Wall clock time and date at job start Mon Mar 30 2020 02:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38259 * 119.99777 * 2 1 4 4 C 1.38209 * 119.99645 * 180.23212 * 3 2 1 5 5 C 1.38257 * 120.00144 * 359.81901 * 4 3 2 6 6 C 1.38214 * 120.00195 * 359.97438 * 5 4 3 7 7 C 1.38211 * 119.99837 * 179.79788 * 2 1 3 8 8 C 1.50697 * 120.00056 * 359.97438 * 7 2 1 9 9 H 1.08996 * 109.47568 * 353.98225 * 8 7 2 10 10 C 1.52995 * 109.47148 * 113.98618 * 8 7 2 11 11 C 1.53003 * 109.46809 * 233.98133 * 8 7 2 12 12 C 1.50705 * 109.47108 * 175.00133 * 11 8 7 13 13 O 1.21286 * 119.99573 * 0.02562 * 12 11 8 14 14 N 1.34771 * 120.00159 * 180.02562 * 12 11 8 15 15 C 1.46501 * 119.99867 * 179.72272 * 14 12 11 16 16 H 1.09001 * 109.46864 * 35.27680 * 15 14 12 17 17 C 1.52995 * 109.47131 * 275.27277 * 15 14 12 18 18 C 1.50706 * 109.46923 * 155.27394 * 15 14 12 19 19 H 1.08001 * 120.00171 * 359.97438 * 18 15 14 20 20 C 1.37871 * 119.99912 * 180.02562 * 18 15 14 21 21 N 1.31515 * 120.00268 * 359.97438 * 20 18 15 22 22 Si 1.86800 * 120.00147 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.47031 * 89.99696 * 22 20 18 24 24 H 1.48495 * 109.47284 * 209.99849 * 22 20 18 25 25 H 1.48496 * 109.47028 * 330.00075 * 22 20 18 26 26 H 1.09001 * 109.46878 * 264.60345 * 1 2 3 27 27 H 1.09000 * 109.47020 * 24.59795 * 1 2 3 28 28 H 1.08995 * 109.47303 * 144.60215 * 1 2 3 29 29 H 1.07997 * 120.00087 * 0.06936 * 3 2 1 30 30 H 1.07999 * 119.99857 * 179.83712 * 4 3 2 31 31 H 1.08006 * 120.00012 * 179.97438 * 5 4 3 32 32 H 1.07998 * 120.00151 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.47545 * 59.99337 * 10 8 7 34 34 H 1.09006 * 109.47470 * 180.02562 * 10 8 7 35 35 H 1.09005 * 109.47108 * 299.99799 * 10 8 7 36 36 H 1.08993 * 109.47371 * 55.00374 * 11 8 7 37 37 H 1.09001 * 109.47643 * 295.00017 * 11 8 7 38 38 H 0.96995 * 120.00160 * 359.97438 * 14 12 11 39 39 H 1.08997 * 109.47036 * 60.00433 * 17 15 14 40 40 H 1.09004 * 109.47015 * 179.97438 * 17 15 14 41 41 H 1.08995 * 109.47148 * 299.99909 * 17 15 14 42 42 H 0.97003 * 120.00360 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0048 5 6 4.2717 0.0000 -0.0059 6 6 3.5807 -1.1970 -0.0016 7 6 2.1981 -1.1970 0.0042 8 6 1.4446 -2.5020 0.0094 9 1 0.3779 -2.3053 0.1168 10 6 1.6969 -3.2418 -1.3058 11 6 1.9247 -3.3634 1.1792 12 6 1.0880 -4.6143 1.2586 13 8 0.1958 -4.7988 0.4579 14 7 1.3310 -5.5278 2.2191 15 6 0.5137 -6.7410 2.2999 16 1 0.2449 -7.0655 1.2947 17 6 -0.7580 -6.4469 3.0981 18 6 1.2973 -7.8298 2.9867 19 1 2.3036 -7.6375 3.3284 20 6 0.7298 -9.0717 3.1778 21 7 -0.4954 -9.3061 2.7614 22 14 1.7013 -10.4216 4.0284 23 1 1.4577 -10.3597 5.4920 24 1 1.2690 -11.7443 3.5101 25 1 3.1496 -10.2337 3.7594 26 1 -0.3633 -0.0967 1.0231 27 1 -0.3633 0.9344 -0.4278 28 1 -0.3633 -0.8377 -0.5952 29 1 1.6583 2.1327 0.0011 30 1 4.1204 2.1327 -0.0075 31 1 5.3517 0.0000 -0.0101 32 1 4.1207 -2.1322 -0.0020 33 1 2.7636 -3.4385 -1.4133 34 1 1.1515 -4.1856 -1.3023 35 1 1.3549 -2.6281 -2.1393 36 1 1.8272 -2.8016 2.1081 37 1 2.9694 -3.6342 1.0264 38 1 2.0447 -5.3804 2.8592 39 1 -1.3248 -5.6594 2.6014 40 1 -1.3664 -7.3494 3.1578 41 1 -0.4892 -6.1223 4.1033 42 1 -0.8945 -10.1799 2.8955 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116183560.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:05 Heat of formation + Delta-G solvation = -38.240235 kcal Electronic energy + Delta-G solvation = -20983.783085 eV Core-core repulsion = 17927.651095 eV Total energy + Delta-G solvation = -3056.131990 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.00005 -38.74238 -35.33813 -34.37018 -32.77190 -32.35347 -30.03261 -29.09136 -27.06468 -26.89339 -25.23621 -23.67912 -21.80792 -21.02266 -19.78152 -19.22704 -17.21682 -16.48679 -15.73607 -15.57717 -15.12613 -14.87393 -14.57558 -14.19756 -13.95635 -13.57837 -13.14728 -13.06020 -12.84103 -12.49146 -12.41332 -12.24536 -12.05644 -11.73214 -11.57154 -11.29138 -11.11506 -10.99924 -10.88750 -10.76341 -10.54841 -10.39264 -10.28101 -10.22795 -9.02869 -8.93155 -8.80415 -8.58032 -8.53489 -7.85750 -6.11579 -4.20819 1.31088 1.34061 3.24397 3.31269 3.33457 3.45858 3.69396 4.13121 4.38845 4.73033 4.79504 4.91309 4.95648 5.14612 5.20597 5.25330 5.28934 5.43796 5.50247 5.58815 5.65795 5.77506 5.79350 5.83122 5.94690 6.03235 6.12612 6.22051 6.30118 6.44878 6.47999 6.64174 6.73805 6.84438 6.97705 6.99081 7.17180 7.50154 7.58938 7.71312 7.93511 8.16710 8.70989 8.80170 9.18295 9.47216 10.94348 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033111 B = 0.003465 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.426495 B = 8078.317087 C = 8462.818888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.082 4.082 3 C -0.121 4.121 4 C -0.127 4.127 5 C -0.126 4.126 6 C -0.111 4.111 7 C -0.070 4.070 8 C -0.040 4.040 9 H 0.091 0.909 10 C -0.147 4.147 11 C -0.135 4.135 12 C 0.501 3.499 13 O -0.554 6.554 14 N -0.711 5.711 15 C 0.264 3.736 16 H 0.048 0.952 17 C -0.147 4.147 18 C -0.533 4.533 19 H 0.061 0.939 20 C 0.066 3.934 21 N -0.884 5.884 22 Si 0.901 3.099 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.047 0.953 34 H 0.084 0.916 35 H 0.048 0.952 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.388 0.612 39 H 0.014 0.986 40 H 0.089 0.911 41 H 0.025 0.975 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.752 18.481 -4.116 20.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.082 4.082 3 C -0.139 4.139 4 C -0.145 4.145 5 C -0.144 4.144 6 C -0.129 4.129 7 C -0.070 4.070 8 C -0.058 4.058 9 H 0.109 0.891 10 C -0.204 4.204 11 C -0.175 4.175 12 C 0.286 3.714 13 O -0.433 6.433 14 N -0.359 5.359 15 C 0.162 3.838 16 H 0.066 0.934 17 C -0.205 4.205 18 C -0.572 4.572 19 H 0.079 0.921 20 C -0.137 4.137 21 N -0.521 5.521 22 Si 0.729 3.271 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.220 0.780 39 H 0.033 0.967 40 H 0.108 0.892 41 H 0.044 0.956 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.956 18.153 -4.692 19.673 hybrid contribution 0.988 -0.617 0.908 1.477 sum 6.943 17.536 -3.784 19.237 Atomic orbital electron populations 1.20875 0.91296 1.02759 1.02715 1.19822 0.96099 0.92572 0.99747 1.20996 0.94257 0.97277 1.01409 1.21069 0.94302 0.97897 1.01190 1.21099 0.99670 0.92577 1.01070 1.21036 0.93742 0.98108 1.00053 1.19874 0.93675 0.94524 0.98948 1.19952 1.00210 0.90414 0.95269 0.89083 1.21942 1.01363 1.01875 0.95217 1.21762 1.00552 0.95331 0.99866 1.20423 0.84678 0.84715 0.81566 1.90610 1.33227 1.78218 1.41278 1.46550 1.36163 1.22215 1.30937 1.18716 0.87900 0.79758 0.97406 0.93409 1.22072 0.99685 1.01049 0.97717 1.21237 1.00434 0.96116 1.39410 0.92128 1.24891 0.95019 0.98422 0.95410 1.69905 1.13468 1.22911 1.45851 0.86456 0.80107 0.81019 0.79561 1.20559 1.21073 1.19862 0.91027 0.91835 0.90710 0.86375 0.86476 0.86361 0.86022 0.93398 0.89690 0.93282 0.89609 0.89512 0.78012 0.96676 0.89220 0.95570 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.14 36.01 0.33 -0.90 16 2 C -0.08 -0.95 5.88 -104.62 -0.62 -1.56 16 3 C -0.12 -1.24 9.68 -39.58 -0.38 -1.63 16 4 C -0.13 -1.23 10.05 -39.59 -0.40 -1.63 16 5 C -0.13 -1.28 10.05 -39.58 -0.40 -1.67 16 6 C -0.11 -1.26 8.80 -39.58 -0.35 -1.61 16 7 C -0.07 -0.86 4.78 -104.63 -0.50 -1.36 16 8 C -0.04 -0.55 1.94 -91.77 -0.18 -0.72 16 9 H 0.09 1.34 5.54 -51.93 -0.29 1.06 16 10 C -0.15 -2.09 8.80 37.16 0.33 -1.76 16 11 C -0.13 -1.92 4.83 -27.88 -0.13 -2.06 16 12 C 0.50 9.72 7.51 -10.99 -0.08 9.64 16 13 O -0.55 -12.67 13.63 5.55 0.08 -12.60 16 14 N -0.71 -14.73 5.07 -54.93 -0.28 -15.01 16 15 C 0.26 6.73 2.56 -69.08 -0.18 6.56 16 16 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 17 C -0.15 -3.67 9.26 37.15 0.34 -3.33 16 18 C -0.53 -14.19 8.73 -34.44 -0.30 -14.49 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 20 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 21 N -0.88 -25.00 11.32 55.43 0.63 -24.38 16 22 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 24 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.54 8.05 -51.93 -0.42 0.12 16 28 H 0.07 0.81 6.54 -51.93 -0.34 0.47 16 29 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 30 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 32 H 0.12 1.26 7.18 -52.49 -0.38 0.88 16 33 H 0.05 0.62 7.75 -51.93 -0.40 0.22 16 34 H 0.08 1.46 5.95 -51.93 -0.31 1.15 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.09 1.09 7.28 -51.93 -0.38 0.71 16 38 H 0.39 6.98 8.54 -40.82 -0.35 6.63 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 339.60 15.07 5.12 5.12 Total: -1.00 -30.25 339.60 -8.58 -38.83 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.49 Total: 7.24 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -2.61 Total: -14.85 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.35 Total: -39.39 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.08 Total: -12.60 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.25 -8.58 -38.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116183560.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.587 kcal (2) G-P(sol) polarization free energy of solvation -30.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds