Wall clock time and date at job start Mon Mar 30 2020 02:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38259 * 120.00497 * 2 1 4 4 C 1.38206 * 120.00324 * 180.23328 * 3 2 1 5 5 C 1.38261 * 119.99727 * 359.81033 * 4 3 2 6 6 C 1.38210 * 120.00087 * 359.97438 * 5 4 3 7 7 C 1.38219 * 119.99636 * 179.79421 * 2 1 3 8 8 C 1.50693 * 120.00090 * 359.97438 * 7 2 1 9 9 H 1.09003 * 109.47100 * 353.98038 * 8 7 2 10 10 C 1.52999 * 109.47577 * 113.98540 * 8 7 2 11 11 C 1.53012 * 109.47163 * 233.98692 * 8 7 2 12 12 C 1.50693 * 109.46952 * 175.00182 * 11 8 7 13 13 O 1.21277 * 120.00582 * 359.97438 * 12 11 8 14 14 N 1.34781 * 119.99793 * 179.72513 * 12 11 8 15 15 C 1.46499 * 119.99696 * 359.97438 * 14 12 11 16 16 C 1.46495 * 120.00082 * 179.97438 * 14 12 11 17 17 C 1.50706 * 109.47207 * 89.99890 * 16 14 12 18 18 H 1.07999 * 119.99994 * 359.97438 * 17 16 14 19 19 C 1.37877 * 119.99881 * 180.02562 * 17 16 14 20 20 N 1.31518 * 119.99839 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00006 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.47057 * 90.00282 * 21 19 17 23 23 H 1.48508 * 109.46834 * 209.99874 * 21 19 17 24 24 H 1.48491 * 109.47256 * 329.99894 * 21 19 17 25 25 H 1.09000 * 109.46930 * 264.60460 * 1 2 3 26 26 H 1.09005 * 109.46610 * 24.60306 * 1 2 3 27 27 H 1.08999 * 109.47429 * 144.60491 * 1 2 3 28 28 H 1.08006 * 119.99614 * 0.06349 * 3 2 1 29 29 H 1.07994 * 120.00513 * 179.83185 * 4 3 2 30 30 H 1.08004 * 120.00247 * 179.97438 * 5 4 3 31 31 H 1.08007 * 119.99956 * 179.97438 * 6 5 4 32 32 H 1.08995 * 109.46979 * 59.99681 * 10 8 7 33 33 H 1.08993 * 109.47578 * 180.02562 * 10 8 7 34 34 H 1.09004 * 109.46561 * 300.00102 * 10 8 7 35 35 H 1.09001 * 109.47039 * 54.99558 * 11 8 7 36 36 H 1.09003 * 109.46129 * 294.99790 * 11 8 7 37 37 H 1.09004 * 109.46859 * 90.00433 * 15 14 12 38 38 H 1.09004 * 109.47319 * 210.00014 * 15 14 12 39 39 H 1.08994 * 109.47502 * 330.00423 * 15 14 12 40 40 H 1.09005 * 109.47368 * 209.99481 * 16 14 12 41 41 H 1.08993 * 109.47517 * 329.99784 * 16 14 12 42 42 H 0.96995 * 119.99608 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 -0.0049 5 6 4.2717 -0.0002 -0.0058 6 6 3.5806 -1.1971 -0.0013 7 6 2.1980 -1.1971 0.0043 8 6 1.4445 -2.5020 0.0096 9 1 0.3778 -2.3052 0.1170 10 6 1.6967 -3.2420 -1.3056 11 6 1.9245 -3.3634 1.1796 12 6 1.0877 -4.6142 1.2589 13 8 0.1950 -4.7984 0.4588 14 7 1.3346 -5.5306 2.2159 15 6 2.4168 -5.3109 3.1786 16 6 0.5208 -6.7462 2.2934 17 6 1.1494 -7.8261 1.4509 18 1 2.0635 -7.6267 0.9113 19 6 0.5570 -9.0684 1.3681 20 7 1.1054 -10.0107 0.6324 21 14 -1.0243 -9.4131 2.3007 22 1 -2.1885 -9.0755 1.4430 23 1 -1.0797 -10.8513 2.6667 24 1 -1.0619 -8.5868 3.5339 25 1 -0.3633 -0.0966 1.0231 26 1 -0.3633 0.9344 -0.4279 27 1 -0.3634 -0.8377 -0.5952 28 1 1.6584 2.1327 0.0010 29 1 4.1205 2.1325 -0.0076 30 1 5.3517 -0.0003 -0.0100 31 1 4.1206 -2.1324 -0.0024 32 1 2.7634 -3.4388 -1.4130 33 1 1.1513 -4.1857 -1.3020 34 1 1.3548 -2.6283 -2.1390 35 1 1.8270 -2.8015 2.1084 36 1 2.9692 -3.6342 1.0266 37 1 2.0286 -4.7769 4.0460 38 1 2.8222 -6.2719 3.4952 39 1 3.2047 -4.7204 2.7111 40 1 0.4644 -7.0804 3.3294 41 1 -0.4830 -6.5357 1.9244 42 1 0.6884 -10.8845 0.5739 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116179852.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:45 Heat of formation + Delta-G solvation = -42.399782 kcal Electronic energy + Delta-G solvation = -21245.729281 eV Core-core repulsion = 18189.416920 eV Total energy + Delta-G solvation = -3056.312361 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.17467 -40.16173 -36.83082 -35.84039 -34.68846 -33.57068 -31.27009 -30.34477 -28.61403 -27.68446 -27.21767 -24.95470 -23.94296 -22.31921 -20.93278 -19.76618 -19.14361 -18.12860 -17.21344 -16.95362 -16.71511 -16.21226 -15.87314 -15.62369 -14.91479 -14.90338 -14.58628 -14.43664 -13.97201 -13.89910 -13.77470 -13.62715 -13.50298 -13.22274 -13.19235 -12.91407 -12.81188 -12.55859 -12.46002 -12.15241 -12.07676 -12.01322 -11.74857 -11.55630 -11.39210 -10.83442 -10.51161 -9.62914 -9.40797 -9.35560 -8.34315 -6.39240 0.50242 0.55425 1.32268 1.36362 1.44875 1.83959 2.30660 2.37732 2.90977 3.00130 3.61367 3.79250 4.04534 4.08141 4.13896 4.19110 4.32502 4.38000 4.50527 4.52372 4.62473 4.66611 4.67747 4.80058 4.81170 4.85928 4.88088 4.92935 4.97817 4.99188 5.06087 5.19616 5.28964 5.36178 5.40194 5.46664 5.64878 5.67547 5.70069 5.85604 6.20303 6.24417 6.62031 6.73370 7.21878 7.46732 8.82729 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032015 B = 0.003867 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.381216 B = 7239.952575 C = 7411.965848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.095 4.095 3 C -0.126 4.126 4 C -0.126 4.126 5 C -0.129 4.129 6 C -0.121 4.121 7 C -0.083 4.083 8 C -0.034 4.034 9 H 0.078 0.922 10 C -0.143 4.143 11 C -0.116 4.116 12 C 0.496 3.504 13 O -0.586 6.586 14 N -0.611 5.611 15 C 0.077 3.923 16 C 0.223 3.777 17 C -0.535 4.535 18 H 0.028 0.972 19 C 0.010 3.990 20 N -0.946 5.946 21 Si 0.949 3.051 22 H -0.276 1.276 23 H -0.275 1.275 24 H -0.238 1.238 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.139 0.861 29 H 0.143 0.857 30 H 0.140 0.860 31 H 0.125 0.875 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.048 0.952 41 H 0.018 0.982 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.650 23.896 3.930 24.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.095 4.095 3 C -0.144 4.144 4 C -0.143 4.143 5 C -0.147 4.147 6 C -0.139 4.139 7 C -0.084 4.084 8 C -0.053 4.053 9 H 0.097 0.903 10 C -0.200 4.200 11 C -0.155 4.155 12 C 0.286 3.714 13 O -0.467 6.467 14 N -0.342 5.342 15 C -0.065 4.065 16 C 0.101 3.899 17 C -0.574 4.574 18 H 0.046 0.954 19 C -0.188 4.188 20 N -0.586 5.586 21 Si 0.772 3.228 22 H -0.202 1.202 23 H -0.200 1.200 24 H -0.161 1.161 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.077 0.923 28 H 0.157 0.843 29 H 0.161 0.839 30 H 0.157 0.843 31 H 0.143 0.857 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.107 0.893 40 H 0.066 0.934 41 H 0.037 0.963 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.187 23.609 3.498 24.232 hybrid contribution -0.511 -1.090 -0.154 1.214 sum 3.677 22.519 3.344 23.061 Atomic orbital electron populations 1.20871 0.90933 1.03065 1.02673 1.20006 0.96619 0.92835 1.00041 1.21280 0.94784 0.97541 1.00751 1.21438 0.94310 0.98871 0.99719 1.21389 1.00873 0.92192 1.00271 1.21169 0.93402 0.99045 1.00315 1.19677 0.94049 0.93581 1.01047 1.19837 0.99878 0.91349 0.94197 0.90349 1.21855 1.01336 1.00223 0.96634 1.21737 1.00048 0.92398 1.01343 1.21339 0.84688 0.85632 0.79790 1.90601 1.35299 1.79517 1.41241 1.47998 1.34610 1.19982 1.31598 1.21957 0.89415 1.02765 0.92389 1.19314 0.91281 0.82610 0.96729 1.21573 1.09968 0.96677 1.29173 0.95402 1.25870 1.01203 0.95632 0.96105 1.70054 1.42126 1.04807 1.41632 0.85698 0.78783 0.78200 0.80155 1.20207 1.19988 1.16132 0.90824 0.90074 0.92257 0.84316 0.83917 0.84264 0.85708 0.92542 0.93646 0.92500 0.86851 0.87668 0.90338 0.91667 0.89347 0.93375 0.96348 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 9.14 71.24 0.65 -1.62 16 2 C -0.09 -2.00 5.88 -19.86 -0.12 -2.12 16 3 C -0.13 -2.19 9.68 22.27 0.22 -1.97 16 4 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 5 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 6 C -0.12 -2.52 8.79 22.27 0.20 -2.32 16 7 C -0.08 -1.94 4.78 -19.87 -0.10 -2.04 16 8 C -0.03 -0.95 1.93 -11.54 -0.02 -0.97 16 9 H 0.08 2.38 5.54 -2.39 -0.01 2.36 16 10 C -0.14 -4.53 8.80 71.98 0.63 -3.90 16 11 C -0.12 -3.24 3.39 29.85 0.10 -3.13 16 12 C 0.50 19.95 7.39 87.65 0.65 20.60 16 13 O -0.59 -28.92 13.55 -3.02 -0.04 -28.96 16 14 N -0.61 -24.88 2.86 -851.14 -2.43 -27.31 16 15 C 0.08 2.20 10.25 127.77 1.31 3.51 16 16 C 0.22 11.00 4.23 85.64 0.36 11.36 16 17 C -0.54 -31.90 9.94 25.60 0.25 -31.65 16 18 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 19 C 0.01 0.58 5.47 84.65 0.46 1.04 16 20 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 21 Si 0.95 44.92 27.47 68.60 1.88 46.81 16 22 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 23 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.24 -10.11 6.54 99.48 0.65 -9.46 16 25 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.08 1.21 8.05 -2.38 -0.02 1.19 16 27 H 0.06 1.30 6.54 -2.39 -0.02 1.29 16 28 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 29 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 30 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 31 H 0.12 2.42 7.18 -2.91 -0.02 2.40 16 32 H 0.06 1.63 7.75 -2.39 -0.02 1.61 16 33 H 0.04 1.82 5.95 -2.39 -0.01 1.80 16 34 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.11 2.56 8.11 -2.39 -0.02 2.54 16 36 H 0.11 2.61 6.53 -2.39 -0.02 2.59 16 37 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 38 H 0.06 2.00 8.07 -2.38 -0.02 1.98 16 39 H 0.09 2.01 6.43 -2.39 -0.02 2.00 16 40 H 0.05 2.18 7.13 -2.38 -0.02 2.16 16 41 H 0.02 0.97 6.85 -2.39 -0.02 0.96 16 42 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -76.46 337.47 5.70 -70.77 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.94 Total: 15.83 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 5.05 Total: -17.00 kcal Atomic # 7 Polarization: -85.31 SS G_CDS: -2.13 Total: -87.44 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.04 Total: -28.96 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.88 Total: 46.81 kcal Total: -76.46 5.70 -70.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116179852.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.370 kcal (2) G-P(sol) polarization free energy of solvation -76.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds