Wall clock time and date at job start Mon Mar 30 2020 02:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38253 * 119.99886 * 2 1 4 4 C 1.38220 * 120.00046 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99681 * 0.05260 * 4 3 2 6 6 C 1.38208 * 120.00357 * 359.97438 * 5 4 3 7 7 C 1.38204 * 120.00247 * 180.02562 * 2 1 3 8 8 C 1.50708 * 119.99847 * 359.97117 * 7 2 1 9 9 H 1.08995 * 109.50890 * 324.93954 * 8 7 2 10 10 C 1.53096 * 109.50459 * 85.02481 * 8 7 2 11 11 N 1.47018 * 109.26040 * 176.78389 * 10 8 7 12 12 C 1.46893 * 111.00200 * 177.60578 * 11 10 8 13 13 C 1.53003 * 109.46921 * 169.99901 * 12 11 10 14 14 C 1.50698 * 109.47002 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00356 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00158 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99999 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00325 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47030 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.47160 * 119.99994 * 18 16 14 21 21 H 1.48500 * 109.47061 * 240.00004 * 18 16 14 22 22 C 1.47017 * 110.75074 * 301.38644 * 11 10 8 23 23 C 1.53097 * 109.25852 * 58.61220 * 22 11 10 24 24 O 1.43012 * 109.50591 * 204.80746 * 8 7 2 25 25 H 1.09000 * 109.46827 * 269.92747 * 1 2 3 26 26 H 1.09003 * 109.47455 * 29.92455 * 1 2 3 27 27 H 1.09001 * 109.47297 * 149.93420 * 1 2 3 28 28 H 1.08002 * 120.00347 * 0.04773 * 3 2 1 29 29 H 1.08000 * 119.99660 * 180.32192 * 4 3 2 30 30 H 1.08000 * 119.99329 * 179.97438 * 5 4 3 31 31 H 1.07992 * 120.00441 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.50767 * 296.72065 * 10 8 7 33 33 H 1.09003 * 109.50837 * 56.80752 * 10 8 7 34 34 H 1.08998 * 109.47529 * 290.00225 * 12 11 10 35 35 H 1.09002 * 109.47080 * 50.00129 * 12 11 10 36 36 H 1.08995 * 109.47334 * 299.99944 * 13 12 11 37 37 H 1.08996 * 109.47171 * 60.00628 * 13 12 11 38 38 H 0.96998 * 120.00171 * 180.02562 * 17 16 14 39 39 H 1.08992 * 109.50449 * 178.54815 * 22 11 10 40 40 H 1.09001 * 109.50671 * 298.63443 * 22 11 10 41 41 H 1.08993 * 109.50777 * 63.08602 * 23 22 11 42 42 H 1.08998 * 109.50648 * 183.17469 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2717 0.0000 0.0000 6 6 3.5807 -1.1969 -0.0006 7 6 2.1981 -1.1969 -0.0005 8 6 1.4446 -2.5020 -0.0005 9 1 0.5345 -2.3969 0.5901 10 6 1.0800 -2.8819 -1.4380 11 7 0.4135 -4.1923 -1.4393 12 6 -0.0045 -4.5691 -2.7961 13 6 -0.4633 -6.0287 -2.8015 14 6 -0.8916 -6.4155 -4.1936 15 1 -0.8420 -5.6924 -4.9944 16 6 -1.3479 -7.6920 -4.4449 17 7 -1.4098 -8.5721 -3.4695 18 14 -1.8794 -8.1713 -6.1703 19 1 -1.7148 -7.0090 -7.0798 20 1 -1.0408 -9.2983 -6.6515 21 1 -3.3047 -8.5877 -6.1515 22 6 1.2849 -5.2204 -0.8518 23 6 1.6475 -4.8171 0.5799 24 8 2.2658 -3.5275 0.5646 25 1 -0.3633 -0.0013 1.0277 26 1 -0.3634 0.8907 -0.5127 27 1 -0.3634 -0.8894 -0.5149 28 1 1.6583 2.1327 0.0008 29 1 4.1204 2.1327 0.0058 30 1 5.3517 0.0001 0.0000 31 1 4.1206 -2.1322 -0.0006 32 1 0.4076 -2.1312 -1.8535 33 1 1.9860 -2.9331 -2.0419 34 1 -0.8271 -3.9285 -3.1140 35 1 0.8348 -4.4496 -3.4812 36 1 0.3592 -6.6693 -2.4837 37 1 -1.3026 -6.1483 -2.1165 38 1 -1.7304 -9.4703 -3.6464 39 1 0.7622 -6.1767 -0.8392 40 1 2.1940 -5.3103 -1.4465 41 1 0.7434 -4.7800 1.1876 42 1 2.3386 -5.5478 1.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126341255.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:04 Heat of formation + Delta-G solvation = -24.569001 kcal Electronic energy + Delta-G solvation = -21264.031734 eV Core-core repulsion = 18208.492574 eV Total energy + Delta-G solvation = -3055.539160 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.18281 -38.65010 -35.81461 -33.46491 -32.93120 -32.11583 -29.92310 -29.50592 -27.10414 -26.47540 -24.21808 -23.62354 -22.24177 -21.25613 -20.28642 -19.60419 -16.93483 -16.50267 -16.27746 -15.65471 -15.26370 -14.74252 -14.68726 -14.41925 -14.33150 -14.21533 -13.64177 -13.41791 -13.15065 -12.80269 -12.50528 -12.24969 -12.18074 -12.08166 -11.59796 -11.38604 -11.07201 -11.04634 -10.97845 -10.79887 -10.52325 -10.33077 -9.99161 -9.62377 -9.35027 -9.12486 -8.81942 -8.58908 -8.38762 -7.82937 -6.04281 -4.06601 1.24478 1.34810 3.28899 3.36470 3.40529 3.62586 3.84603 4.27778 4.47227 4.76285 4.80936 4.91225 5.00776 5.13412 5.20710 5.28828 5.31931 5.36585 5.46987 5.53538 5.56148 5.62632 5.66059 5.74340 5.81364 5.97066 6.02369 6.09269 6.17770 6.27048 6.37010 6.40651 6.42109 6.46730 6.60256 6.85849 6.94255 7.30867 7.37761 7.49719 7.68940 7.79555 7.98811 8.38083 8.99895 9.57496 11.07153 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029936 B = 0.003581 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.102066 B = 7817.787675 C = 8172.857592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.075 4.075 3 C -0.124 4.124 4 C -0.119 4.119 5 C -0.131 4.131 6 C -0.089 4.089 7 C -0.079 4.079 8 C 0.136 3.864 9 H 0.076 0.924 10 C 0.030 3.970 11 N -0.537 5.537 12 C 0.062 3.938 13 C 0.021 3.979 14 C -0.522 4.522 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.014 3.986 23 C 0.065 3.935 24 O -0.384 6.384 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.129 0.871 32 H 0.081 0.919 33 H 0.038 0.962 34 H 0.064 0.936 35 H 0.021 0.979 36 H 0.020 0.980 37 H 0.025 0.975 38 H 0.260 0.740 39 H 0.103 0.897 40 H 0.037 0.963 41 H 0.058 0.942 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.049 16.737 9.288 20.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.075 4.075 3 C -0.142 4.142 4 C -0.137 4.137 5 C -0.149 4.149 6 C -0.107 4.107 7 C -0.079 4.079 8 C 0.078 3.922 9 H 0.094 0.906 10 C -0.099 4.099 11 N -0.262 5.262 12 C -0.064 4.064 13 C -0.016 4.016 14 C -0.560 4.560 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.114 4.114 23 C -0.012 4.012 24 O -0.303 6.303 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.139 0.861 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.147 0.853 32 H 0.099 0.901 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.039 0.961 36 H 0.038 0.962 37 H 0.044 0.956 38 H 0.070 0.930 39 H 0.122 0.878 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.751 16.620 9.674 20.734 hybrid contribution 0.230 -0.499 -1.623 1.714 sum 7.981 16.121 8.051 19.708 Atomic orbital electron populations 1.20941 0.91059 1.03437 1.02655 1.19693 0.96144 0.92249 0.99379 1.20953 0.94240 0.97178 1.01850 1.21121 0.94320 0.97959 1.00327 1.21138 0.99812 0.92504 1.01425 1.21032 0.93643 0.98390 0.97684 1.19513 0.94014 0.93027 1.01385 1.20846 0.92442 0.85011 0.93902 0.90636 1.22701 0.98036 0.93406 0.95725 1.62377 1.38949 1.01005 1.23906 1.22358 0.98125 1.00833 0.85107 1.19236 0.96863 0.88189 0.97312 1.21206 1.43192 0.96881 0.94758 0.92679 1.24992 0.95694 0.96581 0.97048 1.69967 1.47050 1.04752 1.31495 0.86523 0.78298 0.78476 0.84637 1.19749 1.21015 1.20938 1.22867 0.96105 0.97668 0.94768 1.22740 0.98056 0.83936 0.96444 1.87896 1.42697 1.17540 1.82139 0.90957 0.91381 0.90614 0.86082 0.86296 0.86210 0.85346 0.90055 0.94387 0.91739 0.96053 0.96170 0.95634 0.93000 0.87842 0.94457 0.92377 0.88578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 9.22 36.01 0.33 -0.91 16 2 C -0.07 -0.87 5.88 -104.63 -0.62 -1.48 16 3 C -0.12 -1.28 9.70 -39.58 -0.38 -1.67 16 4 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 5 C -0.13 -1.41 10.05 -39.59 -0.40 -1.81 16 6 C -0.09 -1.14 9.35 -39.58 -0.37 -1.51 16 7 C -0.08 -1.04 5.07 -104.62 -0.53 -1.57 16 8 C 0.14 1.95 2.32 -27.83 -0.06 1.89 16 9 H 0.08 1.07 7.00 -51.93 -0.36 0.71 16 10 C 0.03 0.47 4.73 -3.71 -0.02 0.46 16 11 N -0.54 -9.90 4.88 -234.31 -1.14 -11.04 16 12 C 0.06 1.32 5.22 -3.83 -0.02 1.30 16 13 C 0.02 0.54 4.24 -27.88 -0.12 0.42 16 14 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 15 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 18 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C 0.01 0.25 4.94 -3.71 -0.02 0.23 16 23 C 0.06 0.95 7.01 37.21 0.26 1.21 16 24 O -0.38 -5.85 9.30 -35.23 -0.33 -6.18 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 27 H 0.08 0.83 5.41 -51.93 -0.28 0.54 16 28 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 29 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 31 H 0.13 1.66 7.35 -52.49 -0.39 1.28 16 32 H 0.08 1.21 6.85 -51.93 -0.36 0.86 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.02 0.46 8.08 -51.93 -0.42 0.04 16 36 H 0.02 0.54 6.28 -51.93 -0.33 0.21 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.10 1.99 6.05 -51.93 -0.31 1.68 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 332.97 15.07 5.02 5.02 Total: -1.00 -30.37 332.97 -10.12 -40.50 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -6.63 Total: -0.56 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -2.75 Total: -18.47 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: -0.41 Total: -36.84 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.33 Total: -6.18 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.37 -10.12 -40.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126341255.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.926 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds