Wall clock time and date at job start Mon Mar 30 2020 02:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38262 * 119.99849 * 2 1 4 4 C 1.38207 * 119.99700 * 180.22916 * 3 2 1 5 5 C 1.38264 * 120.00156 * 359.80664 * 4 3 2 6 6 C 1.38209 * 119.99836 * 359.97438 * 5 4 3 7 7 C 1.38215 * 120.00155 * 179.78374 * 2 1 3 8 8 C 1.50701 * 119.99795 * 0.02562 * 7 2 1 9 9 H 1.09005 * 109.47142 * 353.97780 * 8 7 2 10 10 C 1.52998 * 109.46972 * 113.97730 * 8 7 2 11 11 C 1.53003 * 109.46918 * 233.97777 * 8 7 2 12 12 C 1.50698 * 109.46953 * 175.00126 * 11 8 7 13 13 O 1.21280 * 120.00236 * 359.97438 * 12 11 8 14 14 N 1.34783 * 119.99906 * 180.02562 * 12 11 8 15 15 C 1.46493 * 119.99914 * 179.97438 * 14 12 11 16 16 H 1.08992 * 109.47577 * 324.99873 * 15 14 12 17 17 C 1.53004 * 109.47007 * 84.99839 * 15 14 12 18 18 C 1.50699 * 109.47147 * 204.99229 * 15 14 12 19 19 H 1.08005 * 119.99963 * 0.02562 * 18 15 14 20 20 C 1.37874 * 120.00227 * 179.97438 * 18 15 14 21 21 N 1.31520 * 119.99983 * 0.02562 * 20 18 15 22 22 Si 1.86796 * 120.00076 * 180.02562 * 20 18 15 23 23 H 1.48506 * 109.47241 * 90.00069 * 22 20 18 24 24 H 1.48503 * 109.47098 * 209.99969 * 22 20 18 25 25 H 1.48499 * 109.47199 * 329.99916 * 22 20 18 26 26 H 1.08999 * 109.47595 * 264.60649 * 1 2 3 27 27 H 1.09004 * 109.47036 * 24.60922 * 1 2 3 28 28 H 1.09008 * 109.46784 * 144.60307 * 1 2 3 29 29 H 1.07993 * 120.00130 * 0.06399 * 3 2 1 30 30 H 1.08002 * 120.00219 * 179.83707 * 4 3 2 31 31 H 1.08004 * 119.99793 * 180.02562 * 5 4 3 32 32 H 1.08001 * 119.99931 * 179.97438 * 6 5 4 33 33 H 1.09006 * 109.46615 * 179.97438 * 10 8 7 34 34 H 1.08991 * 109.47364 * 299.99351 * 10 8 7 35 35 H 1.08997 * 109.47336 * 60.00306 * 10 8 7 36 36 H 1.08999 * 109.46906 * 294.99988 * 11 8 7 37 37 H 1.08999 * 109.47138 * 54.99828 * 11 8 7 38 38 H 0.97000 * 119.99297 * 359.97438 * 14 12 11 39 39 H 1.08998 * 109.47576 * 59.99807 * 17 15 14 40 40 H 1.09007 * 109.47066 * 179.97438 * 17 15 14 41 41 H 1.09000 * 109.46839 * 299.99427 * 17 15 14 42 42 H 0.96997 * 120.00141 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1974 -0.0048 5 6 4.2717 0.0000 -0.0055 6 6 3.5806 -1.1969 -0.0010 7 6 2.1981 -1.1969 0.0045 8 6 1.4446 -2.5020 0.0089 9 1 0.3778 -2.3053 0.1156 10 6 1.6978 -3.2415 -1.3064 11 6 1.9239 -3.3637 1.1788 12 6 1.0871 -4.6146 1.2572 13 8 0.1949 -4.7986 0.4565 14 7 1.3295 -5.5284 2.2178 15 6 0.5157 -6.7441 2.2944 16 1 -0.5093 -6.5141 2.0040 17 6 1.0886 -7.8017 1.3487 18 6 0.5317 -7.2712 3.7061 19 1 1.0917 -6.7523 4.4700 20 6 -0.1694 -8.4154 4.0227 21 7 -0.8518 -9.0471 3.0926 22 14 -0.1502 -9.0684 5.7727 23 1 -1.2722 -8.4674 6.5378 24 1 -0.3007 -10.5456 5.7516 25 1 1.1377 -8.7113 6.4202 26 1 -0.3634 -0.0966 1.0231 27 1 -0.3633 0.9344 -0.4280 28 1 -0.3633 -0.8378 -0.5953 29 1 1.6583 2.1327 0.0010 30 1 4.1204 2.1327 -0.0074 31 1 5.3517 0.0000 -0.0089 32 1 4.1206 -2.1323 -0.0020 33 1 1.1531 -4.1857 -1.3030 34 1 1.3563 -2.6277 -2.1399 35 1 2.7645 -3.4382 -1.4131 36 1 2.9686 -3.6344 1.0265 37 1 1.8257 -2.8021 2.1078 38 1 2.0428 -5.3810 2.8584 39 1 2.1137 -8.0318 1.6390 40 1 0.4833 -8.7065 1.4060 41 1 1.0770 -7.4205 0.3276 42 1 -1.3453 -9.8518 3.3155 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116183556.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:59 Heat of formation + Delta-G solvation = -38.231306 kcal Electronic energy + Delta-G solvation = -20986.025792 eV Core-core repulsion = 17929.894190 eV Total energy + Delta-G solvation = -3056.131602 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.00003 -38.74279 -35.33692 -34.37189 -32.76920 -32.35236 -30.03182 -29.10209 -27.05488 -26.88941 -25.23895 -23.68614 -21.80989 -21.02314 -19.76123 -19.23793 -17.22295 -16.47822 -15.73763 -15.63641 -15.09674 -14.80661 -14.60654 -14.19901 -13.91114 -13.62497 -13.15821 -13.13409 -12.73450 -12.49186 -12.36113 -12.32696 -12.02341 -11.84012 -11.48372 -11.29475 -11.08805 -11.01587 -10.96036 -10.69652 -10.56509 -10.39072 -10.28911 -10.22302 -9.04197 -8.92905 -8.80375 -8.57539 -8.52256 -7.86265 -6.11582 -4.20760 1.31197 1.34132 3.24756 3.31353 3.33215 3.45841 3.69488 4.13146 4.38915 4.73100 4.79644 4.91371 4.95598 5.14346 5.20535 5.25740 5.29029 5.43881 5.50389 5.59166 5.66394 5.77932 5.79109 5.82008 5.94428 6.03229 6.12969 6.21838 6.29888 6.44725 6.47888 6.62936 6.73534 6.84405 6.97687 6.99272 7.17232 7.50041 7.58962 7.71384 7.93583 8.16787 8.71036 8.80214 9.18308 9.47257 10.94377 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030932 B = 0.003439 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.993160 B = 8140.575445 C = 8276.073058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.082 4.082 3 C -0.121 4.121 4 C -0.127 4.127 5 C -0.126 4.126 6 C -0.112 4.112 7 C -0.070 4.070 8 C -0.040 4.040 9 H 0.091 0.909 10 C -0.147 4.147 11 C -0.135 4.135 12 C 0.501 3.499 13 O -0.554 6.554 14 N -0.711 5.711 15 C 0.264 3.736 16 H 0.048 0.952 17 C -0.146 4.146 18 C -0.534 4.534 19 H 0.061 0.939 20 C 0.066 3.934 21 N -0.884 5.884 22 Si 0.901 3.099 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.084 0.916 34 H 0.048 0.952 35 H 0.046 0.954 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.388 0.612 39 H 0.025 0.975 40 H 0.089 0.911 41 H 0.014 0.986 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.265 17.380 -5.541 20.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.082 4.082 3 C -0.139 4.139 4 C -0.145 4.145 5 C -0.144 4.144 6 C -0.130 4.130 7 C -0.070 4.070 8 C -0.059 4.059 9 H 0.110 0.890 10 C -0.204 4.204 11 C -0.175 4.175 12 C 0.286 3.714 13 O -0.433 6.433 14 N -0.359 5.359 15 C 0.162 3.838 16 H 0.066 0.934 17 C -0.205 4.205 18 C -0.572 4.572 19 H 0.079 0.921 20 C -0.137 4.137 21 N -0.521 5.521 22 Si 0.729 3.271 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.220 0.780 39 H 0.044 0.956 40 H 0.108 0.892 41 H 0.033 0.967 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.488 17.038 -6.130 19.594 hybrid contribution 0.524 -0.279 1.337 1.463 sum 8.012 16.759 -4.793 19.184 Atomic orbital electron populations 1.20879 0.91276 1.02757 1.02758 1.19826 0.96115 0.92569 0.99695 1.20998 0.94257 0.97286 1.01387 1.21070 0.94304 0.97897 1.01184 1.21096 0.99657 0.92580 1.01097 1.21025 0.93738 0.98086 1.00104 1.19871 0.93669 0.94528 0.98953 1.19957 1.00267 0.90418 0.95230 0.89041 1.21936 1.01297 1.01864 0.95262 1.21760 1.00447 0.95371 0.99926 1.20423 0.84681 0.84593 0.81687 1.90608 1.33080 1.78608 1.41028 1.46552 1.36443 1.22185 1.30693 1.18712 0.90867 0.79093 0.95112 0.93429 1.22071 0.99741 1.02613 0.96067 1.21238 1.31813 1.10282 0.93878 0.92131 1.24893 0.94896 0.96332 0.97626 1.69905 1.30982 1.18689 1.32562 0.86455 0.78459 0.78046 0.84174 1.20564 1.21077 1.19853 0.90982 0.91833 0.90708 0.86367 0.86474 0.86369 0.86058 0.89730 0.93265 0.93446 0.89576 0.89541 0.78009 0.95568 0.89227 0.96670 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 9.14 36.01 0.33 -0.91 16 2 C -0.08 -0.95 5.88 -104.62 -0.62 -1.56 16 3 C -0.12 -1.25 9.68 -39.58 -0.38 -1.63 16 4 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 5 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 6 C -0.11 -1.25 8.79 -39.59 -0.35 -1.60 16 7 C -0.07 -0.86 4.78 -104.62 -0.50 -1.36 16 8 C -0.04 -0.55 1.94 -91.77 -0.18 -0.73 16 9 H 0.09 1.36 5.54 -51.93 -0.29 1.07 16 10 C -0.15 -2.06 8.80 37.16 0.33 -1.74 16 11 C -0.13 -1.92 4.83 -27.88 -0.13 -2.06 16 12 C 0.50 9.72 7.51 -10.98 -0.08 9.64 16 13 O -0.55 -12.67 13.63 5.56 0.08 -12.60 16 14 N -0.71 -14.74 5.07 -54.94 -0.28 -15.02 16 15 C 0.26 6.73 2.56 -69.08 -0.18 6.56 16 16 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 17 C -0.15 -3.66 9.26 37.16 0.34 -3.31 16 18 C -0.53 -14.21 8.73 -34.44 -0.30 -14.51 16 19 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 20 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 21 N -0.88 -25.01 11.32 55.43 0.63 -24.38 16 22 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.54 8.05 -51.93 -0.42 0.13 16 28 H 0.07 0.82 6.54 -51.92 -0.34 0.48 16 29 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 31 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 32 H 0.12 1.24 7.18 -52.49 -0.38 0.86 16 33 H 0.08 1.44 5.95 -51.93 -0.31 1.13 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.60 7.75 -51.93 -0.40 0.20 16 36 H 0.09 1.07 7.29 -51.93 -0.38 0.69 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.39 6.98 8.54 -40.82 -0.35 6.63 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 2.43 6.07 -51.92 -0.32 2.12 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 339.59 15.07 5.12 5.12 Total: -1.00 -30.26 339.59 -8.58 -38.84 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -6.49 Total: 7.22 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -2.61 Total: -14.85 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.35 Total: -39.40 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.08 Total: -12.60 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.26 -8.58 -38.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116183556.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.606 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds