Wall clock time and date at job start Mon Mar 30 2020 01:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99630 * 2 1 4 4 H 1.48506 * 109.46980 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47051 * 299.99619 * 3 2 1 6 6 H 1.48497 * 109.47033 * 59.99994 * 3 2 1 7 7 C 1.37875 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99954 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99671 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46899 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.47257 * 175.09152 * 10 9 7 12 12 C 1.46902 * 110.99433 * 74.01071 * 11 10 9 13 13 C 1.50701 * 109.46641 * 189.99903 * 12 11 10 14 14 C 1.38292 * 119.97383 * 269.97685 * 13 12 11 15 15 C 1.38250 * 120.10825 * 180.02562 * 14 13 12 16 16 C 1.38160 * 120.05679 * 359.68961 * 15 14 13 17 17 C 1.38716 * 119.94335 * 0.60881 * 16 15 14 18 18 O 1.35903 * 120.05283 * 179.68385 * 17 16 15 19 19 C 1.38126 * 119.96948 * 90.00208 * 13 12 11 20 20 C 1.46895 * 111.00180 * 197.96634 * 11 10 9 21 21 C 1.52998 * 109.47097 * 68.33320 * 20 11 10 22 22 C 1.52999 * 117.50177 * 243.48517 * 21 20 11 23 23 C 1.53006 * 117.49565 * 174.82554 * 21 20 11 24 24 H 0.97000 * 120.00109 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.46904 * 60.00616 * 9 7 2 26 26 H 1.09000 * 109.47553 * 300.00007 * 9 7 2 27 27 H 1.09001 * 109.46814 * 55.09334 * 10 9 7 28 28 H 1.09001 * 109.47557 * 295.09341 * 10 9 7 29 29 H 1.09007 * 109.47072 * 70.00731 * 12 11 10 30 30 H 1.08997 * 109.47346 * 309.99696 * 12 11 10 31 31 H 1.07992 * 119.94363 * 0.02562 * 14 13 12 32 32 H 1.08001 * 119.96586 * 179.97438 * 15 14 13 33 33 H 1.07996 * 120.02930 * 180.29518 * 16 15 14 34 34 H 0.96698 * 113.99523 * 269.72559 * 18 17 16 35 35 H 1.08001 * 120.02899 * 359.97438 * 19 13 12 36 36 H 1.08998 * 109.47298 * 188.33667 * 20 11 10 37 37 H 1.09007 * 109.47289 * 308.33823 * 20 11 10 38 38 H 1.08996 * 115.54938 * 29.16113 * 21 20 11 39 39 H 1.09005 * 117.49798 * 359.97438 * 22 21 20 40 40 H 1.08993 * 117.50253 * 145.02338 * 22 21 20 41 41 H 1.08999 * 117.49762 * 214.98247 * 23 21 20 42 42 H 1.08994 * 117.50073 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5149 -4.9309 0.1211 12 6 0.8396 -5.2703 -1.1386 13 6 -0.0904 -6.4343 -0.9122 14 6 0.3687 -7.7281 -1.0788 15 6 -0.4822 -8.7979 -0.8724 16 6 -1.7921 -8.5770 -0.4926 17 6 -2.2567 -7.2801 -0.3308 18 8 -3.5466 -7.0601 0.0364 19 6 -1.4009 -6.2080 -0.5388 20 6 2.4094 -6.0152 0.5476 21 6 2.8544 -5.7712 1.9910 22 6 4.3454 -5.5358 2.2405 23 6 3.6975 -6.8567 2.6633 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8881 26 1 0.6247 -2.5564 0.8919 27 1 2.9291 -3.5556 0.8437 28 1 2.8120 -3.6554 -0.9296 29 1 1.5834 -5.5401 -1.8884 30 1 0.2674 -4.4105 -1.4872 31 1 1.3936 -7.9029 -1.3708 32 1 -0.1213 -9.8074 -1.0036 33 1 -2.4551 -9.4132 -0.3268 34 1 -4.1577 -6.9716 -0.7077 35 1 -1.7590 -5.1974 -0.4088 36 1 1.8819 -6.9670 0.4859 37 1 3.2840 -6.0417 -0.1026 38 1 2.1473 -5.2247 2.6149 39 1 5.0095 -5.5552 1.3763 40 1 4.6193 -4.8347 3.0287 41 1 3.5453 -7.0238 3.7296 42 1 3.9355 -7.7443 2.0772 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112978768.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:55 Heat of formation + Delta-G solvation = -17.760583 kcal Electronic energy + Delta-G solvation = -21024.276960 eV Core-core repulsion = 17969.033035 eV Total energy + Delta-G solvation = -3055.243925 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.86849 -39.42713 -37.79549 -36.90573 -35.13089 -32.79894 -31.50507 -30.58648 -28.25205 -27.04247 -24.60822 -23.49160 -23.23972 -22.54458 -21.80456 -21.01075 -18.98724 -18.56295 -17.34757 -16.98375 -16.63085 -16.54666 -16.32571 -15.93091 -15.58388 -15.23744 -14.78519 -14.57763 -14.15306 -13.92234 -13.65088 -13.43226 -13.30416 -13.02875 -12.83914 -12.54269 -12.45639 -12.41433 -12.31760 -12.09951 -11.84421 -11.48724 -11.33203 -11.25783 -11.09929 -10.70167 -10.54479 -9.79492 -9.52890 -9.13404 -8.19740 -6.31080 0.30479 0.40957 1.39192 1.39912 1.53110 2.39715 2.63417 2.92947 3.13724 3.20177 3.33852 3.78081 3.92825 3.98570 4.07799 4.16682 4.23639 4.27157 4.39295 4.42649 4.54939 4.57296 4.63844 4.70600 4.80081 4.88085 4.90324 5.01967 5.05650 5.06869 5.13060 5.28766 5.36103 5.46378 5.48336 5.50738 5.64773 5.66981 5.80180 5.95026 6.12600 6.33741 6.34111 6.86593 6.87369 7.38154 8.92690 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013727 B = 0.004968 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.352140 B = 5634.518744 C = 7165.059532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.260 1.260 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.060 0.940 9 C 0.041 3.959 10 C 0.083 3.917 11 N -0.544 5.544 12 C 0.094 3.906 13 C -0.061 4.061 14 C -0.126 4.126 15 C -0.096 4.096 16 C -0.149 4.149 17 C 0.095 3.905 18 O -0.514 6.514 19 C -0.149 4.149 20 C 0.087 3.913 21 C -0.164 4.164 22 C -0.185 4.185 23 C -0.156 4.156 24 H 0.263 0.737 25 H -0.012 1.012 26 H -0.013 1.013 27 H 0.066 0.934 28 H 0.022 0.978 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.140 0.860 32 H 0.161 0.839 33 H 0.149 0.851 34 H 0.408 0.592 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.037 0.963 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.939 -20.164 -1.942 20.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.184 1.184 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.078 0.922 9 C 0.003 3.997 10 C -0.044 4.044 11 N -0.268 5.268 12 C -0.034 4.034 13 C -0.062 4.062 14 C -0.144 4.144 15 C -0.114 4.114 16 C -0.168 4.168 17 C 0.051 3.949 18 O -0.327 6.327 19 C -0.168 4.168 20 C -0.040 4.040 21 C -0.183 4.183 22 C -0.222 4.222 23 C -0.193 4.193 24 H 0.072 0.928 25 H 0.007 0.993 26 H 0.006 0.994 27 H 0.085 0.915 28 H 0.040 0.960 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.158 0.842 32 H 0.178 0.822 33 H 0.166 0.834 34 H 0.266 0.734 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.056 0.944 38 H 0.102 0.898 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.119 0.881 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.670 -20.012 -1.027 20.108 hybrid contribution 0.207 1.579 -0.939 1.848 sum 1.876 -18.433 -1.966 18.632 Atomic orbital electron populations 1.70128 1.07887 1.27625 1.51666 1.25959 0.95696 1.03305 0.94674 0.85398 0.79134 0.78736 0.77764 1.18431 1.20290 1.20476 1.21649 0.93486 0.92229 1.50566 0.92160 1.18873 0.94136 0.92132 0.94553 1.21958 0.95332 0.88201 0.98888 1.61952 1.31476 1.03068 1.30339 1.21009 0.95829 0.95741 0.90784 1.19648 0.93250 0.94860 0.98407 1.21284 1.00817 0.91183 1.01144 1.21338 0.92475 1.00081 0.97483 1.21636 0.97821 0.95877 1.01425 1.18604 0.85154 0.92471 0.98680 1.84775 1.15956 1.94408 1.37518 1.21359 0.94899 0.98913 1.01634 1.21767 0.94368 0.94621 0.93250 1.22193 0.94075 1.04775 0.97226 1.23094 0.94940 1.00504 1.03681 1.23022 1.02226 0.92680 1.01356 0.92841 0.99321 0.99437 0.91512 0.95996 0.92907 0.92122 0.84179 0.82186 0.83357 0.73368 0.87911 0.89215 0.94445 0.89807 0.88518 0.89179 0.88052 0.87243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.32 13.29 21.45 0.28 -58.04 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.54 -31.57 9.11 25.60 0.23 -31.33 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.04 2.24 4.98 29.85 0.15 2.39 16 10 C 0.08 3.64 4.78 86.30 0.41 4.05 16 11 N -0.54 -20.32 4.42 -900.78 -3.98 -24.30 16 12 C 0.09 3.21 4.96 85.56 0.42 3.63 16 13 C -0.06 -1.81 4.92 -19.88 -0.10 -1.91 16 14 C -0.13 -2.83 7.85 22.29 0.17 -2.65 16 15 C -0.10 -1.78 10.04 22.25 0.22 -1.56 16 16 C -0.15 -3.12 9.99 22.37 0.22 -2.90 16 17 C 0.10 2.55 6.70 22.51 0.15 2.70 16 18 O -0.51 -12.81 13.50 -92.46 -1.25 -14.06 16 19 C -0.15 -4.76 9.64 22.37 0.22 -4.55 16 20 C 0.09 2.57 5.05 86.30 0.44 3.00 16 21 C -0.16 -4.78 4.78 -10.79 -0.05 -4.84 16 22 C -0.19 -4.66 9.99 30.62 0.31 -4.36 16 23 C -0.16 -3.36 10.26 30.62 0.31 -3.04 16 24 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 25 H -0.01 -0.68 6.87 -2.38 -0.02 -0.70 16 26 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 27 H 0.07 2.90 6.81 -2.39 -0.02 2.88 16 28 H 0.02 0.93 8.02 -2.39 -0.02 0.91 16 29 H 0.05 1.60 8.06 -2.38 -0.02 1.58 16 30 H 0.06 2.44 6.55 -2.39 -0.02 2.42 16 31 H 0.14 2.54 7.82 -2.91 -0.02 2.52 16 32 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 33 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 34 H 0.41 5.93 9.06 -74.06 -0.67 5.26 16 35 H 0.10 3.80 8.06 -2.91 -0.02 3.77 16 36 H 0.09 2.38 5.33 -2.39 -0.01 2.36 16 37 H 0.04 1.03 7.83 -2.38 -0.02 1.01 16 38 H 0.08 2.93 8.14 -2.39 -0.02 2.92 16 39 H 0.10 2.29 8.03 -2.38 -0.02 2.27 16 40 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -71.22 345.89 0.98 -70.24 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.33 Total: 19.88 kcal Atomic # 6 Polarization: -44.39 SS G_CDS: 3.57 Total: -40.81 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -3.70 Total: -82.34 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -1.25 Total: -14.06 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -71.22 0.98 -70.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112978768.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.477 kcal (2) G-P(sol) polarization free energy of solvation -71.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds