Wall clock time and date at job start Mon Mar 30 2020 02:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38260 * 120.00491 * 2 1 4 4 C 1.38213 * 120.00392 * 180.02562 * 3 2 1 5 5 C 1.38257 * 119.99830 * 0.02562 * 4 3 2 6 6 C 1.38210 * 120.00028 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.00101 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47035 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.46747 * 300.00139 * 7 6 5 10 10 C 1.50700 * 109.47148 * 59.99888 * 7 6 5 11 11 O 1.21283 * 119.99803 * 0.02562 * 10 7 6 12 12 N 1.34777 * 119.99675 * 180.28037 * 10 7 6 13 13 C 1.46496 * 120.00345 * 359.72090 * 12 10 7 14 14 C 1.46497 * 119.99525 * 179.72583 * 12 10 7 15 15 H 1.08996 * 109.47805 * 359.97438 * 14 12 10 16 16 C 1.53007 * 109.47236 * 119.99976 * 14 12 10 17 17 C 1.50701 * 109.47153 * 239.99364 * 14 12 10 18 18 H 1.08001 * 119.99776 * 0.02562 * 17 14 12 19 19 C 1.37877 * 119.99923 * 179.97438 * 17 14 12 20 20 N 1.31524 * 119.99613 * 180.02562 * 19 17 14 21 21 Si 1.86795 * 120.00191 * 0.02562 * 19 17 14 22 22 H 1.48500 * 109.47212 * 89.99993 * 21 19 17 23 23 H 1.48504 * 109.46936 * 209.99975 * 21 19 17 24 24 H 1.48501 * 109.47226 * 329.99389 * 21 19 17 25 25 C 1.38214 * 119.99987 * 180.27638 * 2 1 3 26 26 H 1.09006 * 109.47043 * 89.99691 * 1 2 3 27 27 H 1.08995 * 109.47542 * 210.00063 * 1 2 3 28 28 H 1.09004 * 109.46747 * 330.00176 * 1 2 3 29 29 H 1.08002 * 119.99242 * 0.02562 * 3 2 1 30 30 H 1.07995 * 120.00001 * 179.97438 * 4 3 2 31 31 H 1.07998 * 119.99974 * 179.97438 * 5 4 3 32 32 H 1.09005 * 109.47323 * 300.00123 * 9 7 6 33 33 H 1.09006 * 109.47458 * 59.99773 * 9 7 6 34 34 H 1.09004 * 109.47239 * 179.97438 * 9 7 6 35 35 H 1.08997 * 109.47115 * 90.00316 * 13 12 10 36 36 H 1.08995 * 109.47364 * 210.00706 * 13 12 10 37 37 H 1.09002 * 109.47090 * 330.00257 * 13 12 10 38 38 H 1.09011 * 109.46614 * 299.99781 * 16 14 12 39 39 H 1.08996 * 109.46839 * 59.99267 * 16 14 12 40 40 H 1.08995 * 109.47124 * 180.02562 * 16 14 12 41 41 H 0.97000 * 119.99467 * 179.97438 * 20 19 17 42 42 H 1.08002 * 119.99796 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0016 6 6 3.5806 -1.1970 -0.0016 7 6 4.3341 -2.5022 -0.0034 8 1 3.6257 -3.3306 -0.0035 9 6 5.2122 -2.5823 -1.2537 10 6 5.2019 -2.5829 1.2260 11 8 5.2076 -1.6706 2.0252 12 7 5.9755 -3.6666 1.4348 13 6 5.9682 -4.7688 0.4697 14 6 6.8237 -3.7424 2.6268 15 1 6.6968 -2.8376 3.2212 16 6 6.4237 -4.9612 3.4608 17 6 8.2661 -3.8707 2.2097 18 1 8.5252 -3.8931 1.1615 19 6 9.2552 -3.9584 3.1663 20 7 10.5141 -4.0698 2.8022 21 14 8.8072 -3.9189 4.9793 22 1 8.5650 -5.3030 5.4596 23 1 9.9226 -3.3150 5.7517 24 1 7.5781 -3.1072 5.1680 25 6 2.1980 -1.1970 -0.0058 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6583 2.1326 0.0004 30 1 4.1205 2.1325 -0.0010 31 1 5.3517 -0.0001 -0.0024 32 1 4.5845 -2.5239 -2.1429 33 1 5.9206 -1.7538 -1.2540 34 1 5.7576 -3.5261 -1.2548 35 1 6.7332 -4.5944 -0.2868 36 1 6.1753 -5.7057 0.9867 37 1 4.9905 -4.8262 -0.0087 38 1 5.3803 -4.8685 3.7625 39 1 6.5509 -5.8658 2.8661 40 1 7.0545 -5.0173 4.3479 41 1 11.2099 -4.1312 3.4752 42 1 1.6580 -2.1322 -0.0107 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121250784.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:52 Heat of formation + Delta-G solvation = -28.289585 kcal Electronic energy + Delta-G solvation = -21638.321305 eV Core-core repulsion = 18582.620808 eV Total energy + Delta-G solvation = -3055.700497 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.43168 -39.88547 -37.27469 -35.69247 -34.59681 -33.20364 -32.19240 -30.32160 -27.84828 -27.62748 -27.18753 -25.61718 -23.64941 -22.89001 -21.36304 -19.70337 -18.91713 -17.92878 -17.39597 -17.37376 -16.43906 -16.33477 -15.82074 -15.56774 -15.04676 -14.71175 -14.57569 -14.47327 -14.13530 -14.05690 -13.89137 -13.53833 -13.41163 -13.31477 -13.00810 -12.96873 -12.86315 -12.61801 -12.47090 -12.25159 -12.07226 -11.82228 -11.69076 -11.59644 -11.33255 -10.81199 -10.54100 -9.66915 -9.41987 -9.37537 -8.36596 -6.40572 0.46132 0.53541 1.23506 1.33538 1.42027 1.76012 2.25855 2.29406 2.90922 2.98845 3.58168 3.73393 3.98303 4.07067 4.20819 4.24912 4.31271 4.41454 4.43921 4.55981 4.56635 4.60113 4.62833 4.73480 4.76751 4.83047 4.89412 4.90392 4.99633 5.02893 5.06789 5.20623 5.28197 5.32649 5.35560 5.48586 5.60469 5.70497 5.72750 5.76556 6.16581 6.20772 6.61335 6.75515 7.21188 7.39561 8.79478 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027016 B = 0.004537 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.163990 B = 6169.918184 C = 6330.541552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.097 4.097 3 C -0.129 4.129 4 C -0.131 4.131 5 C -0.115 4.115 6 C -0.072 4.072 7 C -0.060 4.060 8 H 0.132 0.868 9 C -0.147 4.147 10 C 0.502 3.498 11 O -0.593 6.593 12 N -0.594 5.594 13 C 0.079 3.921 14 C 0.231 3.769 15 H 0.026 0.974 16 C -0.153 4.153 17 C -0.524 4.524 18 H 0.046 0.954 19 C 0.023 3.977 20 N -0.939 5.939 21 Si 0.940 3.060 22 H -0.252 1.252 23 H -0.296 1.296 24 H -0.266 1.266 25 C -0.121 4.121 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.143 0.857 30 H 0.129 0.871 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.038 0.962 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.040 0.960 41 H 0.268 0.732 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.410 2.377 -8.634 22.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.149 4.149 5 C -0.133 4.133 6 C -0.072 4.072 7 C -0.081 4.081 8 H 0.150 0.850 9 C -0.204 4.204 10 C 0.291 3.709 11 O -0.474 6.474 12 N -0.324 5.324 13 C -0.063 4.063 14 C 0.127 3.873 15 H 0.044 0.956 16 C -0.211 4.211 17 C -0.562 4.562 18 H 0.064 0.936 19 C -0.175 4.175 20 N -0.579 5.579 21 Si 0.768 3.232 22 H -0.177 1.177 23 H -0.224 1.224 24 H -0.191 1.191 25 C -0.139 4.139 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.161 0.839 30 H 0.147 0.853 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.057 0.943 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.121 0.879 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.059 0.941 41 H 0.077 0.923 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -20.212 2.790 -8.169 21.978 hybrid contribution 1.130 0.212 1.042 1.551 sum -19.083 3.002 -7.127 20.590 Atomic orbital electron populations 1.20804 0.88835 1.03531 1.03280 1.20251 0.97689 0.92644 0.99094 1.21300 0.93659 0.98733 1.00994 1.21298 0.95284 0.97732 1.00541 1.20932 0.99059 0.93382 0.99973 1.19489 0.94152 0.93526 1.00047 1.20302 0.97115 0.97666 0.92974 0.85041 1.22041 0.99379 1.03428 0.95593 1.21236 0.80548 0.81276 0.87865 1.90631 1.68528 1.39107 1.49126 1.47887 1.41362 1.19072 1.24079 1.22030 1.02683 0.89478 0.92093 1.18938 0.88706 0.95154 0.84495 0.95575 1.22309 0.99625 0.99893 0.99289 1.21366 0.90451 1.50293 0.94124 0.93603 1.25624 0.94611 0.94132 1.03159 1.70004 1.00710 1.51566 1.35578 0.85993 0.77337 0.79384 0.80535 1.17688 1.22351 1.19131 1.21149 0.92427 0.99091 1.01243 0.89824 0.90881 0.90753 0.83942 0.85266 0.88954 0.88904 0.94288 0.89638 0.92888 0.90734 0.87884 0.92628 0.90775 0.94113 0.92283 0.83949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 10.01 71.23 0.71 -0.81 16 2 C -0.10 -2.11 5.88 -19.87 -0.12 -2.23 16 3 C -0.13 -2.97 9.70 22.27 0.22 -2.75 16 4 C -0.13 -3.60 10.05 22.27 0.22 -3.37 16 5 C -0.12 -3.75 7.93 22.27 0.18 -3.58 16 6 C -0.07 -2.11 4.40 -19.86 -0.09 -2.20 16 7 C -0.06 -1.68 2.10 -12.29 -0.03 -1.71 16 8 H 0.13 2.77 7.14 -2.39 -0.02 2.75 16 9 C -0.15 -3.64 8.64 71.98 0.62 -3.02 16 10 C 0.50 20.06 6.95 87.66 0.61 20.67 16 11 O -0.59 -29.31 14.44 -3.04 -0.04 -29.36 16 12 N -0.59 -23.98 2.75 -826.81 -2.28 -26.25 16 13 C 0.08 2.36 8.04 127.77 1.03 3.39 16 14 C 0.23 11.25 2.23 44.25 0.10 11.35 16 15 H 0.03 1.47 5.96 -2.39 -0.01 1.46 16 16 C -0.15 -6.37 8.65 71.98 0.62 -5.75 16 17 C -0.52 -29.72 8.95 25.60 0.23 -29.49 16 18 H 0.05 2.83 7.89 -2.91 -0.02 2.80 16 19 C 0.02 1.36 5.45 84.65 0.46 1.83 16 20 N -0.94 -58.05 13.96 21.45 0.30 -57.76 16 21 Si 0.94 45.82 24.37 68.60 1.67 47.49 16 22 H -0.25 -11.17 6.87 99.48 0.68 -10.48 16 23 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 24 H -0.27 -13.00 6.53 99.48 0.65 -12.35 16 25 C -0.12 -2.92 9.33 22.27 0.21 -2.71 16 26 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 28 H 0.07 0.91 8.09 -2.38 -0.02 0.89 16 29 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 30 H 0.13 3.09 8.06 -2.91 -0.02 3.07 16 31 H 0.09 3.40 7.52 -2.91 -0.02 3.38 16 32 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.04 1.14 7.39 -2.38 -0.02 1.12 16 34 H 0.09 1.98 4.51 -2.38 -0.01 1.97 16 35 H 0.05 1.64 6.94 -2.39 -0.02 1.62 16 36 H 0.07 2.20 6.43 -2.39 -0.02 2.18 16 37 H 0.10 2.11 6.02 -2.39 -0.01 2.09 16 38 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.07 2.78 6.66 -2.39 -0.02 2.77 16 40 H 0.04 1.76 3.27 -2.39 -0.01 1.75 16 41 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 42 H 0.14 2.61 7.95 -2.91 -0.02 2.59 16 Total: -1.00 -75.11 327.02 5.56 -69.55 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.93 Total: 16.69 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: 4.98 Total: -20.37 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -1.98 Total: -84.01 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.04 Total: -29.36 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.67 Total: 47.49 kcal Total: -75.11 5.56 -69.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121250784.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.262 kcal (2) G-P(sol) polarization free energy of solvation -75.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds