Wall clock time and date at job start Mon Mar 30 2020 02:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38260 * 120.00126 * 2 1 4 4 C 1.38205 * 120.00087 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99909 * 359.74430 * 4 3 2 6 6 C 1.38211 * 119.99994 * 0.51187 * 5 4 3 7 7 C 1.50702 * 119.99820 * 179.77053 * 6 5 4 8 8 H 1.09007 * 109.46664 * 179.72805 * 7 6 5 9 9 C 1.52994 * 109.47472 * 59.72147 * 7 6 5 10 10 C 1.50703 * 109.46912 * 299.71990 * 7 6 5 11 11 O 1.21278 * 119.99829 * 10.29502 * 10 7 6 12 12 N 1.34775 * 120.00051 * 190.29322 * 10 7 6 13 13 C 1.46497 * 119.99990 * 184.22855 * 12 10 7 14 14 C 1.46496 * 120.00042 * 4.23581 * 12 10 7 15 15 H 1.09000 * 109.47059 * 354.10826 * 14 12 10 16 16 C 1.53004 * 109.47397 * 114.10916 * 14 12 10 17 17 C 1.50701 * 109.46967 * 234.11164 * 14 12 10 18 18 H 1.07997 * 120.00365 * 0.02562 * 17 14 12 19 19 C 1.37875 * 119.99970 * 179.97438 * 17 14 12 20 20 N 1.31518 * 120.00227 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 120.00235 * 180.02562 * 19 17 14 22 22 H 1.48493 * 109.47257 * 90.00003 * 21 19 17 23 23 H 1.48500 * 109.47329 * 210.00347 * 21 19 17 24 24 H 1.48504 * 109.46922 * 330.00214 * 21 19 17 25 25 C 1.38215 * 119.99941 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.46811 * 270.02032 * 1 2 3 27 27 H 1.08997 * 109.47217 * 30.02329 * 1 2 3 28 28 H 1.09007 * 109.46993 * 150.02114 * 1 2 3 29 29 H 1.08000 * 119.99731 * 0.02562 * 3 2 1 30 30 H 1.08001 * 119.99841 * 180.02562 * 4 3 2 31 31 H 1.08001 * 120.00035 * 180.28112 * 5 4 3 32 32 H 1.09003 * 109.47087 * 57.80581 * 9 7 6 33 33 H 1.08998 * 109.47356 * 177.80124 * 9 7 6 34 34 H 1.08998 * 109.47465 * 297.80371 * 9 7 6 35 35 H 1.09003 * 109.46740 * 95.07366 * 13 12 10 36 36 H 1.08999 * 109.47291 * 335.07533 * 13 12 10 37 37 H 1.09003 * 109.47191 * 215.07019 * 13 12 10 38 38 H 1.08995 * 109.46908 * 299.99992 * 16 14 12 39 39 H 1.09003 * 109.46568 * 60.00461 * 16 14 12 40 40 H 1.08998 * 109.46782 * 179.97438 * 16 14 12 41 41 H 0.97002 * 119.99947 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.00044 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0064 6 6 3.5806 -1.1970 0.0011 7 6 4.3342 -2.5020 0.0022 8 1 3.6258 -3.3306 0.0023 9 6 5.2132 -2.5823 1.2518 10 6 5.2011 -2.5826 -1.2278 11 8 5.3527 -1.6040 -1.9279 12 7 5.8079 -3.7422 -1.5498 13 6 6.7237 -3.7971 -2.6920 14 6 5.5516 -4.9476 -0.7579 15 1 4.9339 -4.6921 0.1031 16 6 4.8221 -5.9793 -1.6207 17 6 6.8604 -5.5247 -0.2835 18 1 7.7901 -5.0417 -0.5454 19 6 6.8709 -6.6689 0.4857 20 7 5.7387 -7.2570 0.8051 21 14 8.4931 -7.3839 1.0743 22 1 8.8455 -6.7940 2.3906 23 1 8.3644 -8.8570 1.2105 24 1 9.5591 -7.0691 0.0895 25 6 2.1981 -1.1970 0.0005 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6583 2.1326 0.0004 30 1 4.1204 2.1327 0.0010 31 1 5.3517 0.0000 0.0114 32 1 4.5904 -2.4849 2.1411 33 1 5.7284 -3.5427 1.2726 34 1 5.9471 -1.7767 1.2323 35 1 7.7475 -3.6607 -2.3436 36 1 6.4718 -3.0059 -3.3981 37 1 6.6333 -4.7656 -3.1839 38 1 3.8755 -5.5618 -1.9637 39 1 5.4399 -6.2348 -2.4816 40 1 4.6318 -6.8763 -1.0315 41 1 5.7461 -8.0622 1.3460 42 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121250939.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:56 Heat of formation + Delta-G solvation = -22.638429 kcal Electronic energy + Delta-G solvation = -21778.972601 eV Core-core repulsion = 18723.517156 eV Total energy + Delta-G solvation = -3055.455445 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.93474 -38.50652 -35.56035 -34.06294 -32.65582 -32.04527 -29.53655 -29.16606 -26.73649 -26.28105 -25.34684 -23.88929 -21.90360 -21.49507 -20.37281 -17.95747 -16.80910 -16.23829 -16.13956 -15.28354 -15.04877 -14.54077 -14.34582 -14.18203 -13.68403 -13.21573 -13.06983 -12.83932 -12.75244 -12.62592 -12.15465 -11.93264 -11.75306 -11.63131 -11.46191 -11.30595 -11.14388 -11.04917 -10.88827 -10.73232 -10.63684 -10.42661 -10.26211 -10.16278 -9.34952 -8.92720 -8.56859 -8.47165 -8.27540 -7.60598 -6.20398 -4.28579 1.63268 1.67886 3.20227 3.28001 3.30321 3.40751 3.87632 4.17196 4.31817 4.92661 4.99401 5.10110 5.12902 5.33162 5.42056 5.43387 5.60607 5.63318 5.74751 5.78284 5.87050 5.89812 6.10859 6.23415 6.27192 6.31325 6.36240 6.40724 6.47145 6.58447 6.70389 6.74362 6.78835 6.79366 6.96274 7.00604 7.17845 7.29042 7.41371 7.65149 7.82941 8.09468 8.46925 8.74292 9.02747 9.40042 10.84351 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025298 B = 0.004700 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.556880 B = 5956.566259 C = 6140.519744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.096 4.096 3 C -0.128 4.128 4 C -0.123 4.123 5 C -0.083 4.083 6 C -0.053 4.053 7 C -0.069 4.069 8 H 0.099 0.901 9 C -0.144 4.144 10 C 0.515 3.485 11 O -0.568 6.568 12 N -0.591 5.591 13 C 0.097 3.903 14 C 0.249 3.751 15 H 0.060 0.940 16 C -0.153 4.153 17 C -0.527 4.527 18 H 0.062 0.938 19 C 0.067 3.933 20 N -0.888 5.888 21 Si 0.897 3.103 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.115 4.115 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.011 0.989 39 H 0.032 0.968 40 H 0.095 0.905 41 H 0.264 0.736 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.500 9.737 0.229 11.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.141 4.141 5 C -0.101 4.101 6 C -0.053 4.053 7 C -0.090 4.090 8 H 0.118 0.882 9 C -0.201 4.201 10 C 0.302 3.698 11 O -0.449 6.449 12 N -0.321 5.321 13 C -0.046 4.046 14 C 0.148 3.852 15 H 0.077 0.923 16 C -0.211 4.211 17 C -0.566 4.566 18 H 0.080 0.920 19 C -0.135 4.135 20 N -0.526 5.526 21 Si 0.725 3.275 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.133 4.133 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.030 0.970 39 H 0.051 0.949 40 H 0.113 0.887 41 H 0.074 0.926 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.476 10.033 -0.041 11.941 hybrid contribution 0.946 -0.659 0.298 1.191 sum -5.530 9.374 0.256 10.886 Atomic orbital electron populations 1.20742 0.91573 1.02426 1.01940 1.19780 0.95691 0.93147 1.01025 1.20906 0.94251 0.97083 1.02367 1.21051 0.94180 0.97815 1.01078 1.20936 1.00000 0.91610 0.97588 1.19507 0.93130 0.94265 0.98434 1.20232 0.97654 0.95830 0.95291 0.88246 1.21886 0.99065 1.04524 0.94648 1.20303 0.80455 0.82968 0.86055 1.90598 1.64823 1.36470 1.53048 1.48199 1.43051 1.10537 1.30286 1.21340 0.93033 1.01484 0.88781 1.19187 0.96610 0.79960 0.89450 0.92251 1.22147 0.96500 1.02677 0.99801 1.21300 0.92483 1.10123 1.32650 0.91967 1.24874 0.96607 0.96388 0.95660 1.69855 1.25261 1.20062 1.37383 0.86508 0.83614 0.78214 0.79209 1.20530 1.21119 1.19867 1.20913 0.93409 0.97542 1.01443 0.91515 0.91931 0.91716 0.86731 0.86523 0.86238 0.92199 0.88780 0.92772 0.93517 0.92142 0.91705 0.96951 0.94864 0.88688 0.92556 0.86277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.01 36.01 0.36 -0.77 16 2 C -0.10 -1.31 5.88 -104.62 -0.62 -1.93 16 3 C -0.13 -1.70 9.70 -39.59 -0.38 -2.08 16 4 C -0.12 -1.76 10.05 -39.59 -0.40 -2.16 16 5 C -0.08 -1.38 7.87 -39.58 -0.31 -1.69 16 6 C -0.05 -0.90 4.50 -104.63 -0.47 -1.37 16 7 C -0.07 -1.26 2.04 -92.92 -0.19 -1.44 16 8 H 0.10 1.79 6.87 -51.93 -0.36 1.44 16 9 C -0.14 -2.51 8.60 37.15 0.32 -2.19 16 10 C 0.51 10.78 6.86 -10.98 -0.08 10.70 16 11 O -0.57 -12.92 14.28 5.56 0.08 -12.84 16 12 N -0.59 -12.60 2.75 -175.26 -0.48 -13.08 16 13 C 0.10 1.90 9.62 59.85 0.58 2.47 16 14 C 0.25 5.66 1.77 -69.08 -0.12 5.53 16 15 H 0.06 1.39 4.43 -51.93 -0.23 1.16 16 16 C -0.15 -3.41 9.04 37.16 0.34 -3.08 16 17 C -0.53 -13.06 8.01 -34.44 -0.28 -13.34 16 18 H 0.06 1.57 7.18 -52.49 -0.38 1.20 16 19 C 0.07 1.69 5.30 -17.82 -0.09 1.60 16 20 N -0.89 -22.88 11.32 55.43 0.63 -22.25 16 21 Si 0.90 19.88 29.54 -169.99 -5.02 14.85 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 25 C -0.12 -1.76 9.33 -39.58 -0.37 -2.13 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 28 H 0.06 0.63 8.09 -51.92 -0.42 0.21 16 29 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.12 2.04 7.30 -52.49 -0.38 1.66 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.09 1.87 5.85 -51.93 -0.30 1.57 16 34 H 0.05 0.91 7.45 -51.93 -0.39 0.52 16 35 H 0.05 0.90 7.81 -51.93 -0.41 0.49 16 36 H 0.06 1.15 7.23 -51.93 -0.38 0.77 16 37 H 0.06 1.22 6.76 -51.93 -0.35 0.87 16 38 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.03 0.72 6.91 -51.93 -0.36 0.36 16 40 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 41 H 0.26 6.56 8.31 -40.82 -0.34 6.23 16 42 H 0.12 1.66 7.95 -52.49 -0.42 1.24 16 LS Contribution 334.61 15.07 5.04 5.04 Total: -1.00 -27.62 334.61 -7.82 -35.43 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -6.35 Total: 4.72 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -1.71 Total: -11.88 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.14 Total: -35.33 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.08 Total: -12.84 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.62 -7.82 -35.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121250939.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.796 kcal (2) G-P(sol) polarization free energy of solvation -27.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds