994 * 117.50073 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5149 -4.9309 0.1211 12 6 0.8396 -5.2703 -1.1386 13 6 -0.0904 -6.4343 -0.9122 14 6 0.3687 -7.7281 -1.0788 15 6 -0.4822 -8.7979 -0.8724 16 6 -1.7921 -8.5770 -0.4926 17 6 -2.2567 -7.2801 -0.3308 18 8 -3.5466 -7.0601 0.0364 19 6 -1.4009 -6.2080 -0.5388 20 6 2.4094 -6.0152 0.5476 21 6 2.8544 -5.7712 1.9910 22 6 4.3454 -5.5358 2.2405 23 6 3.6975 -6.8567 2.6633 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8881 26 1 0.6247 -2.5564 0.8919 27 1 2.9291 -3.5556 0.8437 28 1 2.8120 -3.6554 -0.9296 29 1 1.5834 -5.5401 -1.8884 30 1 0.2674 -4.4105 -1.4872 31 1 1.3936 -7.9029 -1.3708 32 1 -0.1213 -9.8074 -1.0036 33 1 -2.4551 -9.4132 -0.3268 34 1 -4.1577 -6.9716 -0.7077 35 1 -1.7590 -5.1974 -0.4088 36 1 1.8819 -6.9670 0.4859 37 1 3.2840 -6.0417 -0.1026 38 1 2.1473 -5.2247 2.6149 39 1 5.0095 -5.5552 1.3763 40 1 4.6193 -4.8347 3.0287 41 1 3.5453 -7.0238 3.7296 42 1 3.9355 -7.7443 2.0772 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112978768.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:56 Heat of formation + Delta-G solvation = 2.196414 kcal Electronic energy + Delta-G solvation = -21023.411560 eV Core-core repulsion = 17969.033035 eV Total energy + Delta-G solvation = -3054.378525 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.80720 -38.20373 -36.77385 -35.61660 -33.07561 -31.49618 -29.97900 -29.30338 -27.01030 -25.25959 -22.99432 -22.48737 -22.22796 -21.20441 -20.41608 -19.62904 -17.95785 -16.50151 -16.32123 -15.72976 -15.45359 -15.19672 -14.81209 -14.53370 -14.22870 -13.95119 -13.56932 -13.28586 -12.48196 -12.46538 -12.33275 -12.08508 -12.01126 -11.54382 -11.40276 -11.29696 -11.09221 -10.95899 -10.83851 -10.55006 -10.32070 -10.14420 -9.91737 -9.60979 -9.34907 -9.08643 -8.73555 -8.51262 -8.31184 -7.71790 -5.97537 -3.99567 1.29827 1.43021 3.32176 3.39734 3.43483 3.65884 3.99365 4.22878 4.43166 4.57342 4.89069 4.93302 5.04478 5.12392 5.18830 5.30823 5.38501 5.41283 5.48744 5.65533 5.68585 5.74312 5.79005 5.92128 5.97004 6.05208 6.10204 6.13900 6.25928 6.33880 6.41692 6.48177 6.53007 6.61894 6.72696 6.90535 7.02892 7.50499 7.56640 7.70295 7.81837 7.93953 8.12058 8.46186 9.08076 9.64058 11.13850 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013727 B = 0.004968 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.352140 B = 5634.518744 C = 7165.059532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.030 3.970 10 C 0.063 3.937 11 N -0.529 5.529 12 C 0.089 3.911 13 C -0.049 4.049 14 C -0.127 4.127 15 C -0.109 4.109 16 C -0.153 4.153 17 C 0.101 3.899 18 O -0.500 6.500 19 C -0.119 4.119 20 C 0.080 3.920 21 C -0.135 4.135 22 C -0.183 4.183 23 C -0.184 4.184 24 H 0.259 0.741 25 H 0.013 0.987 26 H 0.025 0.975 27 H 0.068 0.932 28 H 0.019 0.981 29 H 0.037 0.963 30 H 0.094 0.906 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.387 0.613 35 H 0.134 0.866 36 H 0.076 0.924 37 H 0.026 0.974 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.199 -17.794 -1.767 17.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.008 4.008 10 C -0.064 4.064 11 N -0.252 5.252 12 C -0.038 4.038 13 C -0.049 4.049 14 C -0.146 4.146 15 C -0.127 4.127 16 C -0.172 4.172 17 C 0.057 3.943 18 O -0.310 6.310 19 C -0.138 4.138 20 C -0.048 4.048 21 C -0.154 4.154 22 C -0.220 4.220 23 C -0.222 4.222 24 H 0.069 0.931 25 H 0.031 0.969 26 H 0.044 0.956 27 H 0.086 0.914 28 H 0.037 0.963 29 H 0.055 0.945 30 H 0.113 0.887 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.243 0.757 35 H 0.152 0.848 36 H 0.094 0.906 37 H 0.044 0.956 38 H 0.131 0.869 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.066 -17.624 -0.841 17.644 hybrid contribution 0.849 0.899 -1.003 1.592 sum 0.783 -16.725 -1.843 16.845 Atomic orbital electron populations 1.69981 1.05997 1.26392 1.50862 1.24979 0.94796 0.99099 0.95378 0.86575 0.80116 0.83975 0.77557 1.19793 1.21077 1.21017 1.21230 0.92984 0.91067 1.50568 0.92807 1.19070 0.93950 0.90089 0.97640 1.22397 0.96880 0.88157 0.98931 1.62086 1.30846 1.03147 1.29162 1.21112 0.95568 0.95968 0.91137 1.19796 0.93906 0.94386 0.96833 1.21081 0.99528 0.92210 1.01732 1.20914 0.93266 0.98780 0.99710 1.21324 0.96959 0.96291 1.02589 1.18490 0.85015 0.92063 0.98724 1.84840 1.15870 1.94347 1.35894 1.21432 0.93706 0.99553 0.99123 1.21755 0.94540 0.95470 0.93045 1.22280 0.93580 1.02087 0.97446 1.23033 0.96234 0.99346 1.03355 1.22930 1.05572 0.92957 1.00698 0.93102 0.96869 0.95627 0.91377 0.96310 0.94495 0.88730 0.86274 0.86015 0.85945 0.75729 0.84805 0.90602 0.95550 0.86862 0.89237 0.88937 0.89103 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.88 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 7 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.77 4.98 -27.88 -0.14 0.64 16 10 C 0.06 1.31 4.78 -3.82 -0.02 1.30 16 11 N -0.53 -9.52 4.42 -236.07 -1.04 -10.57 16 12 C 0.09 1.47 4.96 -4.97 -0.02 1.44 16 13 C -0.05 -0.71 4.92 -104.64 -0.51 -1.23 16 14 C -0.13 -1.58 7.85 -39.56 -0.31 -1.89 16 15 C -0.11 -1.21 10.04 -39.61 -0.40 -1.61 16 16 C -0.15 -1.81 9.99 -39.43 -0.39 -2.20 16 17 C 0.10 1.37 6.70 -39.22 -0.26 1.11 16 18 O -0.50 -6.23 13.50 -19.44 -0.26 -6.49 16 19 C -0.12 -1.80 9.64 -39.43 -0.38 -2.18 16 20 C 0.08 1.22 5.05 -3.83 -0.02 1.20 16 21 C -0.14 -2.02 4.78 -90.62 -0.43 -2.45 16 22 C -0.18 -2.44 9.99 -26.69 -0.27 -2.70 16 23 C -0.18 -2.23 10.26 -26.69 -0.27 -2.51 16 24 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.01 0.35 6.87 -51.93 -0.36 0.00 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 1.44 6.81 -51.93 -0.35 1.08 16 28 H 0.02 0.39 8.02 -51.93 -0.42 -0.03 16 29 H 0.04 0.56 8.06 -51.93 -0.42 0.14 16 30 H 0.09 1.72 6.55 -51.93 -0.34 1.38 16 31 H 0.12 1.30 7.82 -52.49 -0.41 0.89 16 32 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 33 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.39 2.84 9.06 45.56 0.41 3.25 16 35 H 0.13 2.16 8.06 -52.49 -0.42 1.74 16 36 H 0.08 1.09 5.33 -51.93 -0.28 0.81 16 37 H 0.03 0.39 7.83 -51.93 -0.41 -0.02 16 38 H 0.11 1.90 8.14 -51.93 -0.42 1.48 16 39 H 0.09 1.16 8.03 -51.93 -0.42 0.74 16 40 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 345.89 15.07 5.21 5.21 Total: -1.00 -31.55 345.89 -10.13 -41.68 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -5.91 Total: 4.14 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -3.85 Total: -24.50 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: -0.31 Total: -36.71 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.26 Total: -6.49 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.55 -10.13 -41.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112978768.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.875 kcal (2) G-P(sol) polarization free energy of solvation -31.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds