Wall clock time and date at job start Mon Mar 30 2020 02:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38260 * 120.00126 * 2 1 4 4 C 1.38205 * 120.00087 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99909 * 359.74430 * 4 3 2 6 6 C 1.38211 * 119.99994 * 0.51187 * 5 4 3 7 7 C 1.50702 * 119.99820 * 179.77053 * 6 5 4 8 8 H 1.09007 * 109.46664 * 179.72805 * 7 6 5 9 9 C 1.52994 * 109.47472 * 59.72147 * 7 6 5 10 10 C 1.50703 * 109.46912 * 299.71990 * 7 6 5 11 11 O 1.21278 * 119.99829 * 10.29502 * 10 7 6 12 12 N 1.34775 * 120.00051 * 190.29322 * 10 7 6 13 13 C 1.46497 * 119.99990 * 184.22855 * 12 10 7 14 14 C 1.46496 * 120.00042 * 4.23581 * 12 10 7 15 15 H 1.09000 * 109.47059 * 354.10826 * 14 12 10 16 16 C 1.53004 * 109.47397 * 114.10916 * 14 12 10 17 17 C 1.50701 * 109.46967 * 234.11164 * 14 12 10 18 18 H 1.07997 * 120.00365 * 0.02562 * 17 14 12 19 19 C 1.37875 * 119.99970 * 179.97438 * 17 14 12 20 20 N 1.31518 * 120.00227 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 120.00235 * 180.02562 * 19 17 14 22 22 H 1.48493 * 109.47257 * 90.00003 * 21 19 17 23 23 H 1.48500 * 109.47329 * 210.00347 * 21 19 17 24 24 H 1.48504 * 109.46922 * 330.00214 * 21 19 17 25 25 C 1.38215 * 119.99941 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.46811 * 270.02032 * 1 2 3 27 27 H 1.08997 * 109.47217 * 30.02329 * 1 2 3 28 28 H 1.09007 * 109.46993 * 150.02114 * 1 2 3 29 29 H 1.08000 * 119.99731 * 0.02562 * 3 2 1 30 30 H 1.08001 * 119.99841 * 180.02562 * 4 3 2 31 31 H 1.08001 * 120.00035 * 180.28112 * 5 4 3 32 32 H 1.09003 * 109.47087 * 57.80581 * 9 7 6 33 33 H 1.08998 * 109.47356 * 177.80124 * 9 7 6 34 34 H 1.08998 * 109.47465 * 297.80371 * 9 7 6 35 35 H 1.09003 * 109.46740 * 95.07366 * 13 12 10 36 36 H 1.08999 * 109.47291 * 335.07533 * 13 12 10 37 37 H 1.09003 * 109.47191 * 215.07019 * 13 12 10 38 38 H 1.08995 * 109.46908 * 299.99992 * 16 14 12 39 39 H 1.09003 * 109.46568 * 60.00461 * 16 14 12 40 40 H 1.08998 * 109.46782 * 179.97438 * 16 14 12 41 41 H 0.97002 * 119.99947 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.00044 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0064 6 6 3.5806 -1.1970 0.0011 7 6 4.3342 -2.5020 0.0022 8 1 3.6258 -3.3306 0.0023 9 6 5.2132 -2.5823 1.2518 10 6 5.2011 -2.5826 -1.2278 11 8 5.3527 -1.6040 -1.9279 12 7 5.8079 -3.7422 -1.5498 13 6 6.7237 -3.7971 -2.6920 14 6 5.5516 -4.9476 -0.7579 15 1 4.9339 -4.6921 0.1031 16 6 4.8221 -5.9793 -1.6207 17 6 6.8604 -5.5247 -0.2835 18 1 7.7901 -5.0417 -0.5454 19 6 6.8709 -6.6689 0.4857 20 7 5.7387 -7.2570 0.8051 21 14 8.4931 -7.3839 1.0743 22 1 8.8455 -6.7940 2.3906 23 1 8.3644 -8.8570 1.2105 24 1 9.5591 -7.0691 0.0895 25 6 2.1981 -1.1970 0.0005 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6583 2.1326 0.0004 30 1 4.1204 2.1327 0.0010 31 1 5.3517 0.0000 0.0114 32 1 4.5904 -2.4849 2.1411 33 1 5.7284 -3.5427 1.2726 34 1 5.9471 -1.7767 1.2323 35 1 7.7475 -3.6607 -2.3436 36 1 6.4718 -3.0059 -3.3981 37 1 6.6333 -4.7656 -3.1839 38 1 3.8755 -5.5618 -1.9637 39 1 5.4399 -6.2348 -2.4816 40 1 4.6318 -6.8763 -1.0315 41 1 5.7461 -8.0622 1.3460 42 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121250939.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:56 Heat of formation + Delta-G solvation = -35.181031 kcal Electronic energy + Delta-G solvation = -21779.516489 eV Core-core repulsion = 18723.517156 eV Total energy + Delta-G solvation = -3055.999333 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.40048 -39.83361 -37.32658 -35.39125 -34.52958 -33.11792 -31.01579 -30.74168 -28.03352 -27.56223 -27.25649 -25.30812 -23.28867 -22.94187 -21.72093 -19.55207 -18.53940 -17.89134 -17.39487 -16.90628 -16.52377 -16.08424 -15.86095 -15.50709 -14.87747 -14.66199 -14.41603 -14.38306 -14.17662 -13.86509 -13.44401 -13.33499 -13.26934 -12.99695 -12.96808 -12.82207 -12.73316 -12.56048 -12.51931 -12.35255 -12.14500 -11.97389 -11.80017 -11.68312 -11.18686 -10.60957 -10.45824 -9.65414 -9.39872 -9.35202 -8.12773 -6.26129 0.48284 0.55424 1.43604 1.47171 1.54483 1.74161 2.32852 2.48680 2.93759 3.16523 3.66882 3.73224 4.00891 4.09780 4.26049 4.27185 4.34058 4.51595 4.58776 4.63654 4.66510 4.70065 4.78929 4.89343 4.90582 4.92820 4.94786 4.97175 5.03920 5.06278 5.20539 5.29004 5.35679 5.41726 5.57852 5.63075 5.71736 5.77609 5.80289 5.95722 6.18958 6.22273 6.68596 6.85447 7.31644 7.47156 8.90797 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025298 B = 0.004700 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.556880 B = 5956.566259 C = 6140.519744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.097 4.097 3 C -0.126 4.126 4 C -0.126 4.126 5 C -0.106 4.106 6 C -0.073 4.073 7 C -0.062 4.062 8 H 0.098 0.902 9 C -0.134 4.134 10 C 0.510 3.490 11 O -0.588 6.588 12 N -0.597 5.597 13 C 0.097 3.903 14 C 0.254 3.746 15 H 0.053 0.947 16 C -0.143 4.143 17 C -0.536 4.536 18 H 0.052 0.948 19 C 0.031 3.969 20 N -0.907 5.907 21 Si 0.950 3.050 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.130 4.130 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.147 0.853 30 H 0.139 0.861 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.024 0.976 39 H 0.033 0.967 40 H 0.076 0.924 41 H 0.266 0.734 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.583 10.853 0.478 13.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.097 4.097 3 C -0.144 4.144 4 C -0.144 4.144 5 C -0.124 4.124 6 C -0.074 4.074 7 C -0.084 4.084 8 H 0.116 0.884 9 C -0.191 4.191 10 C 0.299 3.701 11 O -0.470 6.470 12 N -0.326 5.326 13 C -0.046 4.046 14 C 0.153 3.847 15 H 0.071 0.929 16 C -0.202 4.202 17 C -0.574 4.574 18 H 0.071 0.929 19 C -0.170 4.170 20 N -0.546 5.546 21 Si 0.776 3.224 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.199 1.199 25 C -0.148 4.148 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.165 0.835 30 H 0.157 0.843 31 H 0.122 0.878 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.043 0.957 39 H 0.052 0.948 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.557 11.149 0.204 13.470 hybrid contribution 1.247 -0.938 0.200 1.573 sum -6.310 10.211 0.404 12.010 Atomic orbital electron populations 1.20806 0.89014 1.03507 1.03179 1.20211 0.97604 0.92552 0.99313 1.21317 0.93920 0.98387 1.00788 1.21348 0.95050 0.97805 1.00200 1.20939 0.99449 0.92630 0.99377 1.19483 0.93945 0.93547 1.00397 1.20168 0.97242 0.96914 0.94034 0.88441 1.21764 0.99121 1.02878 0.95324 1.20789 0.80362 0.82383 0.86569 1.90573 1.65579 1.36952 1.53898 1.48251 1.43441 1.10369 1.30577 1.21390 0.92739 1.02009 0.88466 1.19014 0.95788 0.80377 0.89506 0.92896 1.22006 0.97085 1.01770 0.99343 1.21440 0.92856 1.10295 1.32850 0.92926 1.25446 0.99044 0.96702 0.95811 1.69940 1.26539 1.20314 1.37768 0.85678 0.80543 0.77519 0.78619 1.20366 1.20871 1.19880 1.21114 0.92844 0.98901 1.01905 0.90069 0.90166 0.91391 0.83495 0.84337 0.87838 0.90326 0.91413 0.92714 0.93575 0.91697 0.91050 0.95677 0.94775 0.90491 0.92499 0.85533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.87 10.01 71.24 0.71 -1.16 16 2 C -0.10 -2.39 5.88 -19.86 -0.12 -2.51 16 3 C -0.13 -2.98 9.70 22.27 0.22 -2.77 16 4 C -0.13 -3.39 10.05 22.27 0.22 -3.17 16 5 C -0.11 -3.49 7.87 22.27 0.18 -3.31 16 6 C -0.07 -2.48 4.50 -19.87 -0.09 -2.57 16 7 C -0.06 -2.30 2.04 -12.29 -0.03 -2.33 16 8 H 0.10 3.57 6.87 -2.38 -0.02 3.55 16 9 C -0.13 -4.74 8.60 71.98 0.62 -4.12 16 10 C 0.51 21.63 6.86 87.66 0.60 22.23 16 11 O -0.59 -27.00 14.28 -3.02 -0.04 -27.04 16 12 N -0.60 -25.67 2.75 -826.80 -2.28 -27.94 16 13 C 0.10 3.80 9.62 127.77 1.23 5.03 16 14 C 0.25 11.68 1.77 44.25 0.08 11.75 16 15 H 0.05 2.52 4.43 -2.39 -0.01 2.50 16 16 C -0.14 -6.41 9.04 71.98 0.65 -5.76 16 17 C -0.54 -26.73 8.01 25.60 0.21 -26.53 16 18 H 0.05 2.68 7.18 -2.91 -0.02 2.66 16 19 C 0.03 1.54 5.30 84.65 0.45 1.99 16 20 N -0.91 -46.84 11.32 21.45 0.24 -46.60 16 21 Si 0.95 40.63 29.54 68.60 2.03 42.66 16 22 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 C -0.13 -3.83 9.33 22.27 0.21 -3.62 16 26 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 28 H 0.07 1.14 8.09 -2.38 -0.02 1.12 16 29 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 30 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 31 H 0.10 3.64 7.30 -2.91 -0.02 3.62 16 32 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.07 2.76 5.85 -2.39 -0.01 2.75 16 34 H 0.05 1.89 7.45 -2.39 -0.02 1.87 16 35 H 0.05 1.79 7.81 -2.39 -0.02 1.77 16 36 H 0.06 2.46 7.23 -2.39 -0.02 2.45 16 37 H 0.07 2.66 6.76 -2.39 -0.02 2.65 16 38 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.03 1.47 6.91 -2.39 -0.02 1.45 16 40 H 0.08 3.75 6.07 -2.39 -0.01 3.73 16 41 H 0.27 13.15 8.31 -92.71 -0.77 12.38 16 42 H 0.13 3.41 7.95 -2.91 -0.02 3.39 16 Total: -1.00 -58.05 334.61 6.09 -51.96 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 1.00 Total: 23.79 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 5.14 Total: -16.83 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: -2.03 Total: -74.54 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.04 Total: -27.04 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Total: -58.05 6.09 -51.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121250939.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.783 kcal (2) G-P(sol) polarization free energy of solvation -58.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds