Wall clock time and date at job start Mon Mar 30 2020 02:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38258 * 120.00010 * 2 1 4 4 C 1.38212 * 120.00085 * 180.28042 * 3 2 1 5 5 C 1.38260 * 120.00041 * 359.73665 * 4 3 2 6 6 C 1.38214 * 119.99662 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.99514 * 179.97438 * 6 5 4 8 8 H 1.09007 * 109.46446 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47061 * 300.01560 * 7 6 5 10 10 C 1.50696 * 109.47358 * 60.02270 * 7 6 5 11 11 O 1.21277 * 120.00047 * 359.97438 * 10 7 6 12 12 N 1.34773 * 119.99897 * 179.97438 * 10 7 6 13 13 C 1.46502 * 120.00006 * 359.97438 * 12 10 7 14 14 C 1.46496 * 120.00383 * 179.97438 * 12 10 7 15 15 H 1.08997 * 109.46829 * 359.97438 * 14 12 10 16 16 C 1.52998 * 109.47556 * 240.00383 * 14 12 10 17 17 C 1.50700 * 109.47345 * 119.99942 * 14 12 10 18 18 H 1.07997 * 120.00042 * 359.97438 * 17 14 12 19 19 C 1.37884 * 119.99803 * 180.02562 * 17 14 12 20 20 N 1.31508 * 120.00235 * 359.97438 * 19 17 14 21 21 Si 1.86802 * 119.99784 * 179.97438 * 19 17 14 22 22 H 1.48504 * 109.47230 * 59.99626 * 21 19 17 23 23 H 1.48498 * 109.46946 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46981 * 299.99843 * 21 19 17 25 25 C 1.38211 * 120.00162 * 179.75882 * 2 1 3 26 26 H 1.09001 * 109.47236 * 270.23378 * 1 2 3 27 27 H 1.09000 * 109.47285 * 30.23570 * 1 2 3 28 28 H 1.08993 * 109.47149 * 150.24066 * 1 2 3 29 29 H 1.08004 * 120.00376 * 359.97438 * 3 2 1 30 30 H 1.08001 * 120.00378 * 179.72174 * 4 3 2 31 31 H 1.07997 * 119.99889 * 179.97438 * 5 4 3 32 32 H 1.09005 * 109.46522 * 60.00598 * 9 7 6 33 33 H 1.08998 * 109.47162 * 180.02562 * 9 7 6 34 34 H 1.08997 * 109.47094 * 300.01037 * 9 7 6 35 35 H 1.08998 * 109.47387 * 89.99975 * 13 12 10 36 36 H 1.09002 * 109.47284 * 209.99921 * 13 12 10 37 37 H 1.09001 * 109.47285 * 329.99888 * 13 12 10 38 38 H 1.09008 * 109.46996 * 299.99780 * 16 14 12 39 39 H 1.08996 * 109.47651 * 59.99283 * 16 14 12 40 40 H 1.08997 * 109.47678 * 180.02562 * 16 14 12 41 41 H 0.97005 * 120.00102 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.00200 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 -0.0059 5 6 4.2717 0.0000 -0.0062 6 6 3.5806 -1.1969 -0.0012 7 6 4.3342 -2.5020 -0.0022 8 1 3.6257 -3.3305 0.0017 9 6 5.2088 -2.5849 -1.2549 10 6 5.2053 -2.5800 1.2249 11 8 5.2139 -1.6657 2.0216 12 7 5.9750 -3.6658 1.4370 13 6 5.9642 -4.7706 0.4749 14 6 6.8223 -3.7415 2.6296 15 1 6.6984 -2.8347 3.2215 16 6 8.2865 -3.8780 2.2073 17 6 6.4237 -4.9384 3.4540 18 1 5.6193 -5.5784 3.1230 19 6 7.0853 -5.2157 4.6316 20 7 8.0645 -4.4360 5.0350 21 14 6.5907 -6.6989 5.6538 22 1 6.7599 -7.9345 4.8476 23 1 7.4498 -6.7756 6.8626 24 1 5.1695 -6.5660 6.0635 25 6 2.1980 -1.1969 0.0050 26 1 -0.3634 0.0042 1.0277 27 1 -0.3634 0.8878 -0.5175 28 1 -0.3633 -0.8921 -0.5101 29 1 1.6583 2.1327 -0.0004 30 1 4.1204 2.1327 -0.0104 31 1 5.3516 0.0001 -0.0112 32 1 5.9171 -1.7564 -1.2588 33 1 5.7535 -3.5291 -1.2558 34 1 4.5786 -2.5284 -2.1424 35 1 6.7302 -4.6010 -0.2818 36 1 6.1678 -5.7069 0.9945 37 1 4.9865 -4.8259 -0.0039 38 1 8.4109 -4.7847 1.6151 39 1 8.5749 -3.0123 1.6110 40 1 8.9169 -3.9347 3.0946 41 1 8.5302 -4.6314 5.8632 42 1 1.6581 -2.1323 0.0086 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121251060.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:00 Heat of formation + Delta-G solvation = -17.546462 kcal Electronic energy + Delta-G solvation = -21562.991823 eV Core-core repulsion = 18507.757182 eV Total energy + Delta-G solvation = -3055.234640 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.98748 -38.52685 -35.34342 -34.31768 -32.80386 -32.04657 -29.97757 -28.73473 -26.71944 -26.28975 -25.20645 -24.28848 -22.17987 -21.64213 -19.92997 -18.10854 -16.61259 -16.47294 -16.10477 -15.47971 -15.01848 -14.71228 -14.42127 -14.11804 -13.71031 -13.46178 -13.06701 -12.92856 -12.77597 -12.49758 -12.22233 -12.08309 -12.05687 -11.68524 -11.51903 -11.36794 -11.15904 -11.03513 -10.85578 -10.75831 -10.72336 -10.48740 -10.24227 -10.15179 -9.18044 -8.88603 -8.54579 -8.39607 -8.35008 -7.54994 -6.06007 -4.14054 1.55563 1.60632 3.28150 3.33461 3.34596 3.44356 3.83309 4.13422 4.41533 4.75853 4.89882 5.00565 5.19726 5.24944 5.26283 5.33476 5.38762 5.46762 5.58141 5.62695 5.72379 5.79750 5.82980 5.89160 5.92173 6.05015 6.17948 6.22420 6.30819 6.42966 6.67859 6.71930 6.76983 6.84776 6.87316 7.08396 7.21275 7.45702 7.56176 7.73329 8.03699 8.22006 8.56633 8.84974 9.10646 9.52437 10.99213 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023940 B = 0.004429 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.320567 B = 6319.855784 C = 6601.737018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.095 4.095 3 C -0.126 4.126 4 C -0.120 4.120 5 C -0.086 4.086 6 C -0.052 4.052 7 C -0.075 4.075 8 H 0.097 0.903 9 C -0.150 4.150 10 C 0.508 3.492 11 O -0.544 6.544 12 N -0.592 5.592 13 C 0.082 3.918 14 C 0.258 3.742 15 H 0.062 0.938 16 C -0.145 4.145 17 C -0.526 4.526 18 H 0.058 0.942 19 C 0.065 3.935 20 N -0.888 5.888 21 Si 0.898 3.102 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 C -0.115 4.115 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.029 0.971 39 H 0.010 0.990 40 H 0.092 0.908 41 H 0.264 0.736 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.315 4.979 -13.773 17.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.095 4.095 3 C -0.144 4.144 4 C -0.138 4.138 5 C -0.104 4.104 6 C -0.052 4.052 7 C -0.096 4.096 8 H 0.115 0.885 9 C -0.207 4.207 10 C 0.294 3.706 11 O -0.422 6.422 12 N -0.323 5.323 13 C -0.062 4.062 14 C 0.158 3.842 15 H 0.080 0.920 16 C -0.204 4.204 17 C -0.565 4.565 18 H 0.077 0.923 19 C -0.137 4.137 20 N -0.526 5.526 21 Si 0.726 3.274 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.203 1.203 25 C -0.133 4.133 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.048 0.952 39 H 0.029 0.971 40 H 0.111 0.889 41 H 0.074 0.926 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.145 5.462 -13.173 16.941 hybrid contribution -0.172 -0.954 0.669 1.178 sum -9.317 4.508 -12.504 16.232 Atomic orbital electron populations 1.20743 0.91528 1.02289 1.02156 1.19780 0.95724 0.93157 1.00822 1.20928 0.94256 0.97160 1.02088 1.21061 0.94205 0.97860 1.00661 1.20907 0.99907 0.91738 0.97898 1.19367 0.93120 0.93983 0.98730 1.20324 0.97564 0.96283 0.95469 0.88510 1.22025 0.99572 1.03661 0.95462 1.20202 0.80798 0.82843 0.86712 1.90665 1.66556 1.37936 1.47012 1.48182 1.43019 1.16404 1.24689 1.21742 0.99783 0.92169 0.92518 1.18914 0.85696 0.98868 0.80715 0.91978 1.22074 1.00062 0.96836 1.01399 1.21287 1.17996 1.10963 1.06249 0.92346 1.24890 0.94873 0.96768 0.97214 1.69869 1.22276 1.37720 1.22709 0.86562 0.78553 0.82715 0.79587 1.20238 1.21167 1.20271 1.20854 0.93312 0.97486 1.01626 0.91385 0.91881 0.91795 0.86606 0.86366 0.86355 0.92155 0.90458 0.91973 0.93590 0.90259 0.92662 0.95212 0.97086 0.88904 0.92649 0.86418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.01 36.00 0.36 -0.71 16 2 C -0.09 -1.23 5.88 -104.63 -0.62 -1.85 16 3 C -0.13 -1.63 9.70 -39.58 -0.38 -2.01 16 4 C -0.12 -1.67 10.05 -39.58 -0.40 -2.07 16 5 C -0.09 -1.38 7.93 -39.58 -0.31 -1.69 16 6 C -0.05 -0.81 4.40 -104.62 -0.46 -1.27 16 7 C -0.07 -1.17 2.10 -92.92 -0.19 -1.36 16 8 H 0.10 1.35 7.13 -51.93 -0.37 0.98 16 9 C -0.15 -1.89 8.64 37.16 0.32 -1.57 16 10 C 0.51 10.63 6.95 -10.99 -0.08 10.55 16 11 O -0.54 -13.64 14.44 5.56 0.08 -13.56 16 12 N -0.59 -12.60 2.75 -175.27 -0.48 -13.08 16 13 C 0.08 1.35 7.80 59.85 0.47 1.82 16 14 C 0.26 6.64 2.64 -69.09 -0.18 6.46 16 15 H 0.06 1.87 6.90 -51.93 -0.36 1.51 16 16 C -0.15 -3.49 8.97 37.16 0.33 -3.16 16 17 C -0.53 -14.28 7.99 -34.44 -0.28 -14.56 16 18 H 0.06 1.55 7.33 -52.49 -0.38 1.17 16 19 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 20 N -0.89 -25.28 11.32 55.43 0.63 -24.66 16 21 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C -0.11 -1.63 9.33 -39.58 -0.37 -2.00 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 28 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 29 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 30 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.12 1.93 7.52 -52.49 -0.39 1.54 16 32 H 0.06 0.80 7.39 -51.93 -0.38 0.41 16 33 H 0.08 0.92 4.54 -51.93 -0.24 0.68 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.67 6.95 -51.93 -0.36 0.31 16 36 H 0.08 1.40 7.02 -51.93 -0.36 1.04 16 37 H 0.05 0.74 6.01 -51.93 -0.31 0.43 16 38 H 0.03 0.65 7.67 -51.92 -0.40 0.26 16 39 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.12 1.46 7.95 -52.49 -0.42 1.04 16 LS Contribution 334.54 15.07 5.04 5.04 Total: -1.00 -31.70 334.54 -8.02 -39.72 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.38 Total: 2.18 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -1.88 Total: -11.75 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.15 Total: -37.74 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.08 Total: -13.56 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.70 -8.02 -39.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121251060.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.172 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds