Wall clock time and date at job start Mon Mar 30 2020 02:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38251 * 120.00185 * 2 1 4 4 C 1.38215 * 120.00413 * 180.26095 * 3 2 1 5 5 C 1.38262 * 119.99608 * 359.52173 * 4 3 2 6 6 C 1.38210 * 119.99826 * 0.41187 * 5 4 3 7 7 C 1.38212 * 120.00211 * 179.97438 * 2 1 3 8 8 C 1.50703 * 119.99735 * 359.97438 * 7 2 1 9 9 H 1.08996 * 109.47293 * 5.78376 * 8 7 2 10 10 C 1.53000 * 109.47029 * 245.78693 * 8 7 2 11 11 C 1.53000 * 109.47196 * 125.78559 * 8 7 2 12 12 C 1.50707 * 109.47117 * 184.99930 * 11 8 7 13 13 O 1.21285 * 119.99941 * 359.97438 * 12 11 8 14 14 N 1.34773 * 119.99739 * 180.02562 * 12 11 8 15 15 C 1.46504 * 119.99663 * 179.97438 * 14 12 11 16 16 H 1.09002 * 109.47380 * 34.99588 * 15 14 12 17 17 C 1.52999 * 109.46968 * 274.99983 * 15 14 12 18 18 C 1.50694 * 109.47198 * 154.99934 * 15 14 12 19 19 H 1.08005 * 119.99812 * 34.07926 * 18 15 14 20 20 C 1.37874 * 120.00186 * 214.08109 * 18 15 14 21 21 N 1.31517 * 120.00234 * 184.12646 * 20 18 15 22 22 Si 1.86798 * 120.00073 * 4.12824 * 20 18 15 23 23 H 1.48502 * 109.47222 * 84.71838 * 22 20 18 24 24 H 1.48497 * 109.47526 * 204.72084 * 22 20 18 25 25 H 1.48507 * 109.46991 * 324.72241 * 22 20 18 26 26 H 1.08996 * 109.47010 * 95.55608 * 1 2 3 27 27 H 1.09002 * 109.47055 * 215.55588 * 1 2 3 28 28 H 1.09000 * 109.46955 * 335.55071 * 1 2 3 29 29 H 1.08007 * 120.00147 * 359.97438 * 3 2 1 30 30 H 1.07992 * 120.00433 * 179.72091 * 4 3 2 31 31 H 1.08002 * 120.00194 * 180.23348 * 5 4 3 32 32 H 1.08007 * 120.00044 * 179.83212 * 6 5 4 33 33 H 1.09000 * 109.47039 * 299.99505 * 10 8 7 34 34 H 1.09001 * 109.47301 * 59.99645 * 10 8 7 35 35 H 1.09006 * 109.47473 * 179.97438 * 10 8 7 36 36 H 1.08997 * 109.47039 * 304.99704 * 11 8 7 37 37 H 1.08995 * 109.47058 * 65.00079 * 11 8 7 38 38 H 0.96994 * 120.00761 * 0.02562 * 14 12 11 39 39 H 1.09008 * 109.46820 * 185.12808 * 17 15 14 40 40 H 1.09001 * 109.47099 * 305.12644 * 17 15 14 41 41 H 1.09000 * 109.47569 * 65.12916 * 17 15 14 42 42 H 0.96995 * 120.00068 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0055 5 6 4.2718 0.0000 -0.0009 6 6 3.5807 -1.1970 0.0005 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0017 9 1 0.3775 -2.3056 -0.1016 10 6 1.7025 -3.2386 1.3177 11 6 1.9196 -3.3663 -1.1681 12 6 1.0825 -4.6174 -1.2408 13 8 0.1938 -4.8000 -0.4359 14 7 1.3222 -5.5337 -2.1996 15 6 0.5087 -6.7501 -2.2699 16 1 -0.5155 -6.5199 -1.9764 17 6 1.0855 -7.8047 -1.3232 18 6 0.5200 -7.2811 -3.6801 19 1 1.4049 -7.1747 -4.2901 20 6 -0.5993 -7.9028 -4.1916 21 7 -0.5634 -8.4380 -5.3924 22 14 -2.1669 -7.9850 -3.1791 23 1 -2.9437 -6.7333 -3.3669 24 1 -2.9821 -9.1446 -3.6219 25 1 -1.8212 -8.1422 -1.7434 26 1 -0.3633 -0.0995 -1.0228 27 1 -0.3633 -0.8361 0.5976 28 1 -0.3633 0.9355 0.4253 29 1 1.6583 2.1327 -0.0004 30 1 4.1204 2.1326 -0.0100 31 1 5.3518 -0.0001 -0.0014 32 1 4.1207 -2.1324 0.0013 33 1 2.7696 -3.4352 1.4210 34 1 1.3641 -2.6229 2.1511 35 1 1.1571 -4.1824 1.3188 36 1 1.8181 -2.8067 -2.0979 37 1 2.9649 -3.6367 -1.0190 38 1 2.0336 -5.3882 -2.8426 39 1 0.5365 -8.7389 -1.4422 40 1 2.1370 -7.9686 -1.5592 41 1 0.9939 -7.4580 -0.2939 42 1 -1.3507 -8.8756 -5.7521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116183562.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:09 Heat of formation + Delta-G solvation = -38.486419 kcal Electronic energy + Delta-G solvation = -21081.250201 eV Core-core repulsion = 18025.107536 eV Total energy + Delta-G solvation = -3056.142665 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.05125 -38.86727 -35.44063 -34.44069 -32.79952 -32.35156 -30.34912 -29.55250 -27.26225 -26.91859 -25.29392 -23.72961 -21.81910 -20.96321 -19.76025 -19.42286 -17.44150 -16.63461 -15.93195 -15.69046 -15.31930 -14.81180 -14.68480 -14.12521 -13.98360 -13.55996 -13.26184 -13.16282 -12.84625 -12.53887 -12.52706 -12.45039 -12.24561 -12.06264 -11.79834 -11.37551 -11.28775 -11.11632 -11.01775 -10.83709 -10.66799 -10.53974 -10.43736 -9.87740 -9.18983 -9.03598 -8.84685 -8.70722 -8.59991 -8.05376 -6.23198 -4.26771 1.28685 1.31685 3.25584 3.33153 3.34306 3.41368 3.66700 4.03950 4.32693 4.69825 4.73915 4.87611 4.91998 5.09446 5.14936 5.22672 5.24488 5.39911 5.46200 5.56233 5.62772 5.70640 5.74978 5.76537 5.89067 5.99623 6.09737 6.16342 6.25246 6.33640 6.41907 6.44254 6.52385 6.58426 6.68413 6.70749 6.94791 6.95982 7.19782 7.39790 7.58249 8.15357 8.59892 8.77550 9.02794 9.39118 10.88672 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028814 B = 0.003792 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.508567 B = 7382.685096 C = 7517.424620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.082 4.082 3 C -0.121 4.121 4 C -0.126 4.126 5 C -0.126 4.126 6 C -0.111 4.111 7 C -0.071 4.071 8 C -0.041 4.041 9 H 0.091 0.909 10 C -0.146 4.146 11 C -0.135 4.135 12 C 0.501 3.499 13 O -0.558 6.558 14 N -0.706 5.706 15 C 0.231 3.769 16 H 0.049 0.951 17 C -0.147 4.147 18 C -0.531 4.531 19 H 0.078 0.922 20 C 0.080 3.920 21 N -0.890 5.890 22 Si 0.875 3.125 23 H -0.273 1.273 24 H -0.286 1.286 25 H -0.260 1.260 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.393 0.607 39 H 0.053 0.947 40 H 0.044 0.956 41 H 0.029 0.971 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.366 16.936 10.715 21.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.082 4.082 3 C -0.139 4.139 4 C -0.144 4.144 5 C -0.144 4.144 6 C -0.129 4.129 7 C -0.071 4.071 8 C -0.059 4.059 9 H 0.110 0.890 10 C -0.203 4.203 11 C -0.175 4.175 12 C 0.287 3.713 13 O -0.438 6.438 14 N -0.354 5.354 15 C 0.129 3.871 16 H 0.067 0.933 17 C -0.206 4.206 18 C -0.569 4.569 19 H 0.096 0.904 20 C -0.124 4.124 21 N -0.527 5.527 22 Si 0.702 3.298 23 H -0.199 1.199 24 H -0.212 1.212 25 H -0.185 1.185 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.226 0.774 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.048 0.952 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.611 16.659 11.122 21.093 hybrid contribution -0.331 0.027 -0.062 0.338 sum 6.280 16.686 11.060 20.980 Atomic orbital electron populations 1.20878 0.91301 1.02733 1.02771 1.19817 0.96094 0.92580 0.99687 1.21004 0.94268 0.97295 1.01351 1.21077 0.94298 0.97923 1.01094 1.21099 0.99681 0.92572 1.01051 1.21022 0.93710 0.98093 1.00113 1.19846 0.93662 0.94463 0.99098 1.19962 1.00314 0.90490 0.95171 0.89046 1.21935 1.01291 1.01796 0.95310 1.21762 1.00437 0.95191 1.00119 1.20535 0.84590 0.84703 0.81501 1.90598 1.33420 1.78813 1.40983 1.46629 1.36645 1.21418 1.30665 1.19089 0.91340 0.80737 0.95966 0.93303 1.22230 1.00639 1.00043 0.97725 1.21026 1.01375 1.38203 0.96287 0.90399 1.24939 0.98545 0.94246 0.94675 1.69883 1.30180 1.36265 1.16335 0.86885 0.83415 0.78046 0.81490 1.19882 1.21217 1.18466 0.90955 0.90770 0.91816 0.86350 0.86443 0.86338 0.86054 0.93392 0.93249 0.89846 0.89295 0.89409 0.77392 0.92750 0.93711 0.95233 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 9.15 36.01 0.33 -0.89 16 2 C -0.08 -0.93 5.88 -104.63 -0.62 -1.54 16 3 C -0.12 -1.23 9.68 -39.58 -0.38 -1.61 16 4 C -0.13 -1.21 10.05 -39.58 -0.40 -1.61 16 5 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 6 C -0.11 -1.22 8.79 -39.59 -0.35 -1.56 16 7 C -0.07 -0.84 4.78 -104.62 -0.50 -1.34 16 8 C -0.04 -0.54 1.94 -91.77 -0.18 -0.72 16 9 H 0.09 1.31 5.53 -51.93 -0.29 1.03 16 10 C -0.15 -1.95 8.80 37.16 0.33 -1.63 16 11 C -0.13 -1.85 4.83 -27.88 -0.13 -1.99 16 12 C 0.50 9.28 7.51 -10.98 -0.08 9.19 16 13 O -0.56 -12.09 13.63 5.55 0.08 -12.01 16 14 N -0.71 -14.00 5.07 -54.93 -0.28 -14.28 16 15 C 0.23 5.49 2.18 -69.08 -0.15 5.33 16 16 H 0.05 1.27 4.82 -51.93 -0.25 1.02 16 17 C -0.15 -3.23 9.46 37.16 0.35 -2.88 16 18 C -0.53 -14.28 9.05 -34.44 -0.31 -14.59 16 19 H 0.08 2.21 8.06 -52.48 -0.42 1.78 16 20 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 21 N -0.89 -26.25 13.96 55.43 0.77 -25.48 16 22 Si 0.88 21.62 26.96 -169.99 -4.58 17.03 16 23 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.26 -6.33 6.87 56.52 0.39 -5.94 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.79 6.53 -51.93 -0.34 0.46 16 28 H 0.06 0.54 8.05 -51.93 -0.42 0.12 16 29 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 30 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.12 1.19 7.18 -52.48 -0.38 0.81 16 33 H 0.05 0.58 7.75 -51.93 -0.40 0.17 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 1.33 5.95 -51.93 -0.31 1.02 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.09 1.03 7.28 -51.93 -0.38 0.65 16 38 H 0.39 6.89 8.59 -40.82 -0.35 6.54 16 39 H 0.05 1.21 8.14 -51.92 -0.42 0.79 16 40 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 339.41 15.07 5.11 5.11 Total: -1.00 -30.97 339.41 -7.97 -38.94 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.49 Total: 6.01 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -2.59 Total: -15.33 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.50 Total: -39.76 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.08 Total: -12.01 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.58 Total: 17.03 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.97 -7.97 -38.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116183562.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.454 kcal (2) G-P(sol) polarization free energy of solvation -30.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds