Wall clock time and date at job start Mon Mar 30 2020 02:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38258 * 119.99997 * 2 1 4 4 C 1.38211 * 119.99784 * 180.23526 * 3 2 1 5 5 C 1.38256 * 120.00062 * 359.47854 * 4 3 2 6 6 C 1.38214 * 120.00160 * 0.26318 * 5 4 3 7 7 C 1.38212 * 119.99856 * 179.71368 * 2 1 3 8 8 C 1.50706 * 120.00275 * 0.02562 * 7 2 1 9 9 H 1.09005 * 109.50152 * 34.92837 * 8 7 2 10 10 C 1.53100 * 109.50217 * 274.80134 * 8 7 2 11 11 N 1.47016 * 109.25403 * 183.21307 * 10 8 7 12 12 C 1.46899 * 110.99691 * 182.39095 * 11 10 8 13 13 C 1.53000 * 109.47451 * 302.41209 * 12 11 10 14 14 C 1.50701 * 109.47284 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00051 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99929 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00235 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99794 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47200 * 59.99666 * 18 16 14 20 20 H 1.48504 * 109.46656 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47128 * 299.99352 * 18 16 14 22 22 C 1.47008 * 110.75129 * 58.61852 * 11 10 8 23 23 C 1.53101 * 109.25694 * 301.38035 * 22 11 10 24 24 O 1.43009 * 109.50882 * 155.01754 * 8 7 2 25 25 H 1.09003 * 109.47135 * 270.28406 * 1 2 3 26 26 H 1.09000 * 109.46785 * 30.28531 * 1 2 3 27 27 H 1.09002 * 109.47199 * 150.28503 * 1 2 3 28 28 H 1.07998 * 119.99823 * 359.97438 * 3 2 1 29 29 H 1.08002 * 120.00200 * 179.76459 * 4 3 2 30 30 H 1.07999 * 120.00077 * 180.28382 * 5 4 3 31 31 H 1.07997 * 120.00449 * 180.02562 * 6 5 4 32 32 H 1.08994 * 109.50717 * 303.14901 * 10 8 7 33 33 H 1.09007 * 109.50637 * 63.28186 * 10 8 7 34 34 H 1.09002 * 109.47098 * 62.41528 * 12 11 10 35 35 H 1.09004 * 109.47090 * 182.41082 * 12 11 10 36 36 H 1.08993 * 109.47010 * 300.00222 * 13 12 11 37 37 H 1.09005 * 109.46673 * 60.00219 * 13 12 11 38 38 H 0.96992 * 119.99941 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.50782 * 181.44512 * 22 11 10 40 40 H 1.08996 * 109.54456 * 61.33652 * 22 11 10 41 41 H 1.08992 * 109.50574 * 296.91367 * 23 22 11 42 42 H 1.09009 * 109.53869 * 176.80976 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5805 1.1973 -0.0049 5 6 4.2717 0.0000 0.0011 6 6 3.5807 -1.1970 0.0065 7 6 2.1981 -1.1970 0.0060 8 6 1.4446 -2.5021 0.0119 9 1 0.5333 -2.3989 -0.5772 10 6 1.0839 -2.8775 1.4517 11 7 0.4174 -4.1879 1.4586 12 6 0.0031 -4.5605 2.8178 13 6 1.2251 -4.5724 3.7383 14 6 0.8001 -4.9554 5.1325 15 1 -0.2379 -5.1685 5.3413 16 6 1.7362 -5.0326 6.1418 17 7 3.0001 -4.7726 5.8878 18 14 1.2092 -5.5065 7.8702 19 1 0.5941 -6.8580 7.8471 20 1 2.3954 -5.5182 8.7636 21 1 0.2194 -4.5207 8.3737 22 6 1.2872 -5.2177 0.8720 23 6 1.6459 -4.8188 -0.5620 24 8 2.2642 -3.5293 -0.5522 25 1 -0.3633 0.0051 1.0277 26 1 -0.3633 0.8874 -0.5183 27 1 -0.3634 -0.8925 -0.5094 28 1 1.6583 2.1326 -0.0004 29 1 4.1205 2.1326 -0.0088 30 1 5.3517 0.0000 0.0019 31 1 4.1206 -2.1323 0.0116 32 1 1.9915 -2.9276 2.0530 33 1 0.4126 -2.1255 1.8666 34 1 -0.7233 -3.8368 3.1875 35 1 -0.4487 -5.5524 2.8008 36 1 1.9514 -5.2962 3.3686 37 1 1.6768 -3.5805 3.7553 38 1 3.6587 -4.8273 6.5977 39 1 0.7644 -6.1741 0.8638 40 1 2.1982 -5.3060 1.4639 41 1 0.7402 -4.7836 -1.1673 42 1 2.3362 -5.5504 -0.9821 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126341044.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:00 Heat of formation + Delta-G solvation = -43.836175 kcal Electronic energy + Delta-G solvation = -21640.731409 eV Core-core repulsion = 18584.356761 eV Total energy + Delta-G solvation = -3056.374648 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.28745 -39.75553 -37.38370 -34.99266 -34.31365 -33.05327 -31.70194 -30.49574 -28.29487 -27.73496 -25.66075 -25.17239 -23.66907 -22.60445 -21.57719 -20.78719 -18.67930 -17.75412 -17.53182 -16.92778 -16.62717 -16.38647 -16.05341 -15.53530 -15.41849 -15.29951 -14.85200 -14.61272 -14.42733 -14.17416 -13.98068 -13.50213 -13.24246 -13.14232 -13.00882 -12.81345 -12.70966 -12.66438 -12.33118 -12.11127 -11.95884 -11.87067 -11.56749 -11.49448 -11.19414 -10.72886 -10.59073 -9.69160 -9.50096 -9.27712 -8.24674 -6.37910 0.38992 0.49328 1.36712 1.40084 1.48081 2.36574 2.65830 2.81907 2.99793 3.07941 3.80192 3.89747 3.93310 4.01144 4.11575 4.13720 4.21037 4.24656 4.36178 4.46496 4.51955 4.55137 4.66383 4.72078 4.79654 4.84678 4.86025 4.88980 4.90611 4.98402 5.05006 5.16682 5.32644 5.41215 5.47648 5.55419 5.61908 5.66073 5.70486 5.90212 6.02494 6.11630 6.22098 6.23798 6.79543 7.32172 8.86506 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017722 B = 0.004744 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.572112 B = 5900.766563 C = 6510.486640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.084 4.084 3 C -0.127 4.127 4 C -0.118 4.118 5 C -0.139 4.139 6 C -0.112 4.112 7 C -0.103 4.103 8 C 0.145 3.855 9 H 0.090 0.910 10 C 0.037 3.963 11 N -0.527 5.527 12 C 0.070 3.930 13 C 0.003 3.997 14 C -0.543 4.543 15 H 0.065 0.935 16 C 0.000 4.000 17 N -0.935 5.935 18 Si 0.967 3.033 19 H -0.264 1.264 20 H -0.285 1.285 21 H -0.265 1.265 22 C 0.011 3.989 23 C 0.070 3.930 24 O -0.396 6.396 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.151 0.849 29 H 0.149 0.851 30 H 0.136 0.864 31 H 0.110 0.890 32 H 0.012 0.988 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.073 0.927 36 H -0.013 1.013 37 H -0.013 1.013 38 H 0.263 0.737 39 H 0.097 0.903 40 H 0.015 0.985 41 H 0.076 0.924 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.443 9.237 -15.145 18.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.084 4.084 3 C -0.144 4.144 4 C -0.135 4.135 5 C -0.157 4.157 6 C -0.130 4.130 7 C -0.104 4.104 8 C 0.087 3.913 9 H 0.108 0.892 10 C -0.091 4.091 11 N -0.250 5.250 12 C -0.057 4.057 13 C -0.036 4.036 14 C -0.582 4.582 15 H 0.083 0.917 16 C -0.198 4.198 17 N -0.575 5.575 18 Si 0.791 3.209 19 H -0.189 1.189 20 H -0.210 1.210 21 H -0.190 1.190 22 C -0.117 4.117 23 C -0.006 4.006 24 O -0.315 6.315 25 H 0.091 0.909 26 H 0.109 0.891 27 H 0.089 0.911 28 H 0.168 0.832 29 H 0.167 0.833 30 H 0.154 0.846 31 H 0.128 0.872 32 H 0.031 0.969 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.005 0.995 37 H 0.005 0.995 38 H 0.072 0.928 39 H 0.115 0.885 40 H 0.033 0.967 41 H 0.095 0.905 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.537 9.302 -15.445 18.374 hybrid contribution 0.962 -0.694 1.925 2.261 sum -2.576 8.608 -13.520 16.234 Atomic orbital electron populations 1.20939 0.89630 1.03996 1.02969 1.19979 0.97351 0.92041 0.99070 1.21339 0.94576 0.97819 1.00712 1.21504 0.94659 0.98570 0.98795 1.21397 1.00873 0.92353 1.01084 1.21077 0.94121 0.98726 0.99104 1.19576 0.94172 0.93443 1.03159 1.20877 0.92864 0.85286 0.92241 0.89222 1.22606 0.97374 0.92428 0.96734 1.62709 1.39263 1.02066 1.21005 1.22128 0.97004 1.00821 0.85792 1.19495 0.94517 0.94540 0.95018 1.21583 0.94773 1.46778 0.95027 0.91654 1.26024 0.94779 0.95032 1.03946 1.70116 1.02537 1.50248 1.34624 0.85467 0.77758 0.79370 0.78272 1.18875 1.21002 1.18965 1.22864 0.95668 0.96621 0.96597 1.22811 0.99376 0.84213 0.94217 1.87917 1.43790 1.18008 1.81820 0.90948 0.89145 0.91144 0.83177 0.83286 0.84598 0.87154 0.96934 0.89875 0.91268 0.90881 0.99458 0.99457 0.92830 0.88469 0.96653 0.90539 0.86428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 9.42 71.24 0.67 -1.71 16 2 C -0.08 -2.13 5.88 -19.86 -0.12 -2.25 16 3 C -0.13 -2.75 9.70 22.27 0.22 -2.54 16 4 C -0.12 -2.56 10.05 22.27 0.22 -2.33 16 5 C -0.14 -3.58 10.05 22.27 0.22 -3.35 16 6 C -0.11 -3.50 9.35 22.27 0.21 -3.29 16 7 C -0.10 -3.13 5.07 -19.86 -0.10 -3.24 16 8 C 0.14 4.55 2.52 29.88 0.08 4.63 16 9 H 0.09 2.51 6.16 -2.38 -0.01 2.49 16 10 C 0.04 1.39 4.39 86.31 0.38 1.76 16 11 N -0.53 -19.46 4.94 -895.21 -4.42 -23.88 16 12 C 0.07 2.98 5.32 86.30 0.46 3.44 16 13 C 0.00 0.14 4.26 29.85 0.13 0.27 16 14 C -0.54 -31.30 9.11 25.60 0.23 -31.06 16 15 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 16 C 0.00 0.00 5.46 84.65 0.46 0.46 16 17 N -0.94 -58.49 13.29 21.45 0.28 -58.20 16 18 Si 0.97 44.68 29.54 68.60 2.03 46.71 16 19 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 22 C 0.01 0.38 5.33 86.32 0.46 0.84 16 23 C 0.07 1.94 7.01 72.02 0.50 2.45 16 24 O -0.40 -12.97 9.31 -148.98 -1.39 -14.35 16 25 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.09 1.33 8.09 -2.39 -0.02 1.31 16 27 H 0.07 1.40 6.03 -2.39 -0.01 1.39 16 28 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 29 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 30 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 31 H 0.11 3.71 7.35 -2.91 -0.02 3.69 16 32 H 0.01 0.57 6.40 -2.39 -0.02 0.56 16 33 H 0.08 2.98 7.96 -2.38 -0.02 2.96 16 34 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.07 2.97 8.11 -2.38 -0.02 2.95 16 36 H -0.01 -0.77 6.61 -2.39 -0.02 -0.78 16 37 H -0.01 -0.77 6.42 -2.38 -0.02 -0.79 16 38 H 0.26 15.50 8.31 -92.71 -0.77 14.72 16 39 H 0.10 2.98 8.12 -2.39 -0.02 2.96 16 40 H 0.02 0.64 6.59 -2.39 -0.02 0.62 16 41 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.12 2.68 8.14 -2.38 -0.02 2.66 16 Total: -1.00 -69.47 331.94 1.52 -67.95 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.99 Total: 17.69 kcal Atomic # 6 Polarization: -39.95 SS G_CDS: 4.03 Total: -35.92 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -4.13 Total: -82.08 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -1.39 Total: -14.35 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -69.47 1.52 -67.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126341044.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.116 kcal (2) G-P(sol) polarization free energy of solvation -69.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds