Wall clock time and date at job start Mon Mar 30 2020 02:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21253 * 120.00663 * 2 1 4 4 C 1.47176 * 119.99669 * 179.97438 * 2 1 3 5 5 C 1.39871 * 120.17034 * 273.57089 * 4 2 1 6 6 C 1.50699 * 120.09018 * 0.02562 * 5 4 2 7 7 C 1.37868 * 119.82053 * 179.97438 * 5 4 2 8 8 C 1.38423 * 120.17492 * 359.74562 * 7 5 4 9 9 C 1.50699 * 119.82715 * 180.28062 * 8 7 5 10 10 C 1.38388 * 120.34564 * 0.51155 * 8 7 5 11 11 C 1.50703 * 119.91025 * 179.76582 * 10 8 7 12 12 N 1.46498 * 109.46898 * 99.00095 * 11 10 8 13 13 C 1.46502 * 120.00133 * 272.54840 * 12 11 10 14 14 C 1.36937 * 120.00018 * 92.55205 * 12 11 10 15 15 H 1.07998 * 120.00210 * 358.18607 * 14 12 11 16 16 C 1.38819 * 120.00007 * 178.46268 * 14 12 11 17 17 N 1.31623 * 119.99945 * 7.54150 * 16 14 12 18 18 Si 1.86800 * 119.99908 * 187.54263 * 16 14 12 19 19 H 1.48501 * 109.47189 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46973 * 119.99966 * 18 16 14 21 21 H 1.48505 * 109.46863 * 239.99856 * 18 16 14 22 22 C 1.37899 * 120.17266 * 359.48900 * 10 8 7 23 23 C 1.50706 * 120.08698 * 180.27267 * 22 10 8 24 24 H 1.08998 * 109.47368 * 245.03101 * 1 2 3 25 25 H 1.08995 * 109.46821 * 5.02794 * 1 2 3 26 26 H 1.08997 * 109.47194 * 125.02698 * 1 2 3 27 27 H 1.09002 * 109.47043 * 93.46849 * 6 5 4 28 28 H 1.09001 * 109.47107 * 213.46751 * 6 5 4 29 29 H 1.09003 * 109.47208 * 333.47010 * 6 5 4 30 30 H 1.07999 * 119.91038 * 180.02562 * 7 5 4 31 31 H 1.08999 * 109.46873 * 275.96244 * 9 8 7 32 32 H 1.09001 * 109.47248 * 35.96288 * 9 8 7 33 33 H 1.09004 * 109.47106 * 155.96551 * 9 8 7 34 34 H 1.09001 * 109.47117 * 339.00017 * 11 10 8 35 35 H 1.09003 * 109.46782 * 218.99636 * 11 10 8 36 36 H 1.08998 * 109.47128 * 234.28834 * 13 12 11 37 37 H 1.08998 * 109.46972 * 354.28342 * 13 12 11 38 38 H 1.09001 * 109.46979 * 114.28035 * 13 12 11 39 39 H 0.96994 * 119.99592 * 179.97438 * 17 16 14 40 40 H 1.09004 * 109.46771 * 94.93543 * 23 22 10 41 41 H 1.09000 * 109.47070 * 214.92503 * 23 22 10 42 42 H 1.08992 * 109.46927 * 334.93068 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0500 0.0000 4 6 2.2428 -1.2746 0.0006 5 6 2.5290 -1.9205 1.2077 6 6 2.0842 -1.3136 2.5134 7 6 3.2182 -3.1145 1.1998 8 6 3.6222 -3.6768 0.0012 9 6 4.3696 -4.9854 0.0013 10 6 3.3474 -3.0412 -1.1970 11 6 3.7963 -3.6596 -2.4959 12 7 2.6731 -4.3697 -3.1126 13 6 2.4078 -5.7668 -2.7607 14 6 1.8712 -3.7275 -4.0180 15 1 2.0488 -2.6890 -4.2555 16 6 0.8264 -4.4097 -4.6262 17 7 0.5125 -5.6241 -4.2271 18 14 -0.1341 -3.6044 -6.0113 19 1 0.4122 -2.2477 -6.2688 20 1 -0.0145 -4.4283 -7.2409 21 1 -1.5639 -3.4966 -5.6247 22 6 2.6589 -1.8464 -1.2058 23 6 2.3553 -1.1590 -2.5121 24 1 -0.3634 -0.4338 0.9316 25 1 -0.3633 1.0237 -0.0901 26 1 -0.3633 -0.5898 -0.8415 27 1 1.1158 -1.7271 2.7951 28 1 2.8160 -1.5419 3.2882 29 1 1.9989 -0.2327 2.4013 30 1 3.4397 -3.6147 2.1311 31 1 5.4301 -4.7980 0.1691 32 1 3.9834 -5.6243 0.7955 33 1 4.2358 -5.4804 -0.9606 34 1 4.6079 -4.3612 -2.3030 35 1 4.1451 -2.8767 -3.1695 36 1 2.3726 -6.3697 -3.6682 37 1 3.2016 -6.1348 -2.1107 38 1 1.4519 -5.8355 -2.2415 39 1 -0.2178 -6.1006 -4.6518 40 1 1.3562 -1.4387 -2.8462 41 1 2.4030 -0.0788 -2.3739 42 1 3.0871 -1.4622 -3.2608 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120771298.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:25 Heat of formation + Delta-G solvation = -6.563666 kcal Electronic energy + Delta-G solvation = -22230.404525 eV Core-core repulsion = 19175.646134 eV Total energy + Delta-G solvation = -3054.758391 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.43352 -39.73153 -37.47908 -34.86013 -34.58463 -32.74372 -31.20332 -29.29197 -28.86229 -28.34977 -27.43889 -25.84370 -23.11854 -22.80844 -21.19972 -19.99238 -18.76310 -17.45411 -17.41950 -16.89218 -16.27865 -15.62240 -15.44540 -15.40506 -14.95225 -14.87144 -14.55669 -14.19513 -14.09156 -13.98014 -13.69655 -13.60332 -13.35895 -13.22999 -13.06902 -13.03396 -12.81654 -12.71767 -12.42894 -12.21488 -12.14383 -11.92640 -11.70430 -11.65532 -11.41695 -10.75983 -10.57177 -9.39458 -9.29881 -8.86731 -7.67911 -5.09597 0.27594 0.51308 0.81405 1.45834 1.48397 1.56308 2.51449 2.71445 3.11331 3.40424 3.84393 3.85521 3.91153 3.98540 4.13019 4.28026 4.33353 4.47724 4.48808 4.53579 4.57741 4.66945 4.68672 4.73801 4.75987 4.86541 4.88301 4.94323 5.00091 5.02508 5.04536 5.21634 5.39363 5.39506 5.54689 5.58051 5.66650 5.69686 5.87636 5.91767 6.15034 6.35871 6.36089 7.23572 7.95266 8.33778 9.30164 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016263 B = 0.007156 C = 0.005582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.241605 B = 3911.668335 C = 5015.301430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.421 3.579 3 O -0.490 6.490 4 C -0.190 4.190 5 C -0.066 4.066 6 C -0.113 4.113 7 C -0.133 4.133 8 C -0.068 4.068 9 C -0.121 4.121 10 C -0.115 4.115 11 C 0.182 3.818 12 N -0.611 5.611 13 C 0.186 3.814 14 C -0.238 4.238 15 H 0.092 0.908 16 C -0.065 4.065 17 N -0.947 5.947 18 Si 0.957 3.043 19 H -0.265 1.265 20 H -0.296 1.296 21 H -0.298 1.298 22 C -0.046 4.046 23 C -0.111 4.111 24 H 0.118 0.882 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.054 0.946 30 H 0.150 0.850 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.022 0.978 37 H 0.030 0.970 38 H -0.001 1.001 39 H 0.240 0.760 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.877 5.655 12.590 14.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.299 3.701 3 O -0.367 6.367 4 C -0.191 4.191 5 C -0.067 4.067 6 C -0.169 4.169 7 C -0.151 4.151 8 C -0.069 4.069 9 C -0.177 4.177 10 C -0.118 4.118 11 C 0.056 3.944 12 N -0.334 5.334 13 C 0.041 3.959 14 C -0.368 4.368 15 H 0.110 0.890 16 C -0.257 4.257 17 N -0.598 5.598 18 Si 0.787 3.213 19 H -0.189 1.189 20 H -0.224 1.224 21 H -0.225 1.225 22 C -0.047 4.047 23 C -0.168 4.168 24 H 0.136 0.864 25 H 0.114 0.886 26 H 0.112 0.888 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.168 0.832 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.041 0.959 37 H 0.048 0.952 38 H 0.018 0.982 39 H 0.050 0.950 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.085 6.104 12.484 14.485 hybrid contribution -0.949 0.033 -1.103 1.455 sum 3.137 6.137 11.381 13.306 Atomic orbital electron populations 1.22346 0.91224 1.05759 1.06108 1.22851 0.93047 0.86854 0.67329 1.90510 1.73425 1.35112 1.37608 1.20320 1.05612 0.98758 0.94360 1.20060 0.97612 0.94950 0.94079 1.20876 1.03197 0.99758 0.93087 1.21008 1.00276 0.95693 0.98140 1.20196 0.97467 0.96934 0.92291 1.21028 1.00130 0.93068 1.03445 1.20716 0.99628 0.94181 0.97242 1.19963 0.89688 0.95181 0.89581 1.44294 1.32109 1.09486 1.47480 1.20792 0.94841 0.83670 0.96554 1.19976 1.07387 0.95912 1.13483 0.89010 1.25517 1.00467 0.97406 1.02313 1.70432 1.31641 1.13479 1.44246 0.85321 0.78150 0.78163 0.79704 1.18929 1.22370 1.22532 1.19756 0.96244 0.94846 0.93827 1.20956 1.02815 0.98250 0.94734 0.86409 0.88607 0.88841 0.89117 0.89157 0.92662 0.83238 0.89438 0.90230 0.91679 0.91218 0.92540 0.95916 0.95215 0.98229 0.95007 0.91199 0.92632 0.90880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.59 10.23 71.24 0.73 -3.86 16 2 C 0.42 12.93 3.69 28.03 0.10 13.03 16 3 O -0.49 -17.55 17.76 -2.95 -0.05 -17.60 16 4 C -0.19 -6.30 5.55 -20.15 -0.11 -6.42 16 5 C -0.07 -1.89 5.92 -19.56 -0.12 -2.01 16 6 C -0.11 -2.30 9.68 71.24 0.69 -1.61 16 7 C -0.13 -3.69 9.37 22.23 0.21 -3.48 16 8 C -0.07 -2.16 5.89 -19.79 -0.12 -2.27 16 9 C -0.12 -3.14 9.36 71.24 0.67 -2.47 16 10 C -0.11 -4.26 5.46 -19.91 -0.11 -4.36 16 11 C 0.18 7.14 4.93 85.63 0.42 7.56 16 12 N -0.61 -29.42 2.92 -731.30 -2.13 -31.55 16 13 C 0.19 9.11 8.97 127.77 1.15 10.25 16 14 C -0.24 -12.41 8.62 84.04 0.72 -11.69 16 15 H 0.09 4.54 4.99 -2.91 -0.01 4.52 16 16 C -0.06 -3.56 5.43 84.86 0.46 -3.10 16 17 N -0.95 -55.37 9.48 21.65 0.21 -55.17 16 18 Si 0.96 44.78 29.56 68.60 2.03 46.80 16 19 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 20 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 21 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 22 C -0.05 -1.71 5.92 -19.56 -0.12 -1.83 16 23 C -0.11 -4.14 7.55 71.24 0.54 -3.60 16 24 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.10 1.94 8.12 -2.39 -0.02 1.92 16 26 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.09 1.47 8.11 -2.39 -0.02 1.45 16 29 H 0.05 1.19 6.96 -2.39 -0.02 1.17 16 30 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 31 H 0.09 1.87 8.14 -2.39 -0.02 1.86 16 32 H 0.08 1.78 8.12 -2.39 -0.02 1.77 16 33 H 0.06 1.94 3.59 -2.38 -0.01 1.93 16 34 H 0.07 2.45 5.95 -2.39 -0.01 2.44 16 35 H 0.06 2.21 6.22 -2.39 -0.01 2.19 16 36 H 0.02 1.23 6.78 -2.39 -0.02 1.21 16 37 H 0.03 1.22 5.36 -2.39 -0.01 1.21 16 38 H 0.00 -0.04 7.29 -2.39 -0.02 -0.06 16 39 H 0.24 13.81 8.31 -92.71 -0.77 13.04 16 40 H 0.07 2.79 7.16 -2.39 -0.02 2.78 16 41 H 0.05 1.92 7.21 -2.39 -0.02 1.91 16 42 H 0.07 2.76 4.87 -2.39 -0.01 2.74 16 Total: -1.00 -66.14 327.26 6.20 -59.94 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 1.03 Total: 13.41 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 5.12 Total: -15.84 kcal Atomic # 7 Polarization: -84.79 SS G_CDS: -1.93 Total: -86.72 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.05 Total: -17.60 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -66.14 6.20 -59.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120771298.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.380 kcal (2) G-P(sol) polarization free energy of solvation -66.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds