Wall clock time and date at job start Mon Mar 30 2020 02:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38259 * 120.00497 * 2 1 4 4 C 1.38206 * 120.00324 * 180.23328 * 3 2 1 5 5 C 1.38261 * 119.99727 * 359.81033 * 4 3 2 6 6 C 1.38210 * 120.00087 * 359.97438 * 5 4 3 7 7 C 1.38219 * 119.99636 * 179.79421 * 2 1 3 8 8 C 1.50693 * 120.00090 * 359.97438 * 7 2 1 9 9 H 1.09003 * 109.47100 * 353.98038 * 8 7 2 10 10 C 1.52999 * 109.47577 * 113.98540 * 8 7 2 11 11 C 1.53012 * 109.47163 * 233.98692 * 8 7 2 12 12 C 1.50693 * 109.46952 * 175.00182 * 11 8 7 13 13 O 1.21277 * 120.00582 * 359.97438 * 12 11 8 14 14 N 1.34781 * 119.99793 * 179.72513 * 12 11 8 15 15 C 1.46499 * 119.99696 * 359.97438 * 14 12 11 16 16 C 1.46495 * 120.00082 * 179.97438 * 14 12 11 17 17 C 1.50706 * 109.47207 * 89.99890 * 16 14 12 18 18 H 1.07999 * 119.99994 * 359.97438 * 17 16 14 19 19 C 1.37877 * 119.99881 * 180.02562 * 17 16 14 20 20 N 1.31518 * 119.99839 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00006 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.47057 * 90.00282 * 21 19 17 23 23 H 1.48508 * 109.46834 * 209.99874 * 21 19 17 24 24 H 1.48491 * 109.47256 * 329.99894 * 21 19 17 25 25 H 1.09000 * 109.46930 * 264.60460 * 1 2 3 26 26 H 1.09005 * 109.46610 * 24.60306 * 1 2 3 27 27 H 1.08999 * 109.47429 * 144.60491 * 1 2 3 28 28 H 1.08006 * 119.99614 * 0.06349 * 3 2 1 29 29 H 1.07994 * 120.00513 * 179.83185 * 4 3 2 30 30 H 1.08004 * 120.00247 * 179.97438 * 5 4 3 31 31 H 1.08007 * 119.99956 * 179.97438 * 6 5 4 32 32 H 1.08995 * 109.46979 * 59.99681 * 10 8 7 33 33 H 1.08993 * 109.47578 * 180.02562 * 10 8 7 34 34 H 1.09004 * 109.46561 * 300.00102 * 10 8 7 35 35 H 1.09001 * 109.47039 * 54.99558 * 11 8 7 36 36 H 1.09003 * 109.46129 * 294.99790 * 11 8 7 37 37 H 1.09004 * 109.46859 * 90.00433 * 15 14 12 38 38 H 1.09004 * 109.47319 * 210.00014 * 15 14 12 39 39 H 1.08994 * 109.47502 * 330.00423 * 15 14 12 40 40 H 1.09005 * 109.47368 * 209.99481 * 16 14 12 41 41 H 1.08993 * 109.47517 * 329.99784 * 16 14 12 42 42 H 0.96995 * 119.99608 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 -0.0049 5 6 4.2717 -0.0002 -0.0058 6 6 3.5806 -1.1971 -0.0013 7 6 2.1980 -1.1971 0.0043 8 6 1.4445 -2.5020 0.0096 9 1 0.3778 -2.3052 0.1170 10 6 1.6967 -3.2420 -1.3056 11 6 1.9245 -3.3634 1.1796 12 6 1.0877 -4.6142 1.2589 13 8 0.1950 -4.7984 0.4588 14 7 1.3346 -5.5306 2.2159 15 6 2.4168 -5.3109 3.1786 16 6 0.5208 -6.7462 2.2934 17 6 1.1494 -7.8261 1.4509 18 1 2.0635 -7.6267 0.9113 19 6 0.5570 -9.0684 1.3681 20 7 1.1054 -10.0107 0.6324 21 14 -1.0243 -9.4131 2.3007 22 1 -2.1885 -9.0755 1.4430 23 1 -1.0797 -10.8513 2.6667 24 1 -1.0619 -8.5868 3.5339 25 1 -0.3633 -0.0966 1.0231 26 1 -0.3633 0.9344 -0.4279 27 1 -0.3634 -0.8377 -0.5952 28 1 1.6584 2.1327 0.0010 29 1 4.1205 2.1325 -0.0076 30 1 5.3517 -0.0003 -0.0100 31 1 4.1206 -2.1324 -0.0024 32 1 2.7634 -3.4388 -1.4130 33 1 1.1513 -4.1857 -1.3020 34 1 1.3548 -2.6283 -2.1390 35 1 1.8270 -2.8015 2.1084 36 1 2.9692 -3.6342 1.0266 37 1 2.0286 -4.7769 4.0460 38 1 2.8222 -6.2719 3.4952 39 1 3.2047 -4.7204 2.7111 40 1 0.4644 -7.0804 3.3294 41 1 -0.4830 -6.5357 1.9244 42 1 0.6884 -10.8845 0.5739 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116179852.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:46 Heat of formation + Delta-G solvation = -22.772791 kcal Electronic energy + Delta-G solvation = -21244.878191 eV Core-core repulsion = 18189.416920 eV Total energy + Delta-G solvation = -3055.461271 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.03972 -38.89010 -35.35925 -34.52166 -32.79117 -32.50765 -30.01707 -28.84564 -27.21399 -26.89364 -25.70627 -23.72942 -22.33572 -21.38330 -19.86944 -18.28219 -16.94971 -16.91042 -15.95351 -15.80601 -15.14823 -14.98323 -14.71217 -14.10109 -13.87525 -13.69899 -13.29496 -13.13764 -12.77515 -12.54647 -12.42841 -12.34145 -12.24311 -11.98097 -11.97265 -11.56807 -11.50491 -11.28450 -10.97267 -10.84702 -10.58988 -10.49883 -10.35705 -10.12448 -9.53431 -8.92507 -8.80663 -8.58283 -8.57332 -7.67052 -6.08079 -4.06667 1.31343 1.34483 3.29638 3.35630 3.37352 3.38382 3.68788 3.90522 4.40209 4.71637 4.73271 4.89218 4.94448 5.15235 5.19177 5.24563 5.26226 5.34008 5.47410 5.53557 5.57357 5.64592 5.71148 5.78259 5.84790 5.86518 5.96956 6.03954 6.12647 6.17898 6.23671 6.31505 6.45604 6.49115 6.69296 6.71563 6.77636 6.96170 6.98784 7.36707 7.62180 8.28083 8.48229 8.94150 9.02392 9.52461 11.05362 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032015 B = 0.003867 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.381216 B = 7239.952575 C = 7411.965848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.083 4.083 3 C -0.121 4.121 4 C -0.127 4.127 5 C -0.125 4.125 6 C -0.111 4.111 7 C -0.069 4.069 8 C -0.041 4.041 9 H 0.090 0.910 10 C -0.148 4.148 11 C -0.130 4.130 12 C 0.507 3.493 13 O -0.538 6.538 14 N -0.600 5.600 15 C 0.083 3.917 16 C 0.215 3.785 17 C -0.528 4.528 18 H 0.074 0.926 19 C 0.072 3.928 20 N -0.898 5.898 21 Si 0.877 3.123 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.266 1.266 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.048 0.952 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.028 0.972 41 H 0.036 0.964 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.241 21.264 2.063 21.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.083 4.083 3 C -0.139 4.139 4 C -0.145 4.145 5 C -0.144 4.144 6 C -0.129 4.129 7 C -0.069 4.069 8 C -0.060 4.060 9 H 0.109 0.891 10 C -0.205 4.205 11 C -0.171 4.171 12 C 0.294 3.706 13 O -0.416 6.416 14 N -0.331 5.331 15 C -0.061 4.061 16 C 0.094 3.906 17 C -0.566 4.566 18 H 0.092 0.908 19 C -0.131 4.131 20 N -0.537 5.537 21 Si 0.704 3.296 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.191 1.191 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.063 0.937 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.738 20.945 1.599 21.336 hybrid contribution -0.488 -0.333 0.513 0.782 sum 3.251 20.613 2.113 20.974 Atomic orbital electron populations 1.20871 0.91337 1.02785 1.02626 1.19813 0.96068 0.92564 0.99840 1.20991 0.94260 0.97253 1.01446 1.21067 0.94295 0.97896 1.01214 1.21101 0.99686 0.92554 1.01013 1.21045 0.93749 0.98139 0.99989 1.19862 0.93676 0.94465 0.98909 1.19982 1.00133 0.90448 0.95389 0.89142 1.21948 1.01576 1.01939 0.95047 1.21756 1.00590 0.94981 0.99729 1.20349 0.84858 0.84408 0.80984 1.90623 1.33084 1.78278 1.39634 1.47858 1.33764 1.21239 1.30285 1.21657 0.89989 1.02310 0.92111 1.19649 0.91853 0.82066 0.97000 1.21336 1.11294 0.94976 1.29011 0.90802 1.24866 0.97181 0.95975 0.95045 1.69901 1.39995 1.04085 1.39681 0.86841 0.84436 0.77554 0.80796 1.19907 1.21097 1.19102 0.91108 0.91838 0.90697 0.86395 0.86476 0.86337 0.86001 0.93316 0.89497 0.93257 0.89668 0.89328 0.93732 0.90639 0.92131 0.95370 0.94573 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 9.14 36.01 0.33 -0.88 16 2 C -0.08 -0.95 5.88 -104.62 -0.62 -1.57 16 3 C -0.12 -1.24 9.68 -39.59 -0.38 -1.62 16 4 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 5 C -0.13 -1.28 10.05 -39.58 -0.40 -1.67 16 6 C -0.11 -1.28 8.79 -39.59 -0.35 -1.62 16 7 C -0.07 -0.86 4.78 -104.63 -0.50 -1.36 16 8 C -0.04 -0.58 1.93 -91.77 -0.18 -0.75 16 9 H 0.09 1.34 5.54 -51.93 -0.29 1.05 16 10 C -0.15 -2.26 8.80 37.16 0.33 -1.94 16 11 C -0.13 -1.90 3.39 -27.88 -0.09 -2.00 16 12 C 0.51 10.11 7.39 -10.99 -0.08 10.03 16 13 O -0.54 -12.74 13.55 5.56 0.08 -12.67 16 14 N -0.60 -12.32 2.86 -182.96 -0.52 -12.85 16 15 C 0.08 1.28 10.25 59.85 0.61 1.89 16 16 C 0.22 5.28 4.23 -5.19 -0.02 5.26 16 17 C -0.53 -15.21 9.94 -34.44 -0.34 -15.55 16 18 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 19 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 20 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 21 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 22 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.53 8.05 -51.93 -0.42 0.11 16 27 H 0.07 0.82 6.54 -51.93 -0.34 0.48 16 28 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 29 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 30 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 31 H 0.12 1.30 7.18 -52.48 -0.38 0.93 16 32 H 0.05 0.69 7.75 -51.93 -0.40 0.29 16 33 H 0.09 1.63 5.95 -51.93 -0.31 1.32 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.08 8.11 -51.93 -0.42 0.66 16 36 H 0.09 1.18 6.53 -51.93 -0.34 0.84 16 37 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 39 H 0.06 0.77 6.43 -51.93 -0.33 0.44 16 40 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 41 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 42 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 337.47 15.07 5.09 5.09 Total: -1.00 -33.43 337.47 -7.95 -41.38 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -6.50 Total: 0.49 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -2.19 Total: -11.42 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.25 Total: -39.86 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.08 Total: -12.67 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.43 -7.95 -41.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116179852.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.606 kcal (2) G-P(sol) polarization free energy of solvation -33.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds