Wall clock time and date at job start Mon Mar 30 2020 02:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38255 * 120.00144 * 2 1 4 4 C 1.38221 * 120.00136 * 180.25398 * 3 2 1 5 5 C 1.38261 * 119.99497 * 359.54072 * 4 3 2 6 6 C 1.38209 * 120.00368 * 0.39928 * 5 4 3 7 7 C 1.38218 * 120.00145 * 179.97438 * 2 1 3 8 8 C 1.50704 * 119.99584 * 359.97438 * 7 2 1 9 9 H 1.09003 * 109.47080 * 5.77775 * 8 7 2 10 10 C 1.53005 * 109.46791 * 245.78159 * 8 7 2 11 11 C 1.52999 * 109.47053 * 125.78341 * 8 7 2 12 12 C 1.50706 * 109.46904 * 184.99804 * 11 8 7 13 13 O 1.21287 * 119.99707 * 359.97438 * 12 11 8 14 14 N 1.34765 * 119.99937 * 179.97438 * 12 11 8 15 15 C 1.46504 * 120.00044 * 179.97438 * 14 12 11 16 16 H 1.09001 * 109.47236 * 325.00526 * 15 14 12 17 17 C 1.53001 * 109.46827 * 85.00080 * 15 14 12 18 18 C 1.50700 * 109.47415 * 205.00064 * 15 14 12 19 19 H 1.07998 * 119.99717 * 0.02562 * 18 15 14 20 20 C 1.37871 * 120.00307 * 180.02562 * 18 15 14 21 21 N 1.31521 * 119.99877 * 359.97438 * 20 18 15 22 22 Si 1.86801 * 120.00176 * 180.02562 * 20 18 15 23 23 H 1.48495 * 109.47088 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47011 * 119.99894 * 22 20 18 25 25 H 1.48502 * 109.47200 * 239.99546 * 22 20 18 26 26 H 1.08999 * 109.47323 * 95.59593 * 1 2 3 27 27 H 1.08995 * 109.47282 * 215.60321 * 1 2 3 28 28 H 1.08999 * 109.47058 * 335.59819 * 1 2 3 29 29 H 1.07995 * 120.00173 * 359.97438 * 3 2 1 30 30 H 1.07992 * 120.00273 * 179.72210 * 4 3 2 31 31 H 1.07997 * 119.99482 * 180.22520 * 5 4 3 32 32 H 1.07998 * 120.00161 * 179.83303 * 6 5 4 33 33 H 1.09000 * 109.47042 * 59.99922 * 10 8 7 34 34 H 1.08993 * 109.46984 * 179.97438 * 10 8 7 35 35 H 1.08997 * 109.46748 * 300.00023 * 10 8 7 36 36 H 1.08998 * 109.46993 * 304.99051 * 11 8 7 37 37 H 1.08996 * 109.47270 * 64.99674 * 11 8 7 38 38 H 0.96997 * 120.00217 * 359.97438 * 14 12 11 39 39 H 1.08999 * 109.47076 * 180.02562 * 17 15 14 40 40 H 1.08997 * 109.47503 * 299.99897 * 17 15 14 41 41 H 1.09001 * 109.46848 * 60.00209 * 17 15 14 42 42 H 0.96996 * 119.99870 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0053 5 6 4.2717 -0.0001 -0.0010 6 6 3.5806 -1.1970 0.0002 7 6 2.1981 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0017 9 1 0.3773 -2.3055 -0.1015 10 6 1.7025 -3.2387 1.3177 11 6 1.9194 -3.3663 -1.1681 12 6 1.0823 -4.6173 -1.2407 13 8 0.1936 -4.7999 -0.4358 14 7 1.3211 -5.5331 -2.2001 15 6 0.5077 -6.7496 -2.2704 16 1 0.2439 -7.0690 -1.2622 17 6 -0.7681 -6.4646 -3.0653 18 6 1.2923 -7.8398 -2.9537 19 1 2.2966 -7.6461 -3.3005 20 6 0.7281 -9.0845 -3.1361 21 7 -0.4947 -9.3205 -2.7133 22 14 1.7009 -10.4361 -3.9824 23 1 3.0415 -9.9198 -4.3585 24 1 1.8561 -11.5876 -3.0576 25 1 0.9787 -10.8756 -5.2033 26 1 -0.3634 -0.1002 -1.0227 27 1 -0.3633 -0.8355 0.5982 28 1 -0.3633 0.9359 0.4246 29 1 1.6583 2.1326 -0.0004 30 1 4.1204 2.1325 -0.0098 31 1 5.3516 -0.0001 -0.0015 32 1 4.1206 -2.1323 0.0009 33 1 1.3641 -2.6230 2.1511 34 1 1.1571 -4.1824 1.3188 35 1 2.7696 -3.4352 1.4209 36 1 1.8178 -2.8067 -2.0979 37 1 2.9648 -3.6367 -1.0191 38 1 2.0316 -5.3870 -2.8441 39 1 -1.3736 -7.3695 -3.1173 40 1 -1.3357 -5.6761 -2.5712 41 1 -0.5043 -6.1452 -4.0735 42 1 -0.8918 -10.1961 -2.8420 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116183558.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:02 Heat of formation + Delta-G solvation = -38.238386 kcal Electronic energy + Delta-G solvation = -20984.003949 eV Core-core repulsion = 17927.872040 eV Total energy + Delta-G solvation = -3056.131909 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.99986 -38.74234 -35.33786 -34.37025 -32.77336 -32.35400 -30.03227 -29.09227 -27.06502 -26.89358 -25.23808 -23.67979 -21.80728 -21.02292 -19.78214 -19.22788 -17.21753 -16.48788 -15.73687 -15.57877 -15.12916 -14.87456 -14.57614 -14.19533 -13.95387 -13.57814 -13.14787 -13.06005 -12.84059 -12.49368 -12.41394 -12.24463 -12.05735 -11.73549 -11.57442 -11.29133 -11.10468 -11.01083 -10.88896 -10.76693 -10.54803 -10.39067 -10.26326 -10.23264 -9.02589 -8.93283 -8.80433 -8.58016 -8.53456 -7.85888 -6.11851 -4.20955 1.31063 1.34063 3.23618 3.31427 3.34128 3.45850 3.69390 4.13128 4.38721 4.73037 4.79531 4.91310 4.95672 5.14602 5.20451 5.25322 5.28897 5.43798 5.50151 5.58827 5.65831 5.77481 5.79398 5.83146 5.94667 6.03222 6.12644 6.22059 6.30125 6.44874 6.47989 6.64228 6.73834 6.84386 6.97711 6.99097 7.17230 7.50063 7.59001 7.71321 7.93508 8.16634 8.71024 8.80220 9.18285 9.47137 10.94138 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033075 B = 0.003467 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.352927 B = 8074.960576 C = 8460.504366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.082 4.082 3 C -0.121 4.121 4 C -0.127 4.127 5 C -0.126 4.126 6 C -0.111 4.111 7 C -0.070 4.070 8 C -0.040 4.040 9 H 0.091 0.909 10 C -0.147 4.147 11 C -0.135 4.135 12 C 0.501 3.499 13 O -0.554 6.554 14 N -0.711 5.711 15 C 0.264 3.736 16 H 0.048 0.952 17 C -0.146 4.146 18 C -0.533 4.533 19 H 0.061 0.939 20 C 0.065 3.935 21 N -0.884 5.884 22 Si 0.901 3.099 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.047 0.953 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.388 0.612 39 H 0.089 0.911 40 H 0.014 0.986 41 H 0.025 0.975 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.755 18.515 4.004 20.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.082 4.082 3 C -0.139 4.139 4 C -0.145 4.145 5 C -0.144 4.144 6 C -0.129 4.129 7 C -0.070 4.070 8 C -0.059 4.059 9 H 0.109 0.891 10 C -0.204 4.204 11 C -0.175 4.175 12 C 0.286 3.714 13 O -0.433 6.433 14 N -0.359 5.359 15 C 0.162 3.838 16 H 0.066 0.934 17 C -0.205 4.205 18 C -0.571 4.571 19 H 0.079 0.921 20 C -0.138 4.138 21 N -0.521 5.521 22 Si 0.728 3.272 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.209 1.209 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.220 0.780 39 H 0.108 0.892 40 H 0.033 0.967 41 H 0.044 0.956 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.963 18.193 4.579 19.685 hybrid contribution 0.980 -0.628 -0.896 1.469 sum 6.943 17.565 3.683 19.243 Atomic orbital electron populations 1.20872 0.91298 1.02758 1.02719 1.19820 0.96098 0.92572 0.99749 1.20998 0.94256 0.97276 1.01408 1.21072 0.94301 0.97897 1.01189 1.21097 0.99671 0.92577 1.01068 1.21034 0.93742 0.98109 1.00054 1.19876 0.93675 0.94525 0.98946 1.19957 1.00224 0.90406 0.95266 0.89081 1.21940 1.01352 1.01888 0.95213 1.21762 1.00561 0.95317 0.99869 1.20422 0.84645 0.84729 0.81586 1.90610 1.33404 1.78312 1.41010 1.46550 1.36542 1.21975 1.30795 1.18722 0.87956 0.79685 0.97457 0.93407 1.22071 0.99657 1.01073 0.97713 1.21274 1.00621 0.95867 1.39359 0.92074 1.24896 0.95015 0.98449 0.95414 1.69917 1.13641 1.22675 1.45896 0.86403 0.79964 0.81631 0.79155 1.19744 1.20882 1.20881 0.91022 0.90710 0.91837 0.86377 0.86474 0.86362 0.86022 0.93280 0.89693 0.93399 0.89610 0.89510 0.78008 0.89220 0.96677 0.95567 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.15 36.00 0.33 -0.90 16 2 C -0.08 -0.95 5.88 -104.63 -0.62 -1.56 16 3 C -0.12 -1.24 9.68 -39.58 -0.38 -1.63 16 4 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 5 C -0.13 -1.28 10.05 -39.58 -0.40 -1.67 16 6 C -0.11 -1.26 8.79 -39.59 -0.35 -1.61 16 7 C -0.07 -0.86 4.78 -104.62 -0.50 -1.36 16 8 C -0.04 -0.55 1.94 -91.77 -0.18 -0.73 16 9 H 0.09 1.34 5.53 -51.93 -0.29 1.06 16 10 C -0.15 -2.09 8.80 37.16 0.33 -1.76 16 11 C -0.13 -1.92 4.83 -27.88 -0.13 -2.06 16 12 C 0.50 9.72 7.51 -10.99 -0.08 9.64 16 13 O -0.55 -12.67 13.63 5.55 0.08 -12.60 16 14 N -0.71 -14.73 5.07 -54.93 -0.28 -15.01 16 15 C 0.26 6.72 2.56 -69.08 -0.18 6.54 16 16 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 17 C -0.15 -3.67 9.26 37.16 0.34 -3.33 16 18 C -0.53 -14.17 8.73 -34.44 -0.30 -14.47 16 19 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 20 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 21 N -0.88 -24.99 11.32 55.43 0.63 -24.36 16 22 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.81 6.54 -51.93 -0.34 0.48 16 28 H 0.06 0.54 8.05 -51.93 -0.42 0.12 16 29 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 30 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.12 1.26 7.18 -52.49 -0.38 0.88 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.46 5.95 -51.93 -0.31 1.15 16 35 H 0.05 0.62 7.75 -51.93 -0.40 0.22 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.09 1.09 7.28 -51.93 -0.38 0.72 16 38 H 0.39 6.98 8.54 -40.82 -0.35 6.63 16 39 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 40 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 339.58 15.07 5.12 5.12 Total: -1.00 -30.25 339.58 -8.58 -38.83 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -6.49 Total: 7.22 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -2.61 Total: -14.85 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.35 Total: -39.37 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.08 Total: -12.60 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.25 -8.58 -38.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116183558.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.596 kcal (2) G-P(sol) polarization free energy of solvation -30.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds