Wall clock time and date at job start Mon Mar 30 2020 02:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38255 * 120.00144 * 2 1 4 4 C 1.38221 * 120.00136 * 180.25398 * 3 2 1 5 5 C 1.38261 * 119.99497 * 359.54072 * 4 3 2 6 6 C 1.38209 * 120.00368 * 0.39928 * 5 4 3 7 7 C 1.38218 * 120.00145 * 179.97438 * 2 1 3 8 8 C 1.50704 * 119.99584 * 359.97438 * 7 2 1 9 9 H 1.09003 * 109.47080 * 5.77775 * 8 7 2 10 10 C 1.53005 * 109.46791 * 245.78159 * 8 7 2 11 11 C 1.52999 * 109.47053 * 125.78341 * 8 7 2 12 12 C 1.50706 * 109.46904 * 184.99804 * 11 8 7 13 13 O 1.21287 * 119.99707 * 359.97438 * 12 11 8 14 14 N 1.34765 * 119.99937 * 179.97438 * 12 11 8 15 15 C 1.46504 * 120.00044 * 179.97438 * 14 12 11 16 16 H 1.09001 * 109.47236 * 325.00526 * 15 14 12 17 17 C 1.53001 * 109.46827 * 85.00080 * 15 14 12 18 18 C 1.50700 * 109.47415 * 205.00064 * 15 14 12 19 19 H 1.07998 * 119.99717 * 0.02562 * 18 15 14 20 20 C 1.37871 * 120.00307 * 180.02562 * 18 15 14 21 21 N 1.31521 * 119.99877 * 359.97438 * 20 18 15 22 22 Si 1.86801 * 120.00176 * 180.02562 * 20 18 15 23 23 H 1.48495 * 109.47088 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47011 * 119.99894 * 22 20 18 25 25 H 1.48502 * 109.47200 * 239.99546 * 22 20 18 26 26 H 1.08999 * 109.47323 * 95.59593 * 1 2 3 27 27 H 1.08995 * 109.47282 * 215.60321 * 1 2 3 28 28 H 1.08999 * 109.47058 * 335.59819 * 1 2 3 29 29 H 1.07995 * 120.00173 * 359.97438 * 3 2 1 30 30 H 1.07992 * 120.00273 * 179.72210 * 4 3 2 31 31 H 1.07997 * 119.99482 * 180.22520 * 5 4 3 32 32 H 1.07998 * 120.00161 * 179.83303 * 6 5 4 33 33 H 1.09000 * 109.47042 * 59.99922 * 10 8 7 34 34 H 1.08993 * 109.46984 * 179.97438 * 10 8 7 35 35 H 1.08997 * 109.46748 * 300.00023 * 10 8 7 36 36 H 1.08998 * 109.46993 * 304.99051 * 11 8 7 37 37 H 1.08996 * 109.47270 * 64.99674 * 11 8 7 38 38 H 0.96997 * 120.00217 * 359.97438 * 14 12 11 39 39 H 1.08999 * 109.47076 * 180.02562 * 17 15 14 40 40 H 1.08997 * 109.47503 * 299.99897 * 17 15 14 41 41 H 1.09001 * 109.46848 * 60.00209 * 17 15 14 42 42 H 0.96996 * 119.99870 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0053 5 6 4.2717 -0.0001 -0.0010 6 6 3.5806 -1.1970 0.0002 7 6 2.1981 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0017 9 1 0.3773 -2.3055 -0.1015 10 6 1.7025 -3.2387 1.3177 11 6 1.9194 -3.3663 -1.1681 12 6 1.0823 -4.6173 -1.2407 13 8 0.1936 -4.7999 -0.4358 14 7 1.3211 -5.5331 -2.2001 15 6 0.5077 -6.7496 -2.2704 16 1 0.2439 -7.0690 -1.2622 17 6 -0.7681 -6.4646 -3.0653 18 6 1.2923 -7.8398 -2.9537 19 1 2.2966 -7.6461 -3.3005 20 6 0.7281 -9.0845 -3.1361 21 7 -0.4947 -9.3205 -2.7133 22 14 1.7009 -10.4361 -3.9824 23 1 3.0415 -9.9198 -4.3585 24 1 1.8561 -11.5876 -3.0576 25 1 0.9787 -10.8756 -5.2033 26 1 -0.3634 -0.1002 -1.0227 27 1 -0.3633 -0.8355 0.5982 28 1 -0.3633 0.9359 0.4246 29 1 1.6583 2.1326 -0.0004 30 1 4.1204 2.1325 -0.0098 31 1 5.3516 -0.0001 -0.0015 32 1 4.1206 -2.1323 0.0009 33 1 1.3641 -2.6230 2.1511 34 1 1.1571 -4.1824 1.3188 35 1 2.7696 -3.4352 1.4209 36 1 1.8178 -2.8067 -2.0979 37 1 2.9648 -3.6367 -1.0191 38 1 2.0316 -5.3870 -2.8441 39 1 -1.3736 -7.3695 -3.1173 40 1 -1.3357 -5.6761 -2.5712 41 1 -0.5043 -6.1452 -4.0735 42 1 -0.8918 -10.1961 -2.8420 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116183558.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:02 Heat of formation + Delta-G solvation = -54.963738 kcal Electronic energy + Delta-G solvation = -20984.729215 eV Core-core repulsion = 17927.872040 eV Total energy + Delta-G solvation = -3056.857175 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.09169 -40.10617 -36.93087 -35.76396 -34.29810 -33.57089 -31.40612 -30.45920 -28.44160 -27.68740 -27.32787 -24.69269 -23.18794 -22.22596 -21.18540 -20.60091 -18.85441 -17.78332 -17.14548 -16.92215 -16.63925 -16.14839 -15.81369 -15.54664 -14.93577 -14.87651 -14.41636 -14.38443 -14.07573 -13.89607 -13.66513 -13.49261 -13.20516 -13.00042 -12.95488 -12.82128 -12.71860 -12.60755 -12.27113 -12.14677 -12.13522 -12.04879 -11.56254 -11.39040 -11.08296 -10.64742 -10.49153 -9.68160 -9.62550 -9.40662 -8.17586 -6.35042 0.50373 0.55535 1.43994 1.44965 1.57118 1.89540 2.36458 2.67833 2.92191 3.12812 3.75619 3.82161 4.08546 4.10948 4.17964 4.29248 4.33161 4.50315 4.54564 4.64530 4.70094 4.76349 4.80029 4.86154 4.88191 4.92500 4.97492 5.06068 5.11309 5.21118 5.30656 5.35724 5.40074 5.46913 5.64090 5.67608 5.70042 5.71763 5.85962 5.93176 6.11577 6.20530 6.74003 7.02633 7.33396 7.62713 8.88885 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033075 B = 0.003467 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.352927 B = 8074.960576 C = 8460.504366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.097 4.097 3 C -0.127 4.127 4 C -0.127 4.127 5 C -0.130 4.130 6 C -0.120 4.120 7 C -0.085 4.085 8 C -0.034 4.034 9 H 0.075 0.925 10 C -0.142 4.142 11 C -0.120 4.120 12 C 0.497 3.503 13 O -0.593 6.593 14 N -0.709 5.709 15 C 0.270 3.730 16 H -0.002 1.002 17 C -0.133 4.133 18 C -0.546 4.546 19 H 0.073 0.927 20 C 0.013 3.987 21 N -0.918 5.918 22 Si 0.973 3.027 23 H -0.259 1.259 24 H -0.284 1.284 25 H -0.279 1.279 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.138 0.862 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.129 0.871 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.404 0.596 39 H 0.065 0.935 40 H 0.012 0.988 41 H 0.039 0.961 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.194 20.231 3.078 22.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.097 4.097 3 C -0.145 4.145 4 C -0.144 4.144 5 C -0.148 4.148 6 C -0.138 4.138 7 C -0.085 4.085 8 C -0.053 4.053 9 H 0.093 0.907 10 C -0.199 4.199 11 C -0.160 4.160 12 C 0.284 3.716 13 O -0.475 6.475 14 N -0.358 5.358 15 C 0.166 3.834 16 H 0.016 0.984 17 C -0.192 4.192 18 C -0.584 4.584 19 H 0.091 0.909 20 C -0.187 4.187 21 N -0.557 5.557 22 Si 0.797 3.203 23 H -0.183 1.183 24 H -0.210 1.210 25 H -0.204 1.204 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.155 0.845 30 H 0.160 0.840 31 H 0.158 0.842 32 H 0.147 0.853 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.239 0.761 39 H 0.084 0.916 40 H 0.031 0.969 41 H 0.058 0.942 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.431 19.942 3.642 21.955 hybrid contribution 0.205 -1.086 -0.540 1.230 sum 8.636 18.856 3.102 20.970 Atomic orbital electron populations 1.20866 0.91051 1.03094 1.02549 1.20010 0.96565 0.92963 1.00139 1.21276 0.94830 0.97526 1.00830 1.21440 0.94270 0.98937 0.99787 1.21402 1.00903 0.92217 1.00260 1.21188 0.93317 0.99133 1.00187 1.19723 0.94145 0.93673 1.00951 1.19826 0.99678 0.91301 0.94482 0.90708 1.21854 1.01603 1.00296 0.96164 1.21734 1.00495 0.92536 1.01227 1.21338 0.84417 0.85632 0.80168 1.90603 1.35314 1.79277 1.42258 1.46327 1.36659 1.20944 1.31903 1.18307 0.88842 0.81659 0.94550 0.98435 1.21892 0.99238 0.99740 0.98328 1.21601 1.01178 0.96374 1.39258 0.90888 1.25819 0.95924 1.00963 0.96008 1.70066 1.15336 1.23303 1.46988 0.85289 0.78945 0.78210 0.77837 1.18305 1.20983 1.20439 0.91106 0.92136 0.90094 0.84454 0.83978 0.84192 0.85308 0.92639 0.93234 0.92056 0.87529 0.87099 0.76130 0.91623 0.96939 0.94208 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 9.15 71.23 0.65 -1.70 16 2 C -0.10 -2.07 5.88 -19.87 -0.12 -2.19 16 3 C -0.13 -2.26 9.68 22.27 0.22 -2.04 16 4 C -0.13 -2.04 10.05 22.27 0.22 -1.81 16 5 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 6 C -0.12 -2.42 8.79 22.27 0.20 -2.22 16 7 C -0.08 -1.95 4.78 -19.86 -0.10 -2.05 16 8 C -0.03 -0.92 1.94 -11.54 -0.02 -0.95 16 9 H 0.07 2.26 5.53 -2.39 -0.01 2.25 16 10 C -0.14 -4.08 8.80 71.98 0.63 -3.45 16 11 C -0.12 -3.28 4.83 29.85 0.14 -3.14 16 12 C 0.50 19.47 7.51 87.66 0.66 20.13 16 13 O -0.59 -28.34 13.63 -3.05 -0.04 -28.38 16 14 N -0.71 -29.42 5.07 -446.09 -2.26 -31.68 16 15 C 0.27 14.13 2.56 44.24 0.11 14.25 16 16 H 0.00 -0.14 7.58 -2.39 -0.02 -0.16 16 17 C -0.13 -6.84 9.26 71.98 0.67 -6.18 16 18 C -0.55 -29.08 8.73 25.60 0.22 -28.86 16 19 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 20 C 0.01 0.68 5.30 84.65 0.45 1.13 16 21 N -0.92 -53.13 11.32 21.45 0.24 -52.89 16 22 Si 0.97 42.14 29.54 68.60 2.03 44.16 16 23 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 24 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 25 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 26 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 1.35 6.54 -2.39 -0.02 1.33 16 28 H 0.08 1.26 8.05 -2.39 -0.02 1.24 16 29 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 30 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 31 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 32 H 0.13 2.31 7.18 -2.91 -0.02 2.29 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.05 1.78 5.95 -2.39 -0.01 1.77 16 35 H 0.06 1.55 7.75 -2.39 -0.02 1.53 16 36 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.11 2.53 7.28 -2.39 -0.02 2.51 16 38 H 0.40 14.04 8.54 -92.71 -0.79 13.25 16 39 H 0.07 3.69 6.07 -2.39 -0.01 3.68 16 40 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -67.01 339.58 4.35 -62.66 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: 0.22 Total: 27.18 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: 4.16 Total: -21.07 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -2.02 Total: -84.56 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.04 Total: -28.38 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -67.01 4.35 -62.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116183558.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.701 kcal (2) G-P(sol) polarization free energy of solvation -67.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds