Wall clock time and date at job start Mon Mar 30 2020 01:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38241 * 119.99437 * 2 1 4 4 C 1.38238 * 119.99768 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00117 * 179.97438 * 4 3 2 6 6 C 1.38234 * 120.00037 * 0.02562 * 4 3 2 7 7 C 1.38235 * 119.99836 * 0.02562 * 6 4 3 8 8 C 1.50706 * 119.99802 * 179.97438 * 7 6 4 9 9 C 1.53002 * 109.46925 * 90.00320 * 8 7 6 10 10 C 1.50696 * 109.47300 * 180.02562 * 9 8 7 11 11 O 1.21279 * 119.99697 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00141 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99854 * 0.02562 * 12 10 9 14 14 C 1.46496 * 119.99875 * 179.97438 * 12 10 9 15 15 C 1.50703 * 109.47067 * 90.00619 * 14 12 10 16 16 H 1.08005 * 119.99711 * 359.97438 * 15 14 12 17 17 C 1.37872 * 120.00286 * 180.02562 * 15 14 12 18 18 N 1.31510 * 120.00046 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00272 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47024 * 359.97438 * 19 17 15 21 21 H 1.48491 * 109.47385 * 119.99718 * 19 17 15 22 22 H 1.48497 * 109.46876 * 240.00029 * 19 17 15 23 23 C 1.38231 * 120.00255 * 0.25368 * 7 6 4 24 24 H 1.09000 * 109.47051 * 90.00050 * 1 2 3 25 25 H 1.09000 * 109.46623 * 209.99780 * 1 2 3 26 26 H 1.08997 * 109.47526 * 329.99572 * 1 2 3 27 27 H 1.08001 * 120.00379 * 0.02562 * 3 2 1 28 28 H 1.09002 * 109.46946 * 270.02899 * 5 4 3 29 29 H 1.09003 * 109.47164 * 30.02317 * 5 4 3 30 30 H 1.08995 * 109.47693 * 150.02350 * 5 4 3 31 31 H 1.07997 * 119.99984 * 179.97438 * 6 4 3 32 32 H 1.09000 * 109.47318 * 209.99554 * 8 7 6 33 33 H 1.09000 * 109.47161 * 330.00185 * 8 7 6 34 34 H 1.09004 * 109.46930 * 299.99901 * 9 8 7 35 35 H 1.09004 * 109.47059 * 59.99503 * 9 8 7 36 36 H 1.08990 * 109.47071 * 89.99723 * 13 12 10 37 37 H 1.08999 * 109.46626 * 210.00015 * 13 12 10 38 38 H 1.08996 * 109.47068 * 329.99428 * 13 12 10 39 39 H 1.08997 * 109.47346 * 210.00204 * 14 12 10 40 40 H 1.08999 * 109.47701 * 330.00788 * 14 12 10 41 41 H 0.97007 * 120.00737 * 179.97438 * 18 17 15 42 42 H 1.07997 * 120.00101 * 179.72736 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.3339 2.5025 -0.0011 6 6 4.2717 0.0002 -0.0016 7 6 3.5806 -1.1969 -0.0027 8 6 4.3342 -2.5020 -0.0044 9 6 4.5897 -2.9453 1.4375 10 6 5.3438 -4.2500 1.4359 11 8 5.6466 -4.7740 0.3849 12 7 5.6817 -4.8346 2.6023 13 6 5.3154 -4.2018 3.8719 14 6 6.4143 -6.1032 2.6006 15 6 7.8959 -5.8276 2.5999 16 1 8.2558 -4.8093 2.6001 17 6 8.7920 -6.8754 2.5978 18 7 8.3539 -8.1154 2.5969 19 14 10.6286 -6.5338 2.5961 20 1 10.8592 -5.0668 2.5968 21 1 11.2446 -7.1327 3.8072 22 1 11.2418 -7.1303 1.3823 23 6 2.1983 -1.1970 -0.0080 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3632 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.6580 2.1326 0.0004 28 1 4.5147 2.8171 -1.0289 29 1 3.7452 3.2621 0.5131 30 1 5.2867 2.3723 0.5120 31 1 5.3517 0.0003 -0.0024 32 1 3.7450 -3.2612 -0.5188 33 1 5.2864 -2.3711 -0.5185 34 1 5.1789 -2.1861 1.9520 35 1 3.6374 -3.0762 1.9515 36 1 4.3351 -4.5595 4.1864 37 1 6.0554 -4.4553 4.6309 38 1 5.2833 -3.1200 3.7427 39 1 6.1518 -6.6756 3.4903 40 1 6.1505 -6.6740 1.7103 41 1 8.9843 -8.8527 2.5950 42 1 1.6584 -2.1324 -0.0133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123095630.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:51 Heat of formation + Delta-G solvation = -37.086451 kcal Electronic energy + Delta-G solvation = -20495.858716 eV Core-core repulsion = 17439.776758 eV Total energy + Delta-G solvation = -3056.081958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.80239 -38.83035 -34.92014 -34.24891 -33.62769 -32.58611 -30.36698 -27.90073 -27.34626 -26.77551 -25.84663 -24.55510 -22.34158 -20.81991 -20.26625 -18.29577 -16.54921 -16.45838 -16.11099 -15.93549 -15.25739 -14.84226 -14.35163 -14.27092 -14.07504 -13.39605 -13.36233 -13.08299 -12.98269 -12.70824 -12.61280 -12.26665 -12.16813 -12.11649 -11.89543 -11.77437 -11.33524 -11.18565 -11.11848 -10.93735 -10.81737 -10.67652 -10.55458 -10.14257 -9.58880 -8.92813 -8.61449 -8.55485 -8.42506 -7.60493 -6.02913 -4.07597 1.30558 1.31091 3.30508 3.37662 3.41239 3.49952 3.62454 4.04831 4.45964 4.64411 4.68528 4.74446 5.06864 5.15461 5.18920 5.28901 5.29835 5.33019 5.38325 5.39090 5.45264 5.47715 5.61480 5.66012 5.67923 5.69570 5.87177 5.93188 6.00731 6.06315 6.18451 6.24681 6.37441 6.49034 6.50819 6.68715 6.99235 7.08713 7.46868 7.57662 7.93856 8.25576 8.46160 8.92558 9.14012 9.57619 11.05200 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026826 B = 0.003362 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.513351 B = 8327.239207 C = 8849.534823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.084 4.084 3 C -0.130 4.130 4 C -0.083 4.083 5 C -0.114 4.114 6 C -0.123 4.123 7 C -0.065 4.065 8 C -0.067 4.067 9 C -0.131 4.131 10 C 0.502 3.498 11 O -0.544 6.544 12 N -0.604 5.604 13 C 0.084 3.916 14 C 0.244 3.756 15 C -0.525 4.525 16 H 0.057 0.943 17 C 0.060 3.940 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.123 4.123 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.117 0.883 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.122 0.878 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.043 0.957 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.031 0.969 40 H 0.043 0.957 41 H 0.262 0.738 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.894 19.017 -1.809 23.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.084 4.084 3 C -0.148 4.148 4 C -0.083 4.083 5 C -0.170 4.170 6 C -0.141 4.141 7 C -0.065 4.065 8 C -0.104 4.104 9 C -0.171 4.171 10 C 0.289 3.711 11 O -0.422 6.422 12 N -0.337 5.337 13 C -0.060 4.060 14 C 0.125 3.875 15 C -0.564 4.564 16 H 0.076 0.924 17 C -0.142 4.142 18 N -0.534 5.534 19 Si 0.726 3.274 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.141 4.141 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.135 0.865 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.140 0.860 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.662 18.527 -2.338 23.138 hybrid contribution 1.081 0.100 0.192 1.103 sum -12.581 18.627 -2.146 22.579 Atomic orbital electron populations 1.20778 0.91375 1.02646 1.02195 1.19872 0.95874 0.93130 0.99504 1.20831 0.93484 0.97328 1.03201 1.19878 0.93792 0.95225 0.99407 1.20784 0.99960 0.94082 1.02219 1.20976 0.99859 0.91414 1.01835 1.19990 0.93667 0.95165 0.97704 1.20363 1.00758 0.93035 0.96265 1.21652 1.01085 0.96408 0.98001 1.20371 0.80251 0.86300 0.84179 1.90661 1.55442 1.65173 1.30911 1.48171 1.55543 1.25344 1.04593 1.21628 0.99905 0.97029 0.87470 1.19283 0.90621 0.79268 0.98357 1.21484 0.91081 0.93016 1.50800 0.92442 1.24946 0.99219 0.94915 0.95119 1.69944 1.34636 0.98238 1.50632 0.86440 0.85029 0.78356 0.77585 1.19812 1.20967 1.20860 1.20950 0.93628 0.97540 1.02012 0.91313 0.91513 0.91747 0.86518 0.91295 0.91743 0.91466 0.86038 0.90234 0.90126 0.89514 0.89679 0.93817 0.90856 0.92424 0.95079 0.93862 0.92786 0.86101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.01 0.36 -0.51 16 2 C -0.08 -0.87 5.88 -104.62 -0.62 -1.49 16 3 C -0.13 -1.32 9.36 -39.58 -0.37 -1.69 16 4 C -0.08 -0.88 5.88 -104.62 -0.62 -1.50 16 5 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 6 C -0.12 -1.46 9.36 -39.58 -0.37 -1.83 16 7 C -0.07 -0.82 5.13 -104.62 -0.54 -1.36 16 8 C -0.07 -0.96 4.64 -27.88 -0.13 -1.09 16 9 C -0.13 -1.98 4.23 -27.88 -0.12 -2.10 16 10 C 0.50 10.57 7.67 -10.99 -0.08 10.49 16 11 O -0.54 -13.83 15.56 5.56 0.09 -13.74 16 12 N -0.60 -13.10 2.86 -182.96 -0.52 -13.63 16 13 C 0.08 1.36 10.24 59.85 0.61 1.97 16 14 C 0.24 6.52 5.16 -5.19 -0.03 6.49 16 15 C -0.52 -15.16 9.39 -34.44 -0.32 -15.48 16 16 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 18 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 19 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 C -0.12 -1.43 9.36 -39.59 -0.37 -1.80 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 26 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 27 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 30 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 31 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.08 1.19 8.04 -51.93 -0.42 0.77 16 33 H 0.08 1.25 8.04 -51.93 -0.42 0.83 16 34 H 0.09 1.20 7.40 -51.93 -0.38 0.81 16 35 H 0.08 1.12 8.11 -51.93 -0.42 0.69 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 38 H 0.06 0.77 6.44 -51.93 -0.33 0.43 16 39 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 40 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 353.00 15.07 5.32 5.32 Total: -1.00 -33.63 353.00 -8.68 -42.32 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.96 Total: -2.32 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -2.32 Total: -8.81 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.21 Total: -39.85 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.09 Total: -13.74 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.63 -8.68 -42.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123095630.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.229 kcal (2) G-P(sol) polarization free energy of solvation -33.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds