Wall clock time and date at job start Mon Mar 30 2020 02:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38260 * 120.00491 * 2 1 4 4 C 1.38213 * 120.00392 * 180.02562 * 3 2 1 5 5 C 1.38257 * 119.99830 * 0.02562 * 4 3 2 6 6 C 1.38210 * 120.00028 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.00101 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47035 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.46747 * 300.00139 * 7 6 5 10 10 C 1.50700 * 109.47148 * 59.99888 * 7 6 5 11 11 O 1.21283 * 119.99803 * 0.02562 * 10 7 6 12 12 N 1.34777 * 119.99675 * 180.28037 * 10 7 6 13 13 C 1.46496 * 120.00345 * 359.72090 * 12 10 7 14 14 C 1.46497 * 119.99525 * 179.72583 * 12 10 7 15 15 H 1.08996 * 109.47805 * 359.97438 * 14 12 10 16 16 C 1.53007 * 109.47236 * 119.99976 * 14 12 10 17 17 C 1.50701 * 109.47153 * 239.99364 * 14 12 10 18 18 H 1.08001 * 119.99776 * 0.02562 * 17 14 12 19 19 C 1.37877 * 119.99923 * 179.97438 * 17 14 12 20 20 N 1.31524 * 119.99613 * 180.02562 * 19 17 14 21 21 Si 1.86795 * 120.00191 * 0.02562 * 19 17 14 22 22 H 1.48500 * 109.47212 * 89.99993 * 21 19 17 23 23 H 1.48504 * 109.46936 * 209.99975 * 21 19 17 24 24 H 1.48501 * 109.47226 * 329.99389 * 21 19 17 25 25 C 1.38214 * 119.99987 * 180.27638 * 2 1 3 26 26 H 1.09006 * 109.47043 * 89.99691 * 1 2 3 27 27 H 1.08995 * 109.47542 * 210.00063 * 1 2 3 28 28 H 1.09004 * 109.46747 * 330.00176 * 1 2 3 29 29 H 1.08002 * 119.99242 * 0.02562 * 3 2 1 30 30 H 1.07995 * 120.00001 * 179.97438 * 4 3 2 31 31 H 1.07998 * 119.99974 * 179.97438 * 5 4 3 32 32 H 1.09005 * 109.47323 * 300.00123 * 9 7 6 33 33 H 1.09006 * 109.47458 * 59.99773 * 9 7 6 34 34 H 1.09004 * 109.47239 * 179.97438 * 9 7 6 35 35 H 1.08997 * 109.47115 * 90.00316 * 13 12 10 36 36 H 1.08995 * 109.47364 * 210.00706 * 13 12 10 37 37 H 1.09002 * 109.47090 * 330.00257 * 13 12 10 38 38 H 1.09011 * 109.46614 * 299.99781 * 16 14 12 39 39 H 1.08996 * 109.46839 * 59.99267 * 16 14 12 40 40 H 1.08995 * 109.47124 * 180.02562 * 16 14 12 41 41 H 0.97000 * 119.99467 * 179.97438 * 20 19 17 42 42 H 1.08002 * 119.99796 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0016 6 6 3.5806 -1.1970 -0.0016 7 6 4.3341 -2.5022 -0.0034 8 1 3.6257 -3.3306 -0.0035 9 6 5.2122 -2.5823 -1.2537 10 6 5.2019 -2.5829 1.2260 11 8 5.2076 -1.6706 2.0252 12 7 5.9755 -3.6666 1.4348 13 6 5.9682 -4.7688 0.4697 14 6 6.8237 -3.7424 2.6268 15 1 6.6968 -2.8376 3.2212 16 6 6.4237 -4.9612 3.4608 17 6 8.2661 -3.8707 2.2097 18 1 8.5252 -3.8931 1.1615 19 6 9.2552 -3.9584 3.1663 20 7 10.5141 -4.0698 2.8022 21 14 8.8072 -3.9189 4.9793 22 1 8.5650 -5.3030 5.4596 23 1 9.9226 -3.3150 5.7517 24 1 7.5781 -3.1072 5.1680 25 6 2.1980 -1.1970 -0.0058 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6583 2.1326 0.0004 30 1 4.1205 2.1325 -0.0010 31 1 5.3517 -0.0001 -0.0024 32 1 4.5845 -2.5239 -2.1429 33 1 5.9206 -1.7538 -1.2540 34 1 5.7576 -3.5261 -1.2548 35 1 6.7332 -4.5944 -0.2868 36 1 6.1753 -5.7057 0.9867 37 1 4.9905 -4.8262 -0.0087 38 1 5.3803 -4.8685 3.7625 39 1 6.5509 -5.8658 2.8661 40 1 7.0545 -5.0173 4.3479 41 1 11.2099 -4.1312 3.4752 42 1 1.6580 -2.1322 -0.0107 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121250784.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:53 Heat of formation + Delta-G solvation = -8.093262 kcal Electronic energy + Delta-G solvation = -21637.445526 eV Core-core repulsion = 18582.620808 eV Total energy + Delta-G solvation = -3054.824719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.08948 -38.64968 -35.56365 -34.39974 -32.75852 -32.09721 -30.54628 -29.14423 -26.76662 -26.43902 -25.18923 -24.33572 -22.29557 -21.73447 -19.95702 -18.21073 -17.01060 -16.50358 -16.08810 -15.73725 -15.15404 -14.86908 -14.38563 -14.24172 -13.79314 -13.51599 -13.19222 -13.05400 -12.89731 -12.65617 -12.27789 -12.25303 -12.17389 -12.07134 -11.83196 -11.55069 -11.41834 -11.29620 -11.09930 -10.79726 -10.75457 -10.53093 -10.12753 -9.64670 -9.33226 -8.99445 -8.63715 -8.59842 -8.39578 -7.70839 -6.14867 -4.15219 1.50631 1.56209 3.23037 3.28905 3.36938 3.40008 3.71847 4.03890 4.35234 4.70183 4.83935 4.95938 5.10832 5.19558 5.22255 5.27232 5.35768 5.41440 5.50843 5.58838 5.68419 5.73513 5.77964 5.87919 5.91879 5.96324 6.17026 6.18289 6.22869 6.26305 6.28599 6.37974 6.49611 6.64491 6.68077 6.82485 6.84664 7.11459 7.18766 7.35917 7.63506 8.19725 8.48041 8.85142 8.93654 9.46603 10.97888 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027016 B = 0.004537 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.163990 B = 6169.918184 C = 6330.541552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.096 4.096 3 C -0.126 4.126 4 C -0.119 4.119 5 C -0.086 4.086 6 C -0.054 4.054 7 C -0.072 4.072 8 H 0.097 0.903 9 C -0.152 4.152 10 C 0.511 3.489 11 O -0.544 6.544 12 N -0.587 5.587 13 C 0.084 3.916 14 C 0.229 3.771 15 H 0.062 0.938 16 C -0.161 4.161 17 C -0.526 4.526 18 H 0.078 0.922 19 C 0.075 3.925 20 N -0.896 5.896 21 Si 0.883 3.117 22 H -0.277 1.277 23 H -0.294 1.294 24 H -0.264 1.264 25 C -0.116 4.116 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.032 0.968 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.265 0.735 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.988 3.338 -8.278 19.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.096 4.096 3 C -0.144 4.144 4 C -0.137 4.137 5 C -0.104 4.104 6 C -0.054 4.054 7 C -0.093 4.093 8 H 0.115 0.885 9 C -0.209 4.209 10 C 0.297 3.703 11 O -0.422 6.422 12 N -0.317 5.317 13 C -0.059 4.059 14 C 0.127 3.873 15 H 0.080 0.920 16 C -0.219 4.219 17 C -0.564 4.564 18 H 0.096 0.904 19 C -0.127 4.127 20 N -0.533 5.533 21 Si 0.713 3.287 22 H -0.204 1.204 23 H -0.221 1.221 24 H -0.188 1.188 25 C -0.134 4.134 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.134 0.866 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.772 3.783 -7.781 18.872 hybrid contribution 0.080 -0.179 1.031 1.050 sum -16.692 3.604 -6.749 18.362 Atomic orbital electron populations 1.20741 0.91527 1.02515 1.01905 1.19778 0.95705 0.93160 1.00926 1.20943 0.94265 0.97183 1.01989 1.21081 0.94182 0.97941 1.00483 1.20962 1.00140 0.91718 0.97542 1.19360 0.93084 0.93963 0.98996 1.20293 0.97398 0.96290 0.95351 0.88502 1.22047 0.99526 1.04151 0.95195 1.20257 0.80618 0.82474 0.86920 1.90664 1.66932 1.37520 1.47074 1.47815 1.42043 1.17552 1.24330 1.21753 1.00096 0.91081 0.92978 1.19281 0.89898 0.95377 0.82727 0.92018 1.22461 0.98579 1.00835 1.00055 1.21157 0.88204 1.51438 0.95616 0.90359 1.24863 0.94790 0.94253 0.98823 1.69879 0.99600 1.49745 1.34086 0.86924 0.78039 0.78195 0.85585 1.20416 1.22150 1.18842 1.20835 0.93242 0.97445 1.01839 0.91524 0.91767 0.91817 0.86585 0.86286 0.86130 0.91916 0.91862 0.90251 0.92407 0.90954 0.92510 0.94859 0.92529 0.93179 0.92463 0.86460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.01 36.00 0.36 -0.63 16 2 C -0.10 -1.18 5.88 -104.62 -0.62 -1.79 16 3 C -0.13 -1.57 9.70 -39.58 -0.38 -1.95 16 4 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 5 C -0.09 -1.35 7.93 -39.58 -0.31 -1.66 16 6 C -0.05 -0.81 4.40 -104.62 -0.46 -1.27 16 7 C -0.07 -1.07 2.10 -92.92 -0.20 -1.26 16 8 H 0.10 1.21 7.14 -51.93 -0.37 0.84 16 9 C -0.15 -1.97 8.64 37.16 0.32 -1.65 16 10 C 0.51 10.18 6.95 -10.98 -0.08 10.11 16 11 O -0.54 -12.99 14.44 5.55 0.08 -12.91 16 12 N -0.59 -11.93 2.75 -175.27 -0.48 -12.41 16 13 C 0.08 1.34 8.04 59.84 0.48 1.82 16 14 C 0.23 5.54 2.23 -69.08 -0.15 5.39 16 15 H 0.06 1.68 5.96 -51.93 -0.31 1.37 16 16 C -0.16 -3.49 8.65 37.16 0.32 -3.16 16 17 C -0.53 -14.50 8.95 -34.44 -0.31 -14.81 16 18 H 0.08 2.31 7.89 -52.49 -0.41 1.90 16 19 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 20 N -0.90 -26.94 13.96 55.43 0.77 -26.17 16 21 Si 0.88 21.99 24.37 -169.99 -4.14 17.85 16 22 H -0.28 -6.59 6.87 56.52 0.39 -6.20 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 24 H -0.26 -6.54 6.53 56.52 0.37 -6.17 16 25 C -0.12 -1.54 9.33 -39.58 -0.37 -1.91 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 28 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 29 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 30 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.12 2.02 7.52 -52.49 -0.39 1.63 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.90 7.39 -51.93 -0.38 0.52 16 34 H 0.08 0.99 4.51 -51.93 -0.23 0.75 16 35 H 0.06 0.92 6.94 -51.93 -0.36 0.56 16 36 H 0.07 1.14 6.43 -51.93 -0.33 0.81 16 37 H 0.06 0.69 6.02 -51.93 -0.31 0.38 16 38 H 0.03 0.65 8.14 -51.92 -0.42 0.22 16 39 H 0.06 1.12 6.66 -51.93 -0.35 0.78 16 40 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 41 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.12 1.32 7.95 -52.49 -0.42 0.90 16 LS Contribution 327.02 15.07 4.93 4.93 Total: -1.00 -32.85 327.02 -6.91 -39.77 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.18 Total: 1.73 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -1.89 Total: -12.78 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.29 Total: -38.58 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.08 Total: -12.91 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.14 Total: 17.85 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.85 -6.91 -39.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121250784.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.672 kcal (2) G-P(sol) polarization free energy of solvation -32.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds