Wall clock time and date at job start Mon Mar 30 2020 01:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00012 * 2 1 4 4 H 1.48505 * 109.47336 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47216 * 299.99554 * 3 2 1 6 6 H 1.48497 * 109.47534 * 59.99506 * 3 2 1 7 7 C 1.37875 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00254 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00231 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47626 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47682 * 179.97438 * 10 9 7 12 12 C 1.48555 * 111.00055 * 285.42297 * 11 10 9 13 13 C 1.54383 * 104.59494 * 200.95710 * 12 11 10 14 14 C 1.54260 * 105.05881 * 23.84997 * 13 12 11 15 15 C 1.48554 * 111.00074 * 169.99829 * 11 10 9 16 16 H 1.09002 * 110.51329 * 40.22009 * 15 11 10 17 17 C 1.52998 * 110.41599 * 277.82192 * 15 11 10 18 18 O 1.42901 * 109.47046 * 298.37459 * 17 15 11 19 19 C 1.35905 * 116.99604 * 179.97438 * 18 17 15 20 20 C 1.38722 * 120.05728 * 359.72917 * 19 18 17 21 21 C 1.38150 * 119.94514 * 179.69912 * 20 19 18 22 22 C 1.38269 * 120.05089 * 0.59411 * 21 20 19 23 23 C 1.38268 * 120.11164 * 359.67978 * 22 21 20 24 24 C 1.38139 * 120.05525 * 0.02562 * 23 22 21 25 25 H 0.96995 * 120.00405 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47250 * 59.99638 * 9 7 2 27 27 H 1.09004 * 109.47382 * 299.99998 * 9 7 2 28 28 H 1.09003 * 109.46916 * 59.99661 * 10 9 7 29 29 H 1.09004 * 109.46925 * 300.00506 * 10 9 7 30 30 H 1.09002 * 110.41248 * 82.17856 * 12 11 10 31 31 H 1.08999 * 110.51132 * 319.78516 * 12 11 10 32 32 H 1.09004 * 110.32194 * 264.96010 * 13 12 11 33 33 H 1.08989 * 110.32402 * 142.74841 * 13 12 11 34 34 H 1.09000 * 110.32580 * 241.10422 * 14 13 12 35 35 H 1.09002 * 110.40979 * 118.94155 * 14 13 12 36 36 H 1.08996 * 109.47090 * 178.37243 * 17 15 11 37 37 H 1.08999 * 109.47084 * 58.37416 * 17 15 11 38 38 H 1.08006 * 120.03385 * 359.97438 * 20 19 18 39 39 H 1.07998 * 119.97718 * 180.27358 * 21 20 19 40 40 H 1.08001 * 119.94619 * 179.70177 * 22 21 20 41 41 H 1.08000 * 119.96731 * 180.02562 * 23 22 21 42 42 H 1.08006 * 120.02930 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 0.9257 -5.2106 1.3384 13 6 0.6824 -6.7351 1.3491 14 6 1.6703 -7.3059 0.3109 15 6 2.4274 -6.0783 -0.2397 16 1 3.3645 -5.9368 0.2987 17 6 2.6933 -6.2430 -1.7374 18 8 1.4645 -6.5222 -2.4114 19 6 1.5253 -6.6968 -3.7578 20 6 2.7415 -6.5959 -4.4173 21 6 2.8017 -6.7800 -5.7852 22 6 1.6489 -7.0524 -6.4985 23 6 0.4346 -7.1479 -5.8442 24 6 0.3702 -6.9706 -4.4757 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5568 0.8903 28 1 2.8719 -3.6043 0.8905 29 1 2.8720 -3.6043 -0.8894 30 1 -0.0157 -4.6746 1.4595 31 1 1.6252 -4.9317 2.1264 32 1 -0.3441 -6.9567 1.0567 33 1 0.8924 -7.1450 2.3369 34 1 1.1288 -7.8078 -0.4910 35 1 2.3655 -7.9970 0.7877 36 1 3.3892 -7.0671 -1.8943 37 1 3.1240 -5.3233 -2.1332 38 1 3.6415 -6.3780 -3.8613 39 1 3.7489 -6.7059 -6.2985 40 1 1.6971 -7.1913 -7.5684 41 1 -0.4643 -7.3612 -6.4036 42 1 -0.5785 -7.0457 -3.9650 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112984993.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:35 Heat of formation + Delta-G solvation = -16.509671 kcal Electronic energy + Delta-G solvation = -21109.548055 eV Core-core repulsion = 18054.358374 eV Total energy + Delta-G solvation = -3055.189682 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.08028 -38.69775 -36.95162 -33.66148 -31.83012 -31.23319 -30.64314 -29.23769 -28.40571 -25.43048 -24.24093 -22.51911 -22.08812 -21.40936 -19.90900 -19.70637 -18.14091 -16.47083 -15.95835 -15.83793 -15.57186 -15.28022 -14.72921 -14.45377 -14.31384 -13.90967 -13.39815 -13.32921 -12.88091 -12.79502 -12.42317 -12.31144 -11.73705 -11.58320 -11.53876 -11.20510 -11.03131 -10.94798 -10.79611 -10.72778 -10.49604 -10.43152 -10.30112 -9.78714 -9.37548 -9.08265 -8.97224 -8.31894 -8.07649 -7.86282 -5.97226 -3.99880 1.37367 1.52206 3.31943 3.36835 3.39261 3.42853 3.84793 4.33239 4.50934 4.77429 4.86134 4.89959 4.98141 5.12037 5.18584 5.33596 5.38648 5.40846 5.42950 5.45723 5.52131 5.58356 5.71546 5.87021 5.95685 6.03998 6.04299 6.14907 6.18838 6.37492 6.39849 6.44180 6.46980 6.52176 6.55078 6.83527 6.97274 7.38401 7.49385 7.63181 7.78585 7.92293 8.11707 8.45378 9.07769 9.63675 11.14188 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013852 B = 0.004666 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.869877 B = 5998.900536 C = 7320.591797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.032 3.968 10 C 0.051 3.949 11 N -0.495 5.495 12 C 0.037 3.963 13 C -0.122 4.122 14 C -0.117 4.117 15 C 0.057 3.943 16 H 0.066 0.934 17 C 0.078 3.922 18 O -0.289 6.289 19 C 0.141 3.859 20 C -0.214 4.214 21 C -0.082 4.082 22 C -0.169 4.169 23 C -0.082 4.082 24 C -0.154 4.154 25 H 0.260 0.740 26 H 0.024 0.976 27 H 0.016 0.984 28 H 0.022 0.978 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.039 0.961 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.125 0.875 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.298 -17.722 -6.095 19.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.005 4.005 10 C -0.076 4.076 11 N -0.220 5.220 12 C -0.091 4.091 13 C -0.160 4.160 14 C -0.155 4.155 15 C -0.052 4.052 16 H 0.083 0.917 17 C 0.002 3.998 18 O -0.201 6.201 19 C 0.094 3.906 20 C -0.233 4.233 21 C -0.100 4.100 22 C -0.187 4.187 23 C -0.100 4.100 24 C -0.173 4.173 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.034 0.966 28 H 0.041 0.959 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.143 0.857 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.583 -17.548 -6.363 19.006 hybrid contribution 1.408 1.153 0.556 1.903 sum 4.992 -16.395 -5.807 18.095 Atomic orbital electron populations 1.69984 1.06012 1.26420 1.50694 1.24985 0.94805 0.99123 0.95339 0.86565 0.80060 0.83936 0.77591 1.19818 1.20975 1.21028 1.21229 0.92925 0.91127 1.50802 0.92866 1.19005 0.93852 0.89825 0.97862 1.22543 0.96974 0.89349 0.98749 1.65458 1.28433 1.01200 1.26883 1.23053 1.00642 0.95000 0.90363 1.22275 0.99970 0.95561 0.98198 1.22259 0.97952 0.96379 0.98877 1.22711 0.96291 0.93475 0.92716 0.91672 1.22700 0.84840 0.99914 0.92346 1.86200 1.33517 1.84437 1.15942 1.19140 0.93870 0.94042 0.83532 1.21284 0.97239 1.08800 0.95949 1.20912 0.98369 0.97289 0.93404 1.20988 0.92841 1.05126 0.99777 1.20936 0.97853 0.97818 0.93415 1.20470 0.97168 1.05871 0.93791 0.93064 0.95716 0.96597 0.95948 0.92444 0.89796 0.94238 0.91188 0.91988 0.90305 0.92052 0.92286 0.91699 0.85694 0.86174 0.86314 0.85679 0.85220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.32 13.29 55.43 0.74 -26.58 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.86 5.09 -27.88 -0.14 0.71 16 10 C 0.05 1.10 4.72 -3.83 -0.02 1.08 16 11 N -0.50 -9.23 4.94 -222.14 -1.10 -10.33 16 12 C 0.04 0.63 5.91 -2.18 -0.01 0.62 16 13 C -0.12 -1.63 7.00 -25.35 -0.18 -1.81 16 14 C -0.12 -1.50 6.45 -25.35 -0.16 -1.66 16 15 C 0.06 0.84 2.68 -66.07 -0.18 0.67 16 16 H 0.07 0.90 8.00 -51.93 -0.42 0.49 16 17 C 0.08 1.09 4.55 37.16 0.17 1.26 16 18 O -0.29 -4.59 8.92 -19.44 -0.17 -4.76 16 19 C 0.14 2.07 6.69 -39.22 -0.26 1.81 16 20 C -0.21 -2.79 9.04 -39.43 -0.36 -3.15 16 21 C -0.08 -0.94 10.04 -39.60 -0.40 -1.34 16 22 C -0.17 -1.86 10.04 -39.56 -0.40 -2.26 16 23 C -0.08 -0.94 10.04 -39.61 -0.40 -1.34 16 24 C -0.15 -2.09 9.99 -39.44 -0.39 -2.48 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.02 0.44 7.47 -51.93 -0.39 0.06 16 28 H 0.02 0.47 7.77 -51.93 -0.40 0.07 16 29 H 0.06 1.22 7.14 -51.93 -0.37 0.85 16 30 H 0.08 1.54 7.85 -51.93 -0.41 1.13 16 31 H 0.04 0.66 7.75 -51.93 -0.40 0.25 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.71 8.14 -51.94 -0.42 0.28 16 34 H 0.08 1.05 7.00 -51.93 -0.36 0.69 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.67 7.68 -51.93 -0.40 0.27 16 37 H 0.06 0.97 6.75 -51.93 -0.35 0.62 16 38 H 0.13 1.46 6.30 -52.48 -0.33 1.13 16 39 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 41 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 42 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 339.36 15.07 5.11 5.11 Total: -1.00 -31.87 339.36 -10.33 -42.20 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -6.75 Total: -0.92 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -3.14 Total: -21.62 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: -0.36 Total: -36.91 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -0.17 Total: -4.76 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.87 -10.33 -42.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112984993.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.692 kcal (2) G-P(sol) polarization free energy of solvation -31.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds