Wall clock time and date at job start Mon Mar 30 2020 01:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00012 * 2 1 4 4 H 1.48505 * 109.47336 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47216 * 299.99554 * 3 2 1 6 6 H 1.48497 * 109.47534 * 59.99506 * 3 2 1 7 7 C 1.37875 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00254 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00231 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47626 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47682 * 179.97438 * 10 9 7 12 12 C 1.48555 * 111.00055 * 285.42297 * 11 10 9 13 13 C 1.54383 * 104.59494 * 200.95710 * 12 11 10 14 14 C 1.54260 * 105.05881 * 23.84997 * 13 12 11 15 15 C 1.48554 * 111.00074 * 169.99829 * 11 10 9 16 16 H 1.09002 * 110.51329 * 40.22009 * 15 11 10 17 17 C 1.52998 * 110.41599 * 277.82192 * 15 11 10 18 18 O 1.42901 * 109.47046 * 298.37459 * 17 15 11 19 19 C 1.35905 * 116.99604 * 179.97438 * 18 17 15 20 20 C 1.38722 * 120.05728 * 359.72917 * 19 18 17 21 21 C 1.38150 * 119.94514 * 179.69912 * 20 19 18 22 22 C 1.38269 * 120.05089 * 0.59411 * 21 20 19 23 23 C 1.38268 * 120.11164 * 359.67978 * 22 21 20 24 24 C 1.38139 * 120.05525 * 0.02562 * 23 22 21 25 25 H 0.96995 * 120.00405 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47250 * 59.99638 * 9 7 2 27 27 H 1.09004 * 109.47382 * 299.99998 * 9 7 2 28 28 H 1.09003 * 109.46916 * 59.99661 * 10 9 7 29 29 H 1.09004 * 109.46925 * 300.00506 * 10 9 7 30 30 H 1.09002 * 110.41248 * 82.17856 * 12 11 10 31 31 H 1.08999 * 110.51132 * 319.78516 * 12 11 10 32 32 H 1.09004 * 110.32194 * 264.96010 * 13 12 11 33 33 H 1.08989 * 110.32402 * 142.74841 * 13 12 11 34 34 H 1.09000 * 110.32580 * 241.10422 * 14 13 12 35 35 H 1.09002 * 110.40979 * 118.94155 * 14 13 12 36 36 H 1.08996 * 109.47090 * 178.37243 * 17 15 11 37 37 H 1.08999 * 109.47084 * 58.37416 * 17 15 11 38 38 H 1.08006 * 120.03385 * 359.97438 * 20 19 18 39 39 H 1.07998 * 119.97718 * 180.27358 * 21 20 19 40 40 H 1.08001 * 119.94619 * 179.70177 * 22 21 20 41 41 H 1.08000 * 119.96731 * 180.02562 * 23 22 21 42 42 H 1.08006 * 120.02930 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 0.9257 -5.2106 1.3384 13 6 0.6824 -6.7351 1.3491 14 6 1.6703 -7.3059 0.3109 15 6 2.4274 -6.0783 -0.2397 16 1 3.3645 -5.9368 0.2987 17 6 2.6933 -6.2430 -1.7374 18 8 1.4645 -6.5222 -2.4114 19 6 1.5253 -6.6968 -3.7578 20 6 2.7415 -6.5959 -4.4173 21 6 2.8017 -6.7800 -5.7852 22 6 1.6489 -7.0524 -6.4985 23 6 0.4346 -7.1479 -5.8442 24 6 0.3702 -6.9706 -4.4757 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5568 0.8903 28 1 2.8719 -3.6043 0.8905 29 1 2.8720 -3.6043 -0.8894 30 1 -0.0157 -4.6746 1.4595 31 1 1.6252 -4.9317 2.1264 32 1 -0.3441 -6.9567 1.0567 33 1 0.8924 -7.1450 2.3369 34 1 1.1288 -7.8078 -0.4910 35 1 2.3655 -7.9970 0.7877 36 1 3.3892 -7.0671 -1.8943 37 1 3.1240 -5.3233 -2.1332 38 1 3.6415 -6.3780 -3.8613 39 1 3.7489 -6.7059 -6.2985 40 1 1.6971 -7.1913 -7.5684 41 1 -0.4643 -7.3612 -6.4036 42 1 -0.5785 -7.0457 -3.9650 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112984993.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:34 Heat of formation + Delta-G solvation = -35.488528 kcal Electronic energy + Delta-G solvation = -21110.371041 eV Core-core repulsion = 18054.358374 eV Total energy + Delta-G solvation = -3056.012667 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.14130 -39.91391 -38.01468 -35.65743 -33.63010 -32.26048 -31.64526 -30.39257 -30.10699 -26.66357 -26.12321 -23.54963 -23.14756 -22.95427 -21.38348 -20.94349 -19.17858 -18.55190 -17.09895 -16.93624 -16.68988 -16.58692 -16.39012 -15.95754 -15.40849 -15.28987 -14.80029 -14.31929 -14.29564 -13.99908 -13.85973 -13.72193 -13.32008 -13.12687 -12.90892 -12.63596 -12.41074 -12.39402 -12.21863 -12.04530 -11.78216 -11.74517 -11.49168 -11.39905 -11.32711 -11.19249 -10.58123 -9.90565 -9.32152 -9.07086 -8.21869 -6.34269 0.44056 0.56598 1.37961 1.38959 1.52119 2.33191 2.38614 2.90485 3.06748 3.11354 3.63929 3.73194 3.95855 4.02229 4.10453 4.22994 4.28778 4.31514 4.34278 4.34833 4.47875 4.54621 4.57238 4.62029 4.71744 4.78730 4.84029 5.02134 5.03713 5.07436 5.13216 5.23617 5.35072 5.43389 5.44468 5.52688 5.60783 5.63814 5.76699 5.93467 6.03611 6.14811 6.30287 6.59271 6.83378 7.35312 8.90808 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013852 B = 0.004666 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.869877 B = 5998.900536 C = 7320.591797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.042 3.958 10 C 0.071 3.929 11 N -0.519 5.519 12 C 0.033 3.967 13 C -0.113 4.113 14 C -0.108 4.108 15 C 0.054 3.946 16 H 0.082 0.918 17 C 0.078 3.922 18 O -0.312 6.312 19 C 0.111 3.889 20 C -0.225 4.225 21 C -0.086 4.086 22 C -0.168 4.168 23 C -0.084 4.084 24 C -0.177 4.177 25 H 0.264 0.736 26 H -0.016 1.016 27 H -0.011 1.011 28 H 0.028 0.972 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.042 0.958 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.049 0.951 38 H 0.134 0.866 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.151 0.849 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.296 -18.681 -6.827 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.079 0.921 9 C 0.004 3.996 10 C -0.057 4.057 11 N -0.243 5.243 12 C -0.095 4.095 13 C -0.151 4.151 14 C -0.146 4.146 15 C -0.054 4.054 16 H 0.099 0.901 17 C 0.002 3.998 18 O -0.226 6.226 19 C 0.065 3.935 20 C -0.244 4.244 21 C -0.104 4.104 22 C -0.186 4.186 23 C -0.102 4.102 24 C -0.196 4.196 25 H 0.072 0.928 26 H 0.002 0.998 27 H 0.008 0.992 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.067 0.933 38 H 0.152 0.848 39 H 0.165 0.835 40 H 0.166 0.834 41 H 0.168 0.832 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.589 -18.531 -7.098 20.616 hybrid contribution 0.728 1.413 0.718 1.744 sum 6.318 -17.118 -6.380 19.330 Atomic orbital electron populations 1.70132 1.07976 1.27741 1.51450 1.26001 0.95732 1.03463 0.94535 0.85358 0.79083 0.78496 0.77845 1.18360 1.20380 1.20177 1.21651 0.93502 0.92209 1.50909 0.92060 1.18810 0.94099 0.92147 0.94528 1.22125 0.95430 0.89256 0.98930 1.65333 1.29608 1.01298 1.28084 1.23071 0.99234 0.97534 0.89694 1.22244 1.00157 0.92624 1.00076 1.22246 0.98064 0.95796 0.98497 1.22881 0.96411 0.92449 0.93635 0.90056 1.22759 0.84961 1.00399 0.91651 1.86151 1.34530 1.84996 1.16902 1.19443 0.95036 0.95692 0.83281 1.21493 0.96953 1.09011 0.96934 1.21305 0.99880 0.96299 0.92894 1.21408 0.92301 1.03626 1.01296 1.21288 0.99373 0.96858 0.92655 1.20689 0.96911 1.07015 0.94992 0.92753 0.99801 0.99245 0.95410 0.92377 0.92687 0.93965 0.91525 0.89143 0.90930 0.88728 0.89148 0.93274 0.84839 0.83535 0.83364 0.83175 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.86 13.29 21.45 0.28 -58.58 16 2 C 0.00 0.03 5.46 84.65 0.46 0.49 16 3 Si 0.97 45.20 29.54 68.60 2.03 47.23 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 7 C -0.54 -32.10 9.11 25.60 0.23 -31.87 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 9 C 0.04 2.35 5.09 29.85 0.15 2.50 16 10 C 0.07 3.12 4.72 86.30 0.41 3.52 16 11 N -0.52 -19.80 4.94 -856.72 -4.23 -24.03 16 12 C 0.03 1.12 5.91 86.45 0.51 1.64 16 13 C -0.11 -2.88 7.00 31.49 0.22 -2.66 16 14 C -0.11 -2.56 6.45 31.49 0.20 -2.35 16 15 C 0.05 1.55 2.68 45.06 0.12 1.67 16 16 H 0.08 2.07 8.00 -2.39 -0.02 2.05 16 17 C 0.08 2.14 4.55 71.98 0.33 2.47 16 18 O -0.31 -10.13 8.92 -92.48 -0.82 -10.96 16 19 C 0.11 3.31 6.69 22.50 0.15 3.46 16 20 C -0.23 -5.71 9.04 22.36 0.20 -5.51 16 21 C -0.09 -1.80 10.04 22.26 0.22 -1.58 16 22 C -0.17 -3.31 10.04 22.28 0.22 -3.08 16 23 C -0.08 -1.82 10.04 22.25 0.22 -1.60 16 24 C -0.18 -4.87 9.99 22.36 0.22 -4.65 16 25 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 26 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 27 H -0.01 -0.66 7.47 -2.38 -0.02 -0.67 16 28 H 0.03 1.18 7.77 -2.39 -0.02 1.16 16 29 H 0.06 2.52 7.14 -2.38 -0.02 2.50 16 30 H 0.05 2.16 7.85 -2.39 -0.02 2.14 16 31 H 0.04 1.41 7.75 -2.39 -0.02 1.39 16 32 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.07 1.84 7.00 -2.39 -0.02 1.82 16 35 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.09 1.88 7.68 -2.39 -0.02 1.86 16 37 H 0.05 1.48 6.75 -2.39 -0.02 1.46 16 38 H 0.13 3.00 6.30 -2.91 -0.02 2.98 16 39 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 40 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 41 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 42 H 0.12 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -71.68 339.36 2.11 -69.57 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.98 Total: 14.31 kcal Atomic # 6 Polarization: -41.43 SS G_CDS: 3.88 Total: -37.54 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -3.95 Total: -82.61 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -0.82 Total: -10.96 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -71.68 2.11 -69.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112984993.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.083 kcal (2) G-P(sol) polarization free energy of solvation -71.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds