Wall clock time and date at job start Mon Mar 30 2020 02:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38258 * 120.00010 * 2 1 4 4 C 1.38212 * 120.00085 * 180.28042 * 3 2 1 5 5 C 1.38260 * 120.00041 * 359.73665 * 4 3 2 6 6 C 1.38214 * 119.99662 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.99514 * 179.97438 * 6 5 4 8 8 H 1.09007 * 109.46446 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47061 * 300.01560 * 7 6 5 10 10 C 1.50696 * 109.47358 * 60.02270 * 7 6 5 11 11 O 1.21277 * 120.00047 * 359.97438 * 10 7 6 12 12 N 1.34773 * 119.99897 * 179.97438 * 10 7 6 13 13 C 1.46502 * 120.00006 * 359.97438 * 12 10 7 14 14 C 1.46496 * 120.00383 * 179.97438 * 12 10 7 15 15 H 1.08997 * 109.46829 * 359.97438 * 14 12 10 16 16 C 1.52998 * 109.47556 * 240.00383 * 14 12 10 17 17 C 1.50700 * 109.47345 * 119.99942 * 14 12 10 18 18 H 1.07997 * 120.00042 * 359.97438 * 17 14 12 19 19 C 1.37884 * 119.99803 * 180.02562 * 17 14 12 20 20 N 1.31508 * 120.00235 * 359.97438 * 19 17 14 21 21 Si 1.86802 * 119.99784 * 179.97438 * 19 17 14 22 22 H 1.48504 * 109.47230 * 59.99626 * 21 19 17 23 23 H 1.48498 * 109.46946 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46981 * 299.99843 * 21 19 17 25 25 C 1.38211 * 120.00162 * 179.75882 * 2 1 3 26 26 H 1.09001 * 109.47236 * 270.23378 * 1 2 3 27 27 H 1.09000 * 109.47285 * 30.23570 * 1 2 3 28 28 H 1.08993 * 109.47149 * 150.24066 * 1 2 3 29 29 H 1.08004 * 120.00376 * 359.97438 * 3 2 1 30 30 H 1.08001 * 120.00378 * 179.72174 * 4 3 2 31 31 H 1.07997 * 119.99889 * 179.97438 * 5 4 3 32 32 H 1.09005 * 109.46522 * 60.00598 * 9 7 6 33 33 H 1.08998 * 109.47162 * 180.02562 * 9 7 6 34 34 H 1.08997 * 109.47094 * 300.01037 * 9 7 6 35 35 H 1.08998 * 109.47387 * 89.99975 * 13 12 10 36 36 H 1.09002 * 109.47284 * 209.99921 * 13 12 10 37 37 H 1.09001 * 109.47285 * 329.99888 * 13 12 10 38 38 H 1.09008 * 109.46996 * 299.99780 * 16 14 12 39 39 H 1.08996 * 109.47651 * 59.99283 * 16 14 12 40 40 H 1.08997 * 109.47678 * 180.02562 * 16 14 12 41 41 H 0.97005 * 120.00102 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.00200 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 -0.0059 5 6 4.2717 0.0000 -0.0062 6 6 3.5806 -1.1969 -0.0012 7 6 4.3342 -2.5020 -0.0022 8 1 3.6257 -3.3305 0.0017 9 6 5.2088 -2.5849 -1.2549 10 6 5.2053 -2.5800 1.2249 11 8 5.2139 -1.6657 2.0216 12 7 5.9750 -3.6658 1.4370 13 6 5.9642 -4.7706 0.4749 14 6 6.8223 -3.7415 2.6296 15 1 6.6984 -2.8347 3.2215 16 6 8.2865 -3.8780 2.2073 17 6 6.4237 -4.9384 3.4540 18 1 5.6193 -5.5784 3.1230 19 6 7.0853 -5.2157 4.6316 20 7 8.0645 -4.4360 5.0350 21 14 6.5907 -6.6989 5.6538 22 1 6.7599 -7.9345 4.8476 23 1 7.4498 -6.7756 6.8626 24 1 5.1695 -6.5660 6.0635 25 6 2.1980 -1.1969 0.0050 26 1 -0.3634 0.0042 1.0277 27 1 -0.3634 0.8878 -0.5175 28 1 -0.3633 -0.8921 -0.5101 29 1 1.6583 2.1327 -0.0004 30 1 4.1204 2.1327 -0.0104 31 1 5.3516 0.0001 -0.0112 32 1 5.9171 -1.7564 -1.2588 33 1 5.7535 -3.5291 -1.2558 34 1 4.5786 -2.5284 -2.1424 35 1 6.7302 -4.6010 -0.2818 36 1 6.1678 -5.7069 0.9945 37 1 4.9865 -4.8259 -0.0039 38 1 8.4109 -4.7847 1.6151 39 1 8.5749 -3.0123 1.6110 40 1 8.9169 -3.9347 3.0946 41 1 8.5302 -4.6314 5.8632 42 1 1.6581 -2.1323 0.0086 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121251060.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:59 Heat of formation + Delta-G solvation = -35.190738 kcal Electronic energy + Delta-G solvation = -21563.756936 eV Core-core repulsion = 18507.757182 eV Total energy + Delta-G solvation = -3055.999754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.36397 -39.83293 -37.13498 -35.66254 -34.57654 -33.13593 -31.53745 -30.14550 -27.74831 -27.63224 -27.30326 -25.52774 -23.56490 -22.88804 -21.39384 -19.64231 -18.45057 -17.98691 -17.36780 -17.13533 -16.39290 -16.23923 -15.82407 -15.51385 -14.87122 -14.52153 -14.46818 -14.41774 -14.01870 -13.85156 -13.61569 -13.36359 -13.23860 -12.99599 -12.97024 -12.80178 -12.74025 -12.59394 -12.49323 -12.28064 -12.16367 -12.11230 -11.81359 -11.65010 -11.20107 -10.60218 -10.40811 -9.66312 -9.41542 -9.29103 -8.14499 -6.31369 0.46980 0.53719 1.40897 1.43501 1.50859 1.84516 2.31967 2.49932 2.93036 3.13249 3.60436 3.76441 4.01822 4.08119 4.21678 4.26900 4.31598 4.47748 4.56871 4.62456 4.70264 4.73704 4.79228 4.87156 4.88281 4.90799 4.91547 5.02540 5.05141 5.07208 5.20795 5.27898 5.34952 5.48199 5.59454 5.61920 5.67780 5.71157 5.76210 6.05283 6.16724 6.18031 6.76787 6.86624 7.33130 7.51481 8.89635 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023940 B = 0.004429 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.320567 B = 6319.855784 C = 6601.737018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.098 4.098 3 C -0.130 4.130 4 C -0.130 4.130 5 C -0.112 4.112 6 C -0.072 4.072 7 C -0.062 4.062 8 H 0.120 0.880 9 C -0.144 4.144 10 C 0.498 3.502 11 O -0.598 6.598 12 N -0.598 5.598 13 C 0.076 3.924 14 C 0.262 3.738 15 H 0.004 0.996 16 C -0.130 4.130 17 C -0.539 4.539 18 H 0.062 0.938 19 C 0.014 3.986 20 N -0.918 5.918 21 Si 0.965 3.035 22 H -0.260 1.260 23 H -0.284 1.284 24 H -0.278 1.278 25 C -0.127 4.127 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.144 0.856 30 H 0.133 0.867 31 H 0.099 0.901 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.018 0.982 40 H 0.066 0.934 41 H 0.264 0.736 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.403 3.772 -15.555 19.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.098 4.098 3 C -0.148 4.148 4 C -0.148 4.148 5 C -0.131 4.131 6 C -0.072 4.072 7 C -0.083 4.083 8 H 0.138 0.862 9 C -0.201 4.201 10 C 0.287 3.713 11 O -0.480 6.480 12 N -0.329 5.329 13 C -0.066 4.066 14 C 0.160 3.840 15 H 0.022 0.978 16 C -0.189 4.189 17 C -0.577 4.577 18 H 0.080 0.920 19 C -0.185 4.185 20 N -0.557 5.557 21 Si 0.790 3.210 22 H -0.185 1.185 23 H -0.210 1.210 24 H -0.204 1.204 25 C -0.145 4.145 26 H 0.089 0.911 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.162 0.838 30 H 0.151 0.849 31 H 0.117 0.883 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.067 0.933 39 H 0.037 0.963 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.238 4.228 -15.005 19.218 hybrid contribution 0.452 -0.487 1.222 1.391 sum -10.787 3.741 -13.783 17.897 Atomic orbital electron populations 1.20802 0.88978 1.03918 1.02793 1.20237 0.97649 0.92692 0.99225 1.21306 0.93853 0.98570 1.01025 1.21330 0.95178 0.97867 1.00400 1.20936 0.99254 0.93064 0.99813 1.19515 0.94052 0.93809 0.99862 1.20309 0.97177 0.97247 0.93595 0.86246 1.22023 0.99413 1.03691 0.94936 1.21227 0.80625 0.81698 0.87777 1.90630 1.68211 1.39801 1.49309 1.48179 1.42421 1.18049 1.24218 1.22035 1.02847 0.89800 0.91878 1.18493 0.87456 0.95833 0.82233 0.97780 1.21851 0.98565 0.97977 1.00476 1.21563 1.18068 1.11238 1.06873 0.91999 1.25756 0.94796 0.99596 0.98389 1.70024 1.23270 1.39369 1.23072 0.85507 0.77829 0.79665 0.77998 1.18481 1.20969 1.20356 1.21148 0.92777 0.98963 1.01565 0.91071 0.90058 0.90486 0.83846 0.84868 0.88288 0.93449 0.89324 0.89155 0.91108 0.91400 0.89016 0.93341 0.96341 0.91549 0.92684 0.84614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 10.01 71.23 0.71 -1.05 16 2 C -0.10 -2.33 5.88 -19.87 -0.12 -2.45 16 3 C -0.13 -3.12 9.70 22.27 0.22 -2.90 16 4 C -0.13 -3.60 10.05 22.27 0.22 -3.38 16 5 C -0.11 -3.67 7.93 22.27 0.18 -3.49 16 6 C -0.07 -2.24 4.40 -19.86 -0.09 -2.33 16 7 C -0.06 -1.86 2.10 -12.29 -0.03 -1.89 16 8 H 0.12 3.00 7.13 -2.38 -0.02 2.98 16 9 C -0.14 -3.33 8.64 71.98 0.62 -2.70 16 10 C 0.50 21.19 6.95 87.66 0.61 21.80 16 11 O -0.60 -31.66 14.44 -3.02 -0.04 -31.70 16 12 N -0.60 -25.59 2.75 -826.82 -2.28 -27.87 16 13 C 0.08 2.36 7.80 127.77 1.00 3.36 16 14 C 0.26 13.94 2.64 44.25 0.12 14.06 16 15 H 0.00 0.27 6.90 -2.39 -0.02 0.25 16 16 C -0.13 -6.40 8.97 71.98 0.65 -5.75 16 17 C -0.54 -29.67 7.99 25.60 0.20 -29.47 16 18 H 0.06 3.28 7.33 -2.91 -0.02 3.26 16 19 C 0.01 0.78 5.30 84.66 0.45 1.23 16 20 N -0.92 -53.83 11.32 21.45 0.24 -53.59 16 21 Si 0.97 43.39 29.54 68.60 2.03 45.42 16 22 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 25 C -0.13 -3.39 9.33 22.27 0.21 -3.18 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 27 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 28 H 0.08 1.06 8.08 -2.39 -0.02 1.04 16 29 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 30 H 0.13 3.11 8.06 -2.91 -0.02 3.08 16 31 H 0.10 3.48 7.52 -2.91 -0.02 3.46 16 32 H 0.05 1.22 7.39 -2.38 -0.02 1.20 16 33 H 0.09 1.82 4.54 -2.39 -0.01 1.81 16 34 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.07 1.85 6.95 -2.39 -0.02 1.83 16 36 H 0.07 2.27 7.02 -2.39 -0.02 2.26 16 37 H 0.09 2.15 6.01 -2.39 -0.01 2.14 16 38 H 0.05 2.14 7.67 -2.38 -0.02 2.12 16 39 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.07 3.63 6.07 -2.39 -0.01 3.61 16 41 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 42 H 0.14 3.01 7.95 -2.91 -0.02 2.99 16 Total: -1.00 -72.64 334.54 5.90 -66.74 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 1.00 Total: 19.15 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: 4.95 Total: -18.15 kcal Atomic # 7 Polarization: -79.43 SS G_CDS: -2.03 Total: -81.46 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -0.04 Total: -31.70 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -72.64 5.90 -66.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121251060.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.552 kcal (2) G-P(sol) polarization free energy of solvation -72.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds