Wall clock time and date at job start Mon Mar 30 2020 02:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38255 * 120.00144 * 2 1 4 4 C 1.38221 * 120.00136 * 180.25398 * 3 2 1 5 5 C 1.38261 * 119.99497 * 359.54072 * 4 3 2 6 6 C 1.38209 * 120.00368 * 0.39928 * 5 4 3 7 7 C 1.38218 * 120.00145 * 179.97438 * 2 1 3 8 8 C 1.50704 * 119.99584 * 359.97438 * 7 2 1 9 9 H 1.09003 * 109.47080 * 5.77775 * 8 7 2 10 10 C 1.53005 * 109.46791 * 245.78159 * 8 7 2 11 11 C 1.52999 * 109.47053 * 125.78341 * 8 7 2 12 12 C 1.50706 * 109.46904 * 184.99804 * 11 8 7 13 13 O 1.21287 * 119.99707 * 359.97438 * 12 11 8 14 14 N 1.34765 * 119.99937 * 179.97438 * 12 11 8 15 15 C 1.46504 * 120.00198 * 359.97438 * 14 12 11 16 16 C 1.46504 * 120.00044 * 179.97438 * 14 12 11 17 17 C 1.50700 * 109.46894 * 90.00322 * 16 14 12 18 18 H 1.08000 * 120.00174 * 359.97438 * 17 16 14 19 19 C 1.37882 * 120.00142 * 180.02562 * 17 16 14 20 20 N 1.31514 * 119.99514 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00198 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46965 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46936 * 119.99664 * 21 19 17 24 24 H 1.48503 * 109.46970 * 240.00120 * 21 19 17 25 25 H 1.08999 * 109.47323 * 95.59593 * 1 2 3 26 26 H 1.08995 * 109.47282 * 215.60321 * 1 2 3 27 27 H 1.08999 * 109.47058 * 335.59819 * 1 2 3 28 28 H 1.07995 * 120.00173 * 359.97438 * 3 2 1 29 29 H 1.07992 * 120.00273 * 179.72210 * 4 3 2 30 30 H 1.07997 * 119.99482 * 180.22520 * 5 4 3 31 31 H 1.07998 * 120.00161 * 179.83303 * 6 5 4 32 32 H 1.08993 * 109.46984 * 179.97438 * 10 8 7 33 33 H 1.08997 * 109.46748 * 300.00023 * 10 8 7 34 34 H 1.09000 * 109.47042 * 59.99922 * 10 8 7 35 35 H 1.08998 * 109.46993 * 304.99051 * 11 8 7 36 36 H 1.08996 * 109.47270 * 64.99674 * 11 8 7 37 37 H 1.09003 * 109.47174 * 89.99855 * 15 14 12 38 38 H 1.08997 * 109.47511 * 209.99491 * 15 14 12 39 39 H 1.08996 * 109.46839 * 330.00298 * 15 14 12 40 40 H 1.08998 * 109.47356 * 210.00022 * 16 14 12 41 41 H 1.08999 * 109.46966 * 330.00073 * 16 14 12 42 42 H 0.96997 * 119.99864 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0053 5 6 4.2717 -0.0001 -0.0010 6 6 3.5806 -1.1970 0.0002 7 6 2.1981 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0017 9 1 0.3773 -2.3055 -0.1015 10 6 1.7025 -3.2387 1.3177 11 6 1.9194 -3.3663 -1.1681 12 6 1.0823 -4.6173 -1.2407 13 8 0.1936 -4.7999 -0.4358 14 7 1.3211 -5.5331 -2.2001 15 6 2.3942 -5.3123 -3.1728 16 6 0.5077 -6.7496 -2.2704 17 6 -0.6874 -6.5042 -3.1551 18 1 -0.8273 -5.5387 -3.6182 19 6 -1.6029 -7.5121 -3.3723 20 7 -1.4327 -8.6878 -2.8079 21 14 -3.0846 -7.2078 -4.4683 22 1 -3.0454 -5.8135 -4.9777 23 1 -3.0569 -8.1543 -5.6123 24 1 -4.3298 -7.4135 -3.6856 25 1 -0.3634 -0.1002 -1.0227 26 1 -0.3633 -0.8355 0.5982 27 1 -0.3633 0.9359 0.4246 28 1 1.6583 2.1326 -0.0004 29 1 4.1204 2.1325 -0.0098 30 1 5.3516 -0.0001 -0.0015 31 1 4.1206 -2.1323 0.0009 32 1 1.1571 -4.1824 1.3188 33 1 2.7696 -3.4352 1.4209 34 1 1.3641 -2.6230 2.1511 35 1 1.8178 -2.8067 -2.0979 36 1 2.9648 -3.6367 -1.0191 37 1 3.3231 -5.7367 -2.7917 38 1 2.1349 -5.7939 -4.1156 39 1 2.5232 -4.2422 -3.3347 40 1 1.1047 -7.5626 -2.6836 41 1 0.1699 -7.0191 -1.2698 42 1 -2.0765 -9.3969 -2.9610 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116179855.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:48 Heat of formation + Delta-G solvation = -45.530229 kcal Electronic energy + Delta-G solvation = -21216.461275 eV Core-core repulsion = 18160.013167 eV Total energy + Delta-G solvation = -3056.448107 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.14102 -40.12810 -36.78355 -35.81261 -34.71578 -33.57023 -31.02496 -30.03931 -28.50198 -27.69388 -27.17035 -25.11594 -24.14707 -22.33826 -20.93962 -19.75567 -18.69693 -18.07444 -17.18681 -16.93502 -16.64287 -16.35596 -15.90241 -15.57302 -14.93141 -14.74360 -14.63581 -14.15132 -13.98061 -13.88464 -13.76664 -13.44615 -13.42572 -13.18349 -13.13659 -12.90078 -12.77361 -12.63790 -12.56722 -12.19808 -12.13757 -12.03143 -11.68298 -11.53436 -11.38723 -10.65530 -10.45748 -9.61997 -9.40525 -9.37337 -8.22875 -6.37886 0.50948 0.56188 1.35419 1.37856 1.49737 1.88912 2.33090 2.48544 2.91931 3.06326 3.63994 3.79802 4.06179 4.08594 4.16504 4.20562 4.32551 4.41440 4.50092 4.54159 4.63122 4.68712 4.72618 4.78183 4.86145 4.87764 4.94880 4.96827 5.01003 5.08961 5.21022 5.24049 5.31212 5.35492 5.42123 5.57786 5.68150 5.70357 5.86044 5.86744 6.06536 6.21038 6.70250 6.82783 7.28616 7.53529 8.84202 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026021 B = 0.003970 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.798712 B = 7050.748409 C = 7400.867609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.098 4.098 3 C -0.127 4.127 4 C -0.126 4.126 5 C -0.128 4.128 6 C -0.118 4.118 7 C -0.084 4.084 8 C -0.037 4.037 9 H 0.069 0.931 10 C -0.140 4.140 11 C -0.114 4.114 12 C 0.494 3.506 13 O -0.589 6.589 14 N -0.614 5.614 15 C 0.078 3.922 16 C 0.259 3.741 17 C -0.542 4.542 18 H 0.052 0.948 19 C 0.007 3.993 20 N -0.929 5.929 21 Si 0.968 3.032 22 H -0.267 1.267 23 H -0.268 1.268 24 H -0.281 1.281 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.136 0.864 29 H 0.143 0.857 30 H 0.143 0.857 31 H 0.132 0.868 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.021 0.979 41 H -0.002 1.002 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.957 19.513 3.127 23.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.098 4.098 3 C -0.145 4.145 4 C -0.144 4.144 5 C -0.146 4.146 6 C -0.136 4.136 7 C -0.084 4.084 8 C -0.056 4.056 9 H 0.087 0.913 10 C -0.197 4.197 11 C -0.154 4.154 12 C 0.284 3.716 13 O -0.470 6.470 14 N -0.345 5.345 15 C -0.064 4.064 16 C 0.138 3.862 17 C -0.580 4.580 18 H 0.070 0.930 19 C -0.192 4.192 20 N -0.569 5.569 21 Si 0.792 3.208 22 H -0.192 1.192 23 H -0.193 1.193 24 H -0.207 1.207 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.154 0.846 29 H 0.161 0.839 30 H 0.160 0.840 31 H 0.150 0.850 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.121 0.879 36 H 0.133 0.867 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.110 0.890 40 H 0.039 0.961 41 H 0.016 0.984 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.444 19.222 3.531 23.169 hybrid contribution -1.106 -0.606 -0.430 1.332 sum 11.338 18.616 3.101 22.016 Atomic orbital electron populations 1.20862 0.91366 1.03014 1.02391 1.19989 0.96373 0.93111 1.00286 1.21265 0.94931 0.97409 1.00891 1.21443 0.94144 0.99052 0.99769 1.21410 1.00957 0.92103 1.00109 1.21185 0.93088 0.99250 1.00106 1.19699 0.94261 0.93447 1.00969 1.19845 0.99503 0.91536 0.94679 0.91288 1.21838 1.01725 1.00202 0.95985 1.21728 1.00490 0.92297 1.00856 1.21351 0.84460 0.85619 0.80219 1.90604 1.35059 1.78839 1.42508 1.48216 1.34617 1.21297 1.30376 1.21918 0.89089 1.03143 0.92243 1.18731 0.89702 0.82388 0.95424 1.21742 1.08841 0.98105 1.29353 0.92988 1.25873 1.01105 0.94678 0.97572 1.70059 1.37835 1.03940 1.45038 0.85360 0.78435 0.78535 0.78430 1.19164 1.19329 1.20715 0.91383 0.92319 0.90061 0.84581 0.83927 0.83951 0.85015 0.93402 0.91658 0.92708 0.87898 0.86672 0.91076 0.91717 0.89007 0.96060 0.98405 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.59 9.15 71.23 0.65 -1.94 16 2 C -0.10 -2.19 5.88 -19.87 -0.12 -2.30 16 3 C -0.13 -2.34 9.68 22.27 0.22 -2.12 16 4 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 5 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 6 C -0.12 -2.33 8.79 22.27 0.20 -2.14 16 7 C -0.08 -1.97 4.78 -19.86 -0.10 -2.07 16 8 C -0.04 -1.05 1.94 -11.54 -0.02 -1.07 16 9 H 0.07 2.27 5.53 -2.39 -0.01 2.26 16 10 C -0.14 -4.12 8.80 71.98 0.63 -3.48 16 11 C -0.11 -3.26 3.39 29.85 0.10 -3.16 16 12 C 0.49 20.63 7.39 87.66 0.65 21.28 16 13 O -0.59 -30.29 13.54 -3.05 -0.04 -30.33 16 14 N -0.61 -26.44 2.86 -851.12 -2.43 -28.88 16 15 C 0.08 2.37 10.24 127.77 1.31 3.67 16 16 C 0.26 14.26 5.16 85.63 0.44 14.71 16 17 C -0.54 -31.82 9.39 25.60 0.24 -31.58 16 18 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 19 C 0.01 0.38 5.46 84.66 0.46 0.84 16 20 N -0.93 -56.93 13.29 21.45 0.28 -56.65 16 21 Si 0.97 45.50 29.54 68.60 2.03 47.52 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 24 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 25 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.06 1.44 6.54 -2.39 -0.02 1.42 16 27 H 0.08 1.40 8.05 -2.39 -0.02 1.38 16 28 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 29 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 30 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 31 H 0.13 2.22 7.18 -2.91 -0.02 2.20 16 32 H 0.05 1.76 5.95 -2.39 -0.01 1.75 16 33 H 0.06 1.62 7.75 -2.39 -0.02 1.60 16 34 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.10 2.63 7.40 -2.39 -0.02 2.61 16 36 H 0.12 2.60 7.25 -2.39 -0.02 2.58 16 37 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 39 H 0.09 2.13 6.44 -2.39 -0.02 2.12 16 40 H 0.02 1.19 8.07 -2.39 -0.02 1.17 16 41 H 0.00 -0.14 7.42 -2.39 -0.02 -0.16 16 42 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -74.18 341.06 5.94 -68.24 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.99 Total: 13.14 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: 5.11 Total: -13.05 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -2.15 Total: -85.52 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.04 Total: -30.33 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -74.18 5.94 -68.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116179855.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.711 kcal (2) G-P(sol) polarization free energy of solvation -74.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds