Wall clock time and date at job start Mon Mar 30 2020 02:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38251 * 120.00185 * 2 1 4 4 C 1.38215 * 120.00413 * 180.26095 * 3 2 1 5 5 C 1.38262 * 119.99608 * 359.52173 * 4 3 2 6 6 C 1.38210 * 119.99826 * 0.41187 * 5 4 3 7 7 C 1.38212 * 120.00211 * 179.97438 * 2 1 3 8 8 C 1.50703 * 119.99735 * 359.97438 * 7 2 1 9 9 H 1.08996 * 109.47293 * 5.78376 * 8 7 2 10 10 C 1.53000 * 109.47029 * 245.78693 * 8 7 2 11 11 C 1.53000 * 109.47196 * 125.78559 * 8 7 2 12 12 C 1.50707 * 109.47117 * 184.99930 * 11 8 7 13 13 O 1.21285 * 119.99941 * 359.97438 * 12 11 8 14 14 N 1.34773 * 119.99739 * 180.02562 * 12 11 8 15 15 C 1.46504 * 119.99663 * 179.97438 * 14 12 11 16 16 H 1.09002 * 109.47380 * 34.99588 * 15 14 12 17 17 C 1.52999 * 109.46968 * 274.99983 * 15 14 12 18 18 C 1.50694 * 109.47198 * 154.99934 * 15 14 12 19 19 H 1.08005 * 119.99812 * 34.07926 * 18 15 14 20 20 C 1.37874 * 120.00186 * 214.08109 * 18 15 14 21 21 N 1.31517 * 120.00234 * 184.12646 * 20 18 15 22 22 Si 1.86798 * 120.00073 * 4.12824 * 20 18 15 23 23 H 1.48502 * 109.47222 * 84.71838 * 22 20 18 24 24 H 1.48497 * 109.47526 * 204.72084 * 22 20 18 25 25 H 1.48507 * 109.46991 * 324.72241 * 22 20 18 26 26 H 1.08996 * 109.47010 * 95.55608 * 1 2 3 27 27 H 1.09002 * 109.47055 * 215.55588 * 1 2 3 28 28 H 1.09000 * 109.46955 * 335.55071 * 1 2 3 29 29 H 1.08007 * 120.00147 * 359.97438 * 3 2 1 30 30 H 1.07992 * 120.00433 * 179.72091 * 4 3 2 31 31 H 1.08002 * 120.00194 * 180.23348 * 5 4 3 32 32 H 1.08007 * 120.00044 * 179.83212 * 6 5 4 33 33 H 1.09000 * 109.47039 * 299.99505 * 10 8 7 34 34 H 1.09001 * 109.47301 * 59.99645 * 10 8 7 35 35 H 1.09006 * 109.47473 * 179.97438 * 10 8 7 36 36 H 1.08997 * 109.47039 * 304.99704 * 11 8 7 37 37 H 1.08995 * 109.47058 * 65.00079 * 11 8 7 38 38 H 0.96994 * 120.00761 * 0.02562 * 14 12 11 39 39 H 1.09008 * 109.46820 * 185.12808 * 17 15 14 40 40 H 1.09001 * 109.47099 * 305.12644 * 17 15 14 41 41 H 1.09000 * 109.47569 * 65.12916 * 17 15 14 42 42 H 0.96995 * 120.00068 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0055 5 6 4.2718 0.0000 -0.0009 6 6 3.5807 -1.1970 0.0005 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0017 9 1 0.3775 -2.3056 -0.1016 10 6 1.7025 -3.2386 1.3177 11 6 1.9196 -3.3663 -1.1681 12 6 1.0825 -4.6174 -1.2408 13 8 0.1938 -4.8000 -0.4359 14 7 1.3222 -5.5337 -2.1996 15 6 0.5087 -6.7501 -2.2699 16 1 -0.5155 -6.5199 -1.9764 17 6 1.0855 -7.8047 -1.3232 18 6 0.5200 -7.2811 -3.6801 19 1 1.4049 -7.1747 -4.2901 20 6 -0.5993 -7.9028 -4.1916 21 7 -0.5634 -8.4380 -5.3924 22 14 -2.1669 -7.9850 -3.1791 23 1 -2.9437 -6.7333 -3.3669 24 1 -2.9821 -9.1446 -3.6219 25 1 -1.8212 -8.1422 -1.7434 26 1 -0.3633 -0.0995 -1.0228 27 1 -0.3633 -0.8361 0.5976 28 1 -0.3633 0.9355 0.4253 29 1 1.6583 2.1327 -0.0004 30 1 4.1204 2.1326 -0.0100 31 1 5.3518 -0.0001 -0.0014 32 1 4.1207 -2.1324 0.0013 33 1 2.7696 -3.4352 1.4210 34 1 1.3641 -2.6229 2.1511 35 1 1.1571 -4.1824 1.3188 36 1 1.8181 -2.8067 -2.0979 37 1 2.9649 -3.6367 -1.0190 38 1 2.0336 -5.3882 -2.8426 39 1 0.5365 -8.7389 -1.4422 40 1 2.1370 -7.9686 -1.5592 41 1 0.9939 -7.4580 -0.2939 42 1 -1.3507 -8.8756 -5.7521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116183562.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:08 Heat of formation + Delta-G solvation = -56.275644 kcal Electronic energy + Delta-G solvation = -21082.021600 eV Core-core repulsion = 18025.107536 eV Total energy + Delta-G solvation = -3056.914064 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.11756 -40.14188 -36.95327 -35.75747 -34.36842 -33.58041 -31.92117 -30.58365 -28.49419 -27.69458 -27.31818 -24.69106 -23.04844 -22.16047 -21.24517 -20.63401 -19.20545 -17.91258 -17.34072 -16.97999 -16.55557 -16.07612 -15.77272 -15.63326 -14.93137 -14.91000 -14.58363 -14.48864 -14.18908 -13.97743 -13.88433 -13.57735 -13.32473 -13.12513 -13.03807 -12.86573 -12.81426 -12.61588 -12.41949 -12.13863 -12.08555 -11.88273 -11.57197 -11.39057 -11.22193 -10.85481 -10.54443 -9.75070 -9.62856 -9.40988 -8.39358 -6.45350 0.50092 0.55179 1.28749 1.33088 1.43856 1.85065 2.26600 2.51759 2.90962 3.04166 3.74379 3.81902 4.08300 4.10146 4.18185 4.26192 4.32977 4.46953 4.49547 4.56227 4.64601 4.71133 4.75359 4.79149 4.83866 4.85958 4.89139 4.96863 5.05276 5.13447 5.21787 5.30757 5.34983 5.37356 5.43854 5.46598 5.67224 5.69436 5.79680 5.85659 6.13438 6.20215 6.59811 6.96154 7.21157 7.53358 8.75787 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028814 B = 0.003792 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.508567 B = 7382.685096 C = 7517.424620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.098 4.098 3 C -0.128 4.128 4 C -0.128 4.128 5 C -0.130 4.130 6 C -0.120 4.120 7 C -0.085 4.085 8 C -0.036 4.036 9 H 0.074 0.926 10 C -0.141 4.141 11 C -0.123 4.123 12 C 0.500 3.500 13 O -0.590 6.590 14 N -0.708 5.708 15 C 0.234 3.766 16 H 0.028 0.972 17 C -0.141 4.141 18 C -0.527 4.527 19 H 0.056 0.944 20 C 0.032 3.968 21 N -0.931 5.931 22 Si 0.927 3.073 23 H -0.275 1.275 24 H -0.277 1.277 25 H -0.256 1.256 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.136 0.864 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.131 0.869 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.102 0.898 37 H 0.114 0.886 38 H 0.405 0.595 39 H 0.046 0.954 40 H 0.058 0.942 41 H 0.036 0.964 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.586 18.733 11.779 23.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.098 4.098 3 C -0.146 4.146 4 C -0.145 4.145 5 C -0.148 4.148 6 C -0.138 4.138 7 C -0.085 4.085 8 C -0.054 4.054 9 H 0.092 0.908 10 C -0.198 4.198 11 C -0.162 4.162 12 C 0.288 3.712 13 O -0.471 6.471 14 N -0.357 5.357 15 C 0.130 3.870 16 H 0.046 0.954 17 C -0.200 4.200 18 C -0.565 4.565 19 H 0.074 0.926 20 C -0.168 4.168 21 N -0.570 5.570 22 Si 0.752 3.248 23 H -0.201 1.201 24 H -0.203 1.203 25 H -0.180 1.180 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.154 0.846 30 H 0.159 0.841 31 H 0.158 0.842 32 H 0.149 0.851 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.120 0.880 37 H 0.133 0.867 38 H 0.240 0.760 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.055 0.945 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.852 18.474 12.191 23.485 hybrid contribution -0.628 -0.445 -0.378 0.857 sum 7.225 18.029 11.813 22.733 Atomic orbital electron populations 1.20867 0.91099 1.03125 1.02476 1.20011 0.96540 0.93029 1.00184 1.21274 0.94859 0.97553 1.00908 1.21436 0.94260 0.98984 0.99852 1.21411 1.00917 0.92247 1.00243 1.21198 0.93296 0.99145 1.00118 1.19735 0.94162 0.93726 1.00853 1.19846 0.99643 0.91275 0.94675 0.90756 1.21851 1.01740 1.00391 0.95808 1.21748 1.00737 0.92654 1.01107 1.21302 0.84370 0.85394 0.80174 1.90592 1.34949 1.79568 1.42037 1.46413 1.36705 1.20817 1.31733 1.18831 0.91269 0.82558 0.94307 0.95363 1.22116 1.01218 0.99015 0.97608 1.21225 1.00363 1.37462 0.97480 0.92597 1.25609 1.01373 0.94311 0.95548 1.69979 1.31181 1.37879 1.17954 0.86046 0.80284 0.78086 0.80360 1.20058 1.20272 1.17989 0.91290 0.91947 0.90173 0.84597 0.84079 0.84179 0.85074 0.91927 0.92771 0.92732 0.87995 0.86745 0.76024 0.93467 0.92335 0.94478 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.32 9.15 71.24 0.65 -1.67 16 2 C -0.10 -2.06 5.88 -19.87 -0.12 -2.18 16 3 C -0.13 -2.28 9.68 22.27 0.22 -2.06 16 4 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 5 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 6 C -0.12 -2.30 8.79 22.27 0.20 -2.10 16 7 C -0.08 -1.87 4.78 -19.87 -0.10 -1.97 16 8 C -0.04 -0.91 1.94 -11.54 -0.02 -0.93 16 9 H 0.07 2.14 5.53 -2.39 -0.01 2.12 16 10 C -0.14 -3.64 8.80 71.98 0.63 -3.00 16 11 C -0.12 -3.15 4.83 29.85 0.14 -3.01 16 12 C 0.50 18.06 7.51 87.66 0.66 18.72 16 13 O -0.59 -25.49 13.63 -3.05 -0.04 -25.53 16 14 N -0.71 -27.49 5.07 -446.09 -2.26 -29.75 16 15 C 0.23 11.03 2.18 44.24 0.10 11.13 16 16 H 0.03 1.46 4.82 -2.39 -0.01 1.45 16 17 C -0.14 -6.03 9.46 71.98 0.68 -5.35 16 18 C -0.53 -28.53 9.05 25.60 0.23 -28.30 16 19 H 0.06 3.21 8.06 -2.91 -0.02 3.19 16 20 C 0.03 1.80 5.47 84.65 0.46 2.26 16 21 N -0.93 -55.66 13.96 21.45 0.30 -55.36 16 22 Si 0.93 44.81 26.96 68.60 1.85 46.65 16 23 H -0.27 -13.25 7.11 99.48 0.71 -12.55 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.26 -12.06 6.87 99.48 0.68 -11.38 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.06 1.34 6.53 -2.39 -0.02 1.32 16 28 H 0.08 1.24 8.05 -2.39 -0.02 1.22 16 29 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 30 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 31 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 32 H 0.13 2.16 7.18 -2.91 -0.02 2.14 16 33 H 0.06 1.39 7.75 -2.39 -0.02 1.37 16 34 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.05 1.73 5.95 -2.38 -0.01 1.72 16 36 H 0.10 2.40 8.14 -2.39 -0.02 2.39 16 37 H 0.11 2.36 7.28 -2.39 -0.02 2.34 16 38 H 0.40 13.76 8.59 -92.71 -0.80 12.97 16 39 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.06 2.30 8.14 -2.39 -0.02 2.29 16 41 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -66.49 339.41 4.22 -62.27 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.19 Total: 23.94 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: 4.18 Total: -22.22 kcal Atomic # 7 Polarization: -83.15 SS G_CDS: -1.96 Total: -85.11 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.04 Total: -25.53 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.85 Total: 46.65 kcal Total: -66.49 4.22 -62.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116183562.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.992 kcal (2) G-P(sol) polarization free energy of solvation -66.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds