Wall clock time and date at job start Mon Mar 30 2020 01:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38241 * 119.99437 * 2 1 4 4 C 1.38238 * 119.99768 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00117 * 179.97438 * 4 3 2 6 6 C 1.38234 * 120.00037 * 0.02562 * 4 3 2 7 7 C 1.38235 * 119.99836 * 0.02562 * 6 4 3 8 8 C 1.50706 * 119.99802 * 179.97438 * 7 6 4 9 9 C 1.53002 * 109.46925 * 90.00320 * 8 7 6 10 10 C 1.50696 * 109.47300 * 180.02562 * 9 8 7 11 11 O 1.21279 * 119.99697 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00141 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99854 * 0.02562 * 12 10 9 14 14 C 1.46496 * 119.99875 * 179.97438 * 12 10 9 15 15 C 1.50703 * 109.47067 * 90.00619 * 14 12 10 16 16 H 1.08005 * 119.99711 * 359.97438 * 15 14 12 17 17 C 1.37872 * 120.00286 * 180.02562 * 15 14 12 18 18 N 1.31510 * 120.00046 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00272 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47024 * 359.97438 * 19 17 15 21 21 H 1.48491 * 109.47385 * 119.99718 * 19 17 15 22 22 H 1.48497 * 109.46876 * 240.00029 * 19 17 15 23 23 C 1.38231 * 120.00255 * 0.25368 * 7 6 4 24 24 H 1.09000 * 109.47051 * 90.00050 * 1 2 3 25 25 H 1.09000 * 109.46623 * 209.99780 * 1 2 3 26 26 H 1.08997 * 109.47526 * 329.99572 * 1 2 3 27 27 H 1.08001 * 120.00379 * 0.02562 * 3 2 1 28 28 H 1.09002 * 109.46946 * 270.02899 * 5 4 3 29 29 H 1.09003 * 109.47164 * 30.02317 * 5 4 3 30 30 H 1.08995 * 109.47693 * 150.02350 * 5 4 3 31 31 H 1.07997 * 119.99984 * 179.97438 * 6 4 3 32 32 H 1.09000 * 109.47318 * 209.99554 * 8 7 6 33 33 H 1.09000 * 109.47161 * 330.00185 * 8 7 6 34 34 H 1.09004 * 109.46930 * 299.99901 * 9 8 7 35 35 H 1.09004 * 109.47059 * 59.99503 * 9 8 7 36 36 H 1.08990 * 109.47071 * 89.99723 * 13 12 10 37 37 H 1.08999 * 109.46626 * 210.00015 * 13 12 10 38 38 H 1.08996 * 109.47068 * 329.99428 * 13 12 10 39 39 H 1.08997 * 109.47346 * 210.00204 * 14 12 10 40 40 H 1.08999 * 109.47701 * 330.00788 * 14 12 10 41 41 H 0.97007 * 120.00737 * 179.97438 * 18 17 15 42 42 H 1.07997 * 120.00101 * 179.72736 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.3339 2.5025 -0.0011 6 6 4.2717 0.0002 -0.0016 7 6 3.5806 -1.1969 -0.0027 8 6 4.3342 -2.5020 -0.0044 9 6 4.5897 -2.9453 1.4375 10 6 5.3438 -4.2500 1.4359 11 8 5.6466 -4.7740 0.3849 12 7 5.6817 -4.8346 2.6023 13 6 5.3154 -4.2018 3.8719 14 6 6.4143 -6.1032 2.6006 15 6 7.8959 -5.8276 2.5999 16 1 8.2558 -4.8093 2.6001 17 6 8.7920 -6.8754 2.5978 18 7 8.3539 -8.1154 2.5969 19 14 10.6286 -6.5338 2.5961 20 1 10.8592 -5.0668 2.5968 21 1 11.2446 -7.1327 3.8072 22 1 11.2418 -7.1303 1.3823 23 6 2.1983 -1.1970 -0.0080 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3632 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.6580 2.1326 0.0004 28 1 4.5147 2.8171 -1.0289 29 1 3.7452 3.2621 0.5131 30 1 5.2867 2.3723 0.5120 31 1 5.3517 0.0003 -0.0024 32 1 3.7450 -3.2612 -0.5188 33 1 5.2864 -2.3711 -0.5185 34 1 5.1789 -2.1861 1.9520 35 1 3.6374 -3.0762 1.9515 36 1 4.3351 -4.5595 4.1864 37 1 6.0554 -4.4553 4.6309 38 1 5.2833 -3.1200 3.7427 39 1 6.1518 -6.6756 3.4903 40 1 6.1505 -6.6740 1.7103 41 1 8.9843 -8.8527 2.5950 42 1 1.6584 -2.1324 -0.0133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123095630.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:51 Heat of formation + Delta-G solvation = -55.761653 kcal Electronic energy + Delta-G solvation = -20496.668534 eV Core-core repulsion = 17439.776758 eV Total energy + Delta-G solvation = -3056.891775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.89833 -40.25818 -36.66358 -35.42804 -34.69946 -34.34163 -31.56070 -29.67843 -28.13190 -27.51518 -27.34357 -26.10073 -24.11981 -21.57231 -21.25529 -19.93166 -18.71715 -17.85406 -17.11088 -17.09949 -16.96605 -16.30491 -16.08607 -15.19384 -14.90951 -14.76293 -14.39762 -14.05561 -13.96734 -13.80335 -13.70677 -13.58621 -13.44490 -13.36280 -13.28628 -13.05449 -12.82807 -12.73508 -12.54868 -12.22596 -12.10656 -12.08668 -11.76858 -11.73332 -11.67645 -10.66621 -10.62009 -9.46533 -9.42822 -9.41215 -8.23977 -6.39274 0.45798 0.48870 1.35215 1.37820 1.49767 1.83777 2.31578 2.45813 2.83387 3.05272 3.61897 3.86931 3.97079 4.01058 4.18323 4.22893 4.30661 4.40219 4.51503 4.53837 4.66360 4.69153 4.73301 4.78165 4.84111 4.84691 4.88524 4.94919 5.02212 5.08606 5.09454 5.15900 5.21933 5.33288 5.41094 5.55091 5.69636 5.70182 5.79138 5.83313 6.04736 6.18417 6.68298 6.78544 7.26745 7.48036 8.83366 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026826 B = 0.003362 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.513351 B = 8327.239207 C = 8849.534823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.087 4.087 3 C -0.133 4.133 4 C -0.087 4.087 5 C -0.113 4.113 6 C -0.139 4.139 7 C -0.076 4.076 8 C -0.059 4.059 9 C -0.112 4.112 10 C 0.492 3.508 11 O -0.600 6.600 12 N -0.613 5.613 13 C 0.078 3.922 14 C 0.257 3.743 15 C -0.543 4.543 16 H 0.053 0.947 17 C 0.006 3.994 18 N -0.929 5.929 19 Si 0.970 3.030 20 H -0.267 1.267 21 H -0.268 1.268 22 H -0.281 1.281 23 C -0.136 4.136 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.140 0.860 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.121 0.879 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.023 0.977 40 H -0.003 1.003 41 H 0.268 0.732 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.553 21.821 -0.843 26.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.087 4.087 3 C -0.151 4.151 4 C -0.087 4.087 5 C -0.169 4.169 6 C -0.157 4.157 7 C -0.076 4.076 8 C -0.097 4.097 9 C -0.152 4.152 10 C 0.282 3.718 11 O -0.481 6.481 12 N -0.344 5.344 13 C -0.064 4.064 14 C 0.136 3.864 15 C -0.582 4.582 16 H 0.071 0.929 17 C -0.193 4.193 18 N -0.569 5.569 19 Si 0.794 3.206 20 H -0.191 1.191 21 H -0.193 1.193 22 H -0.207 1.207 23 C -0.154 4.154 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.158 0.842 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.139 0.861 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.041 0.959 40 H 0.015 0.985 41 H 0.076 0.924 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.349 21.364 -1.332 25.769 hybrid contribution 1.210 -0.758 -0.124 1.433 sum -13.139 20.606 -1.457 24.482 Atomic orbital electron populations 1.20827 0.89445 1.03628 1.02980 1.20205 0.97372 0.92722 0.98408 1.21175 0.93475 0.98255 1.02182 1.20190 0.94362 0.95705 0.98491 1.20829 1.00004 0.93154 1.02953 1.21087 1.00059 0.91846 1.02683 1.19795 0.94062 0.94192 0.99534 1.20212 0.99911 0.94018 0.95558 1.21599 1.01588 0.92905 0.99080 1.21460 0.79682 0.87689 0.83011 1.90627 1.57650 1.66987 1.32884 1.48226 1.54980 1.24061 1.07112 1.21931 1.00923 0.98878 0.84637 1.18758 0.90605 0.81424 0.95619 1.21745 0.92337 0.92939 1.51185 0.92882 1.25897 1.04413 0.94613 0.94389 1.70060 1.36543 0.99223 1.51077 0.85333 0.78700 0.78530 0.78034 1.19083 1.19262 1.20706 1.21087 0.93290 0.98506 1.02515 0.90536 0.91109 0.90247 0.84195 0.90559 0.90167 0.91315 0.86103 0.91564 0.92089 0.87379 0.86805 0.91092 0.91568 0.88868 0.95874 0.98526 0.92354 0.85666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 10.01 71.24 0.71 -0.71 16 2 C -0.09 -1.61 5.88 -19.87 -0.12 -1.73 16 3 C -0.13 -2.33 9.36 22.27 0.21 -2.12 16 4 C -0.09 -1.67 5.88 -19.87 -0.12 -1.78 16 5 C -0.11 -1.53 10.01 71.24 0.71 -0.82 16 6 C -0.14 -3.15 9.36 22.27 0.21 -2.94 16 7 C -0.08 -1.85 5.13 -19.86 -0.10 -1.95 16 8 C -0.06 -1.72 4.64 29.85 0.14 -1.58 16 9 C -0.11 -3.25 4.23 29.85 0.13 -3.13 16 10 C 0.49 21.08 7.67 87.66 0.67 21.75 16 11 O -0.60 -32.06 15.56 -3.03 -0.05 -32.11 16 12 N -0.61 -26.82 2.86 -851.16 -2.43 -29.26 16 13 C 0.08 2.39 10.24 127.77 1.31 3.70 16 14 C 0.26 14.33 5.16 85.63 0.44 14.78 16 15 C -0.54 -32.14 9.39 25.60 0.24 -31.90 16 16 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 17 C 0.01 0.33 5.46 84.65 0.46 0.80 16 18 N -0.93 -57.23 13.29 21.44 0.28 -56.94 16 19 Si 0.97 45.63 29.54 68.60 2.03 47.65 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 22 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 23 C -0.14 -2.97 9.36 22.27 0.21 -2.76 16 24 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.07 0.84 8.09 -2.39 -0.02 0.82 16 26 H 0.08 0.77 8.09 -2.39 -0.02 0.75 16 27 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.08 0.83 8.09 -2.39 -0.02 0.81 16 30 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 31 H 0.12 2.65 8.06 -2.91 -0.02 2.63 16 32 H 0.07 2.06 8.04 -2.39 -0.02 2.05 16 33 H 0.06 1.98 8.04 -2.39 -0.02 1.96 16 34 H 0.11 2.72 7.40 -2.38 -0.02 2.70 16 35 H 0.11 2.69 8.11 -2.39 -0.02 2.67 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.07 2.12 8.07 -2.39 -0.02 2.10 16 38 H 0.09 2.18 6.44 -2.39 -0.02 2.17 16 39 H 0.02 1.30 8.07 -2.39 -0.02 1.28 16 40 H 0.00 -0.22 7.42 -2.39 -0.02 -0.24 16 41 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 42 H 0.13 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -75.91 353.00 5.91 -70.00 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 0.97 Total: 11.06 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: 5.11 Total: -10.40 kcal Atomic # 7 Polarization: -84.05 SS G_CDS: -2.15 Total: -86.20 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -0.05 Total: -32.11 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -75.91 5.91 -70.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123095630.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.235 kcal (2) G-P(sol) polarization free energy of solvation -75.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds