Wall clock time and date at job start Mon Mar 30 2020 02:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38262 * 119.99849 * 2 1 4 4 C 1.38207 * 119.99700 * 180.22916 * 3 2 1 5 5 C 1.38264 * 120.00156 * 359.80664 * 4 3 2 6 6 C 1.38209 * 119.99836 * 359.97438 * 5 4 3 7 7 C 1.38215 * 120.00155 * 179.78374 * 2 1 3 8 8 C 1.50701 * 119.99795 * 0.02562 * 7 2 1 9 9 H 1.09005 * 109.47142 * 353.97780 * 8 7 2 10 10 C 1.52998 * 109.46972 * 113.97730 * 8 7 2 11 11 C 1.53003 * 109.46918 * 233.97777 * 8 7 2 12 12 C 1.50698 * 109.46953 * 175.00126 * 11 8 7 13 13 O 1.21280 * 120.00236 * 359.97438 * 12 11 8 14 14 N 1.34783 * 119.99906 * 180.02562 * 12 11 8 15 15 C 1.46493 * 119.99914 * 179.97438 * 14 12 11 16 16 H 1.08992 * 109.47577 * 324.99873 * 15 14 12 17 17 C 1.53004 * 109.47007 * 84.99839 * 15 14 12 18 18 C 1.50699 * 109.47147 * 204.99229 * 15 14 12 19 19 H 1.08005 * 119.99963 * 0.02562 * 18 15 14 20 20 C 1.37874 * 120.00227 * 179.97438 * 18 15 14 21 21 N 1.31520 * 119.99983 * 0.02562 * 20 18 15 22 22 Si 1.86796 * 120.00076 * 180.02562 * 20 18 15 23 23 H 1.48506 * 109.47241 * 90.00069 * 22 20 18 24 24 H 1.48503 * 109.47098 * 209.99969 * 22 20 18 25 25 H 1.48499 * 109.47199 * 329.99916 * 22 20 18 26 26 H 1.08999 * 109.47595 * 264.60649 * 1 2 3 27 27 H 1.09004 * 109.47036 * 24.60922 * 1 2 3 28 28 H 1.09008 * 109.46784 * 144.60307 * 1 2 3 29 29 H 1.07993 * 120.00130 * 0.06399 * 3 2 1 30 30 H 1.08002 * 120.00219 * 179.83707 * 4 3 2 31 31 H 1.08004 * 119.99793 * 180.02562 * 5 4 3 32 32 H 1.08001 * 119.99931 * 179.97438 * 6 5 4 33 33 H 1.09006 * 109.46615 * 179.97438 * 10 8 7 34 34 H 1.08991 * 109.47364 * 299.99351 * 10 8 7 35 35 H 1.08997 * 109.47336 * 60.00306 * 10 8 7 36 36 H 1.08999 * 109.46906 * 294.99988 * 11 8 7 37 37 H 1.08999 * 109.47138 * 54.99828 * 11 8 7 38 38 H 0.97000 * 119.99297 * 359.97438 * 14 12 11 39 39 H 1.08998 * 109.47576 * 59.99807 * 17 15 14 40 40 H 1.09007 * 109.47066 * 179.97438 * 17 15 14 41 41 H 1.09000 * 109.46839 * 299.99427 * 17 15 14 42 42 H 0.96997 * 120.00141 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1974 -0.0048 5 6 4.2717 0.0000 -0.0055 6 6 3.5806 -1.1969 -0.0010 7 6 2.1981 -1.1969 0.0045 8 6 1.4446 -2.5020 0.0089 9 1 0.3778 -2.3053 0.1156 10 6 1.6978 -3.2415 -1.3064 11 6 1.9239 -3.3637 1.1788 12 6 1.0871 -4.6146 1.2572 13 8 0.1949 -4.7986 0.4565 14 7 1.3295 -5.5284 2.2178 15 6 0.5157 -6.7441 2.2944 16 1 -0.5093 -6.5141 2.0040 17 6 1.0886 -7.8017 1.3487 18 6 0.5317 -7.2712 3.7061 19 1 1.0917 -6.7523 4.4700 20 6 -0.1694 -8.4154 4.0227 21 7 -0.8518 -9.0471 3.0926 22 14 -0.1502 -9.0684 5.7727 23 1 -1.2722 -8.4674 6.5378 24 1 -0.3007 -10.5456 5.7516 25 1 1.1377 -8.7113 6.4202 26 1 -0.3634 -0.0966 1.0231 27 1 -0.3633 0.9344 -0.4280 28 1 -0.3633 -0.8378 -0.5953 29 1 1.6583 2.1327 0.0010 30 1 4.1204 2.1327 -0.0074 31 1 5.3517 0.0000 -0.0089 32 1 4.1206 -2.1323 -0.0020 33 1 1.1531 -4.1857 -1.3030 34 1 1.3563 -2.6277 -2.1399 35 1 2.7645 -3.4382 -1.4131 36 1 2.9686 -3.6344 1.0265 37 1 1.8257 -2.8021 2.1078 38 1 2.0428 -5.3810 2.8584 39 1 2.1137 -8.0318 1.6390 40 1 0.4833 -8.7065 1.4060 41 1 1.0770 -7.4205 0.3276 42 1 -1.3453 -9.8518 3.3155 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116183556.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:58 Heat of formation + Delta-G solvation = -54.969608 kcal Electronic energy + Delta-G solvation = -20986.751619 eV Core-core repulsion = 17929.894190 eV Total energy + Delta-G solvation = -3056.857430 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.09227 -40.10666 -36.92878 -35.76498 -34.29799 -33.57063 -31.40653 -30.46406 -28.42399 -27.69001 -27.32844 -24.70072 -23.18465 -22.22391 -21.17766 -20.60123 -18.86041 -17.76819 -17.19624 -16.94336 -16.60220 -16.04220 -15.82768 -15.61631 -14.95357 -14.86337 -14.51788 -14.21663 -14.10454 -13.89973 -13.73429 -13.44436 -13.20075 -13.00724 -12.93081 -12.82772 -12.78276 -12.54558 -12.25943 -12.16073 -12.11635 -12.06766 -11.56846 -11.39033 -11.10189 -10.65720 -10.46128 -9.68742 -9.62458 -9.40661 -8.17495 -6.35083 0.50408 0.55569 1.44732 1.45123 1.56009 1.89520 2.36453 2.67900 2.92260 3.12791 3.75567 3.82102 4.08502 4.10996 4.18154 4.29299 4.33197 4.50106 4.54626 4.64517 4.70153 4.76738 4.79486 4.86178 4.88343 4.92615 4.97459 5.06495 5.11438 5.21128 5.30841 5.35460 5.40856 5.46567 5.63889 5.67593 5.69946 5.72173 5.85969 5.93284 6.11719 6.20548 6.73712 7.02645 7.33312 7.62730 8.88758 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030932 B = 0.003439 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.993160 B = 8140.575445 C = 8276.073058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.097 4.097 3 C -0.127 4.127 4 C -0.127 4.127 5 C -0.130 4.130 6 C -0.120 4.120 7 C -0.085 4.085 8 C -0.035 4.035 9 H 0.073 0.927 10 C -0.141 4.141 11 C -0.120 4.120 12 C 0.497 3.503 13 O -0.593 6.593 14 N -0.709 5.709 15 C 0.270 3.730 16 H -0.003 1.003 17 C -0.133 4.133 18 C -0.548 4.548 19 H 0.073 0.927 20 C 0.013 3.987 21 N -0.918 5.918 22 Si 0.972 3.028 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.259 1.259 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.137 0.863 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.130 0.870 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.404 0.596 39 H 0.039 0.961 40 H 0.065 0.935 41 H 0.012 0.988 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.517 19.240 -4.393 22.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.097 4.097 3 C -0.145 4.145 4 C -0.145 4.145 5 C -0.148 4.148 6 C -0.138 4.138 7 C -0.085 4.085 8 C -0.053 4.053 9 H 0.091 0.909 10 C -0.198 4.198 11 C -0.160 4.160 12 C 0.284 3.716 13 O -0.474 6.474 14 N -0.358 5.358 15 C 0.167 3.833 16 H 0.015 0.985 17 C -0.191 4.191 18 C -0.586 4.586 19 H 0.091 0.909 20 C -0.187 4.187 21 N -0.557 5.557 22 Si 0.797 3.203 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.183 1.183 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.155 0.845 30 H 0.160 0.840 31 H 0.159 0.841 32 H 0.148 0.852 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.131 0.869 37 H 0.123 0.877 38 H 0.239 0.761 39 H 0.058 0.942 40 H 0.083 0.917 41 H 0.031 0.969 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.773 18.929 -4.974 21.876 hybrid contribution -0.188 -0.784 0.908 1.214 sum 9.585 18.144 -4.066 20.920 Atomic orbital electron populations 1.20868 0.91121 1.03083 1.02501 1.20013 0.96529 0.93016 1.00181 1.21271 0.94859 0.97503 1.00854 1.21440 0.94242 0.98975 0.99797 1.21408 1.00920 0.92201 1.00228 1.21189 0.93261 0.99168 1.00156 1.19725 0.94186 0.93652 1.00937 1.19826 0.99604 0.91342 0.94567 0.90870 1.21849 1.01677 1.00278 0.96044 1.21732 1.00551 0.92551 1.01146 1.21340 0.84430 0.85516 0.80269 1.90601 1.34959 1.79553 1.42335 1.46330 1.36495 1.21254 1.31765 1.18297 0.89166 0.80900 0.94963 0.98525 1.21887 0.99865 1.01456 0.95933 1.21577 1.31976 1.10542 0.94471 0.90921 1.25816 0.94377 0.96634 1.01852 1.70058 1.31719 1.19097 1.34791 0.85343 0.78920 0.77161 0.78899 1.20369 1.20945 1.18328 0.91211 0.90093 0.92135 0.84505 0.83981 0.84128 0.85184 0.93161 0.92682 0.91930 0.86882 0.87738 0.76129 0.94165 0.91655 0.96886 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 9.14 71.24 0.65 -1.76 16 2 C -0.10 -2.11 5.88 -19.86 -0.12 -2.23 16 3 C -0.13 -2.29 9.68 22.27 0.22 -2.07 16 4 C -0.13 -2.05 10.05 22.27 0.22 -1.82 16 5 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 6 C -0.12 -2.38 8.79 22.27 0.20 -2.19 16 7 C -0.08 -1.96 4.78 -19.87 -0.10 -2.05 16 8 C -0.03 -0.94 1.94 -11.54 -0.02 -0.96 16 9 H 0.07 2.24 5.54 -2.38 -0.01 2.23 16 10 C -0.14 -4.00 8.80 71.98 0.63 -3.36 16 11 C -0.12 -3.28 4.83 29.85 0.14 -3.13 16 12 C 0.50 19.47 7.51 87.66 0.66 20.13 16 13 O -0.59 -28.34 13.63 -3.03 -0.04 -28.38 16 14 N -0.71 -29.43 5.07 -446.11 -2.26 -31.69 16 15 C 0.27 14.16 2.56 44.25 0.11 14.27 16 16 H 0.00 -0.20 7.58 -2.39 -0.02 -0.21 16 17 C -0.13 -6.79 9.26 71.98 0.67 -6.13 16 18 C -0.55 -29.21 8.73 25.60 0.22 -28.99 16 19 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 20 C 0.01 0.71 5.30 84.65 0.45 1.16 16 21 N -0.92 -53.16 11.32 21.45 0.24 -52.92 16 22 Si 0.97 42.16 29.54 68.60 2.03 44.19 16 23 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 25 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 26 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.08 1.29 8.05 -2.38 -0.02 1.27 16 28 H 0.06 1.37 6.54 -2.38 -0.02 1.36 16 29 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 30 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 31 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 32 H 0.13 2.27 7.18 -2.91 -0.02 2.25 16 33 H 0.05 1.77 5.95 -2.38 -0.01 1.76 16 34 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.06 1.53 7.75 -2.39 -0.02 1.51 16 36 H 0.11 2.51 7.29 -2.39 -0.02 2.50 16 37 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.40 14.04 8.54 -92.71 -0.79 13.25 16 39 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.06 3.67 6.07 -2.38 -0.01 3.65 16 41 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -67.08 339.59 4.35 -62.74 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: 0.22 Total: 27.17 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: 4.16 Total: -21.10 kcal Atomic # 7 Polarization: -82.59 SS G_CDS: -2.02 Total: -84.60 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.04 Total: -28.38 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -67.08 4.35 -62.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116183556.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.766 kcal (2) G-P(sol) polarization free energy of solvation -67.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds