Wall clock time and date at job start Mon Mar 30 2020 02:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38255 * 120.00144 * 2 1 4 4 C 1.38221 * 120.00136 * 180.25398 * 3 2 1 5 5 C 1.38261 * 119.99497 * 359.54072 * 4 3 2 6 6 C 1.38209 * 120.00368 * 0.39928 * 5 4 3 7 7 C 1.38218 * 120.00145 * 179.97438 * 2 1 3 8 8 C 1.50704 * 119.99584 * 359.97438 * 7 2 1 9 9 H 1.09003 * 109.47080 * 5.77775 * 8 7 2 10 10 C 1.53005 * 109.46791 * 245.78159 * 8 7 2 11 11 C 1.52999 * 109.47053 * 125.78341 * 8 7 2 12 12 C 1.50706 * 109.46904 * 184.99804 * 11 8 7 13 13 O 1.21287 * 119.99707 * 359.97438 * 12 11 8 14 14 N 1.34765 * 119.99937 * 179.97438 * 12 11 8 15 15 C 1.46504 * 120.00198 * 359.97438 * 14 12 11 16 16 C 1.46504 * 120.00044 * 179.97438 * 14 12 11 17 17 C 1.50700 * 109.46894 * 90.00322 * 16 14 12 18 18 H 1.08000 * 120.00174 * 359.97438 * 17 16 14 19 19 C 1.37882 * 120.00142 * 180.02562 * 17 16 14 20 20 N 1.31514 * 119.99514 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00198 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46965 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46936 * 119.99664 * 21 19 17 24 24 H 1.48503 * 109.46970 * 240.00120 * 21 19 17 25 25 H 1.08999 * 109.47323 * 95.59593 * 1 2 3 26 26 H 1.08995 * 109.47282 * 215.60321 * 1 2 3 27 27 H 1.08999 * 109.47058 * 335.59819 * 1 2 3 28 28 H 1.07995 * 120.00173 * 359.97438 * 3 2 1 29 29 H 1.07992 * 120.00273 * 179.72210 * 4 3 2 30 30 H 1.07997 * 119.99482 * 180.22520 * 5 4 3 31 31 H 1.07998 * 120.00161 * 179.83303 * 6 5 4 32 32 H 1.08993 * 109.46984 * 179.97438 * 10 8 7 33 33 H 1.08997 * 109.46748 * 300.00023 * 10 8 7 34 34 H 1.09000 * 109.47042 * 59.99922 * 10 8 7 35 35 H 1.08998 * 109.46993 * 304.99051 * 11 8 7 36 36 H 1.08996 * 109.47270 * 64.99674 * 11 8 7 37 37 H 1.09003 * 109.47174 * 89.99855 * 15 14 12 38 38 H 1.08997 * 109.47511 * 209.99491 * 15 14 12 39 39 H 1.08996 * 109.46839 * 330.00298 * 15 14 12 40 40 H 1.08998 * 109.47356 * 210.00022 * 16 14 12 41 41 H 1.08999 * 109.46966 * 330.00073 * 16 14 12 42 42 H 0.96997 * 119.99864 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0053 5 6 4.2717 -0.0001 -0.0010 6 6 3.5806 -1.1970 0.0002 7 6 2.1981 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0017 9 1 0.3773 -2.3055 -0.1015 10 6 1.7025 -3.2387 1.3177 11 6 1.9194 -3.3663 -1.1681 12 6 1.0823 -4.6173 -1.2407 13 8 0.1936 -4.7999 -0.4358 14 7 1.3211 -5.5331 -2.2001 15 6 2.3942 -5.3123 -3.1728 16 6 0.5077 -6.7496 -2.2704 17 6 -0.6874 -6.5042 -3.1551 18 1 -0.8273 -5.5387 -3.6182 19 6 -1.6029 -7.5121 -3.3723 20 7 -1.4327 -8.6878 -2.8079 21 14 -3.0846 -7.2078 -4.4683 22 1 -3.0454 -5.8135 -4.9777 23 1 -3.0569 -8.1543 -5.6123 24 1 -4.3298 -7.4135 -3.6856 25 1 -0.3634 -0.1002 -1.0227 26 1 -0.3633 -0.8355 0.5982 27 1 -0.3633 0.9359 0.4246 28 1 1.6583 2.1326 -0.0004 29 1 4.1204 2.1325 -0.0098 30 1 5.3516 -0.0001 -0.0015 31 1 4.1206 -2.1323 0.0009 32 1 1.1571 -4.1824 1.3188 33 1 2.7696 -3.4352 1.4209 34 1 1.3641 -2.6230 2.1511 35 1 1.8178 -2.8067 -2.0979 36 1 2.9648 -3.6367 -1.0191 37 1 3.3231 -5.7367 -2.7917 38 1 2.1349 -5.7939 -4.1156 39 1 2.5232 -4.2422 -3.3347 40 1 1.1047 -7.5626 -2.6836 41 1 0.1699 -7.0191 -1.2698 42 1 -2.0765 -9.3969 -2.9610 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116179855.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:49 Heat of formation + Delta-G solvation = -27.398158 kcal Electronic energy + Delta-G solvation = -21215.675009 eV Core-core repulsion = 18160.013167 eV Total energy + Delta-G solvation = -3055.661842 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.00250 -38.79136 -35.27740 -34.43968 -32.77308 -32.56063 -29.92783 -28.43970 -27.02758 -26.86066 -25.55239 -23.74585 -22.61158 -21.41448 -19.88216 -18.22485 -16.85203 -16.52916 -15.89338 -15.73263 -15.12680 -14.88397 -14.65906 -14.21125 -13.93371 -13.54422 -13.28056 -13.11587 -12.74312 -12.51047 -12.36495 -12.21377 -12.12749 -11.95046 -11.82765 -11.45758 -11.27903 -11.20693 -10.95002 -10.83867 -10.61869 -10.50269 -10.34839 -10.14328 -9.58015 -8.86133 -8.75206 -8.54914 -8.42842 -7.59642 -6.03367 -4.07933 1.33076 1.35729 3.30110 3.37338 3.40892 3.49608 3.71002 4.02264 4.45528 4.75128 4.75730 4.91337 4.96092 5.15863 5.24977 5.29689 5.31299 5.38664 5.49158 5.58162 5.61745 5.68512 5.76723 5.81384 5.82489 5.92674 5.99735 6.05499 6.15874 6.21851 6.25573 6.32408 6.46036 6.50157 6.66057 6.76341 6.99950 7.08752 7.46652 7.57784 7.93537 8.25230 8.46434 8.92440 9.14652 9.57317 11.04714 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026021 B = 0.003970 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.798712 B = 7050.748409 C = 7400.867609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.081 4.081 3 C -0.121 4.121 4 C -0.127 4.127 5 C -0.127 4.127 6 C -0.112 4.112 7 C -0.069 4.069 8 C -0.042 4.042 9 H 0.092 0.908 10 C -0.146 4.146 11 C -0.131 4.131 12 C 0.504 3.496 13 O -0.540 6.540 14 N -0.604 5.604 15 C 0.084 3.916 16 C 0.245 3.755 17 C -0.524 4.524 18 H 0.057 0.943 19 C 0.060 3.940 20 N -0.895 5.895 21 Si 0.898 3.102 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.283 1.283 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.031 0.969 41 H 0.044 0.956 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.265 17.037 4.207 20.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.081 4.081 3 C -0.139 4.139 4 C -0.145 4.145 5 C -0.145 4.145 6 C -0.130 4.130 7 C -0.069 4.069 8 C -0.061 4.061 9 H 0.110 0.890 10 C -0.203 4.203 11 C -0.171 4.171 12 C 0.291 3.709 13 O -0.418 6.418 14 N -0.336 5.336 15 C -0.061 4.061 16 C 0.125 3.875 17 C -0.563 4.563 18 H 0.075 0.925 19 C -0.142 4.142 20 N -0.534 5.534 21 Si 0.725 3.275 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.209 1.209 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.049 0.951 41 H 0.062 0.938 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.710 16.726 4.632 20.394 hybrid contribution -0.635 0.136 -0.820 1.046 sum 10.075 16.862 3.812 20.009 Atomic orbital electron populations 1.20882 0.91257 1.02769 1.02828 1.19830 0.96132 0.92562 0.99592 1.21002 0.94256 0.97289 1.01389 1.21066 0.94294 0.97885 1.01235 1.21084 0.99618 0.92578 1.01179 1.21014 0.93723 0.98045 1.00190 1.19873 0.93655 0.94523 0.98862 1.19988 1.00386 0.90443 0.95259 0.88978 1.21931 1.01188 1.01919 0.95268 1.21760 1.00275 0.95361 0.99715 1.20315 0.84589 0.84515 0.81473 1.90624 1.32721 1.77668 1.40767 1.48172 1.33930 1.22679 1.28835 1.21630 0.89951 1.00662 0.93833 1.19276 0.89433 0.80172 0.98593 1.21482 1.07670 0.98248 1.28940 0.92463 1.24943 0.98045 0.95008 0.96176 1.69944 1.36600 1.03032 1.43857 0.86449 0.82681 0.78175 0.80164 1.19824 1.20972 1.20867 0.90947 0.90663 0.91837 0.86374 0.86491 0.86396 0.86100 0.89737 0.93487 0.93246 0.89599 0.89727 0.93837 0.90867 0.92454 0.95142 0.93833 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 9.15 36.00 0.33 -0.99 16 2 C -0.08 -0.97 5.88 -104.63 -0.62 -1.59 16 3 C -0.12 -1.28 9.68 -39.58 -0.38 -1.67 16 4 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 5 C -0.13 -1.28 10.05 -39.58 -0.40 -1.68 16 6 C -0.11 -1.27 8.79 -39.59 -0.35 -1.62 16 7 C -0.07 -0.87 4.78 -104.62 -0.50 -1.37 16 8 C -0.04 -0.60 1.94 -91.77 -0.18 -0.78 16 9 H 0.09 1.45 5.53 -51.93 -0.29 1.17 16 10 C -0.15 -2.11 8.80 37.16 0.33 -1.79 16 11 C -0.13 -1.96 3.39 -27.88 -0.09 -2.05 16 12 C 0.50 10.34 7.39 -10.99 -0.08 10.26 16 13 O -0.54 -13.13 13.54 5.55 0.08 -13.06 16 14 N -0.60 -12.87 2.86 -182.95 -0.52 -13.39 16 15 C 0.08 1.33 10.24 59.85 0.61 1.95 16 16 C 0.24 6.45 5.16 -5.19 -0.03 6.42 16 17 C -0.52 -15.00 9.39 -34.44 -0.32 -15.32 16 18 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.90 -26.76 13.29 55.43 0.74 -26.03 16 21 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.88 6.54 -51.93 -0.34 0.54 16 27 H 0.06 0.58 8.05 -51.93 -0.42 0.16 16 28 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 31 H 0.12 1.23 7.18 -52.49 -0.38 0.86 16 32 H 0.08 1.48 5.95 -51.93 -0.31 1.17 16 33 H 0.05 0.60 7.75 -51.93 -0.40 0.20 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 1.20 7.40 -51.93 -0.38 0.82 16 36 H 0.08 1.08 7.25 -51.93 -0.38 0.71 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 39 H 0.06 0.76 6.44 -51.93 -0.33 0.42 16 40 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 41 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 341.06 15.07 5.14 5.14 Total: -1.00 -32.66 341.06 -8.30 -40.96 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -6.53 Total: -0.33 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -2.17 Total: -10.25 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.21 Total: -39.42 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.08 Total: -13.06 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.66 -8.30 -40.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116179855.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.558 kcal (2) G-P(sol) polarization free energy of solvation -32.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds