Wall clock time and date at job start Mon Mar 30 2020 02:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38258 * 119.99997 * 2 1 4 4 C 1.38211 * 119.99784 * 180.23526 * 3 2 1 5 5 C 1.38256 * 120.00062 * 359.47854 * 4 3 2 6 6 C 1.38214 * 120.00160 * 0.26318 * 5 4 3 7 7 C 1.38212 * 119.99856 * 179.71368 * 2 1 3 8 8 C 1.50706 * 120.00275 * 0.02562 * 7 2 1 9 9 H 1.09005 * 109.50152 * 34.92837 * 8 7 2 10 10 C 1.53100 * 109.50217 * 274.80134 * 8 7 2 11 11 N 1.47016 * 109.25403 * 183.21307 * 10 8 7 12 12 C 1.46899 * 110.99691 * 182.39095 * 11 10 8 13 13 C 1.53000 * 109.47451 * 302.41209 * 12 11 10 14 14 C 1.50701 * 109.47284 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00051 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99929 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00235 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99794 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47200 * 59.99666 * 18 16 14 20 20 H 1.48504 * 109.46656 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47128 * 299.99352 * 18 16 14 22 22 C 1.47008 * 110.75129 * 58.61852 * 11 10 8 23 23 C 1.53101 * 109.25694 * 301.38035 * 22 11 10 24 24 O 1.43009 * 109.50882 * 155.01754 * 8 7 2 25 25 H 1.09003 * 109.47135 * 270.28406 * 1 2 3 26 26 H 1.09000 * 109.46785 * 30.28531 * 1 2 3 27 27 H 1.09002 * 109.47199 * 150.28503 * 1 2 3 28 28 H 1.07998 * 119.99823 * 359.97438 * 3 2 1 29 29 H 1.08002 * 120.00200 * 179.76459 * 4 3 2 30 30 H 1.07999 * 120.00077 * 180.28382 * 5 4 3 31 31 H 1.07997 * 120.00449 * 180.02562 * 6 5 4 32 32 H 1.08994 * 109.50717 * 303.14901 * 10 8 7 33 33 H 1.09007 * 109.50637 * 63.28186 * 10 8 7 34 34 H 1.09002 * 109.47098 * 62.41528 * 12 11 10 35 35 H 1.09004 * 109.47090 * 182.41082 * 12 11 10 36 36 H 1.08993 * 109.47010 * 300.00222 * 13 12 11 37 37 H 1.09005 * 109.46673 * 60.00219 * 13 12 11 38 38 H 0.96992 * 119.99941 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.50782 * 181.44512 * 22 11 10 40 40 H 1.08996 * 109.54456 * 61.33652 * 22 11 10 41 41 H 1.08992 * 109.50574 * 296.91367 * 23 22 11 42 42 H 1.09009 * 109.53869 * 176.80976 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5805 1.1973 -0.0049 5 6 4.2717 0.0000 0.0011 6 6 3.5807 -1.1970 0.0065 7 6 2.1981 -1.1970 0.0060 8 6 1.4446 -2.5021 0.0119 9 1 0.5333 -2.3989 -0.5772 10 6 1.0839 -2.8775 1.4517 11 7 0.4174 -4.1879 1.4586 12 6 0.0031 -4.5605 2.8178 13 6 1.2251 -4.5724 3.7383 14 6 0.8001 -4.9554 5.1325 15 1 -0.2379 -5.1685 5.3413 16 6 1.7362 -5.0326 6.1418 17 7 3.0001 -4.7726 5.8878 18 14 1.2092 -5.5065 7.8702 19 1 0.5941 -6.8580 7.8471 20 1 2.3954 -5.5182 8.7636 21 1 0.2194 -4.5207 8.3737 22 6 1.2872 -5.2177 0.8720 23 6 1.6459 -4.8188 -0.5620 24 8 2.2642 -3.5293 -0.5522 25 1 -0.3633 0.0051 1.0277 26 1 -0.3633 0.8874 -0.5183 27 1 -0.3634 -0.8925 -0.5094 28 1 1.6583 2.1326 -0.0004 29 1 4.1205 2.1326 -0.0088 30 1 5.3517 0.0000 0.0019 31 1 4.1206 -2.1323 0.0116 32 1 1.9915 -2.9276 2.0530 33 1 0.4126 -2.1255 1.8666 34 1 -0.7233 -3.8368 3.1875 35 1 -0.4487 -5.5524 2.8008 36 1 1.9514 -5.2962 3.3686 37 1 1.6768 -3.5805 3.7553 38 1 3.6587 -4.8273 6.5977 39 1 0.7644 -6.1741 0.8638 40 1 2.1982 -5.3060 1.4639 41 1 0.7402 -4.7836 -1.1673 42 1 2.3362 -5.5504 -0.9821 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126341044.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:01 Heat of formation + Delta-G solvation = -24.938280 kcal Electronic energy + Delta-G solvation = -21639.911934 eV Core-core repulsion = 18584.356761 eV Total energy + Delta-G solvation = -3055.555174 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.07920 -38.57616 -35.84936 -33.28018 -32.87548 -31.99238 -29.88892 -29.21903 -26.94529 -26.47191 -24.01177 -23.71690 -22.20886 -21.32829 -20.46316 -19.25219 -16.79742 -16.38722 -16.30878 -15.61109 -15.17985 -14.81308 -14.57359 -14.31281 -14.18314 -13.90735 -13.60373 -13.09705 -13.01889 -12.94638 -12.32613 -12.22862 -12.13974 -11.93796 -11.51477 -11.26595 -11.02428 -10.95585 -10.93397 -10.77746 -10.67939 -10.26565 -9.88302 -9.74373 -9.45888 -9.17385 -8.65361 -8.47101 -8.37552 -7.61054 -6.03695 -4.07260 1.41063 1.51185 3.30624 3.35226 3.37455 3.77792 3.93888 4.38110 4.47531 4.90051 4.91736 5.04306 5.15338 5.24830 5.25371 5.31493 5.39665 5.41074 5.56313 5.60331 5.68822 5.70399 5.79686 5.87712 5.89606 6.08773 6.15633 6.20297 6.25320 6.33996 6.38115 6.55352 6.60875 6.63412 6.73984 6.85419 7.10416 7.35171 7.42449 7.45880 7.63112 7.77226 7.95730 8.37654 8.99434 9.57133 11.07331 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017722 B = 0.004744 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.572112 B = 5900.766563 C = 6510.486640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.076 4.076 3 C -0.125 4.125 4 C -0.119 4.119 5 C -0.130 4.130 6 C -0.087 4.087 7 C -0.078 4.078 8 C 0.135 3.865 9 H 0.074 0.926 10 C 0.030 3.970 11 N -0.540 5.540 12 C 0.057 3.943 13 C -0.009 4.009 14 C -0.522 4.522 15 H 0.055 0.945 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.013 3.987 23 C 0.068 3.932 24 O -0.381 6.381 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.129 0.871 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.017 0.983 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.080 0.920 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.820 8.259 -14.625 16.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.076 4.076 3 C -0.143 4.143 4 C -0.137 4.137 5 C -0.148 4.148 6 C -0.105 4.105 7 C -0.078 4.078 8 C 0.077 3.923 9 H 0.091 0.909 10 C -0.099 4.099 11 N -0.264 5.264 12 C -0.070 4.070 13 C -0.047 4.047 14 C -0.560 4.560 15 H 0.074 0.926 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.116 4.116 23 C -0.009 4.009 24 O -0.300 6.300 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.147 0.853 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.035 0.965 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.901 8.328 -14.904 17.179 hybrid contribution 0.401 -0.425 1.791 1.884 sum -1.500 7.902 -13.113 15.384 Atomic orbital electron populations 1.20904 0.91225 1.02771 1.02806 1.19651 0.96028 0.92290 0.99652 1.20918 0.94246 0.97100 1.02034 1.21102 0.94309 0.97929 1.00379 1.21140 0.99845 0.92501 1.01272 1.21039 0.93649 0.98456 0.97313 1.19456 0.94022 0.92969 1.01390 1.20934 0.92153 0.84990 0.94178 0.90883 1.22663 0.99495 0.92489 0.95234 1.62651 1.39072 1.01552 1.23111 1.22344 0.99274 1.00060 0.85316 1.19656 0.93261 0.97408 0.94384 1.21102 0.94180 1.46895 0.93861 0.92637 1.25022 0.94916 0.95303 0.99056 1.69956 1.01143 1.49109 1.33095 0.86650 0.77977 0.79112 0.84228 1.20197 1.21271 1.20191 1.22754 0.97412 0.96057 0.95371 1.22655 0.97752 0.84467 0.96053 1.87913 1.42879 1.17222 1.82034 0.90699 0.91656 0.91066 0.86172 0.86346 0.86194 0.85296 0.92446 0.90189 0.91812 0.91817 0.96507 0.96296 0.92908 0.90136 0.92838 0.92848 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 9.42 36.01 0.34 -0.98 16 2 C -0.08 -1.00 5.88 -104.62 -0.62 -1.62 16 3 C -0.12 -1.50 9.70 -39.58 -0.38 -1.88 16 4 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 5 C -0.13 -1.68 10.05 -39.58 -0.40 -2.08 16 6 C -0.09 -1.29 9.35 -39.58 -0.37 -1.66 16 7 C -0.08 -1.17 5.07 -104.62 -0.53 -1.70 16 8 C 0.14 2.10 2.52 -27.83 -0.07 2.03 16 9 H 0.07 1.06 6.16 -51.93 -0.32 0.74 16 10 C 0.03 0.53 4.39 -3.71 -0.02 0.51 16 11 N -0.54 -9.84 4.94 -234.31 -1.16 -10.99 16 12 C 0.06 1.19 5.32 -3.82 -0.02 1.17 16 13 C -0.01 -0.23 4.26 -27.88 -0.12 -0.35 16 14 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.06 13.29 55.43 0.74 -26.33 16 18 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C 0.01 0.21 5.33 -3.71 -0.02 0.19 16 23 C 0.07 0.96 7.01 37.21 0.26 1.22 16 24 O -0.38 -6.15 9.31 -35.23 -0.33 -6.48 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 27 H 0.07 0.77 6.03 -51.93 -0.31 0.46 16 28 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 29 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 30 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 31 H 0.13 1.98 7.35 -52.49 -0.39 1.59 16 32 H 0.06 1.22 6.40 -51.93 -0.33 0.89 16 33 H 0.08 1.39 7.96 -51.92 -0.41 0.98 16 34 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.06 1.30 8.11 -51.93 -0.42 0.88 16 36 H 0.02 0.46 6.61 -51.93 -0.34 0.12 16 37 H 0.02 0.52 6.42 -51.93 -0.33 0.19 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.08 1.25 8.12 -51.93 -0.42 0.83 16 40 H 0.05 1.05 6.59 -51.93 -0.34 0.71 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 1.13 8.14 -51.92 -0.42 0.71 16 LS Contribution 331.94 15.07 5.00 5.00 Total: -1.00 -30.99 331.94 -10.07 -41.06 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.55 Total: 1.48 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -2.75 Total: -20.42 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: -0.42 Total: -37.32 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.33 Total: -6.48 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.99 -10.07 -41.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126341044.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.121 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds