Wall clock time and date at job start Mon Mar 30 2020 02:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38253 * 119.99886 * 2 1 4 4 C 1.38220 * 120.00046 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99681 * 0.05260 * 4 3 2 6 6 C 1.38208 * 120.00357 * 359.97438 * 5 4 3 7 7 C 1.38204 * 120.00247 * 180.02562 * 2 1 3 8 8 C 1.50708 * 119.99847 * 359.97117 * 7 2 1 9 9 H 1.08995 * 109.50890 * 324.93954 * 8 7 2 10 10 C 1.53096 * 109.50459 * 85.02481 * 8 7 2 11 11 N 1.47018 * 109.26040 * 176.78389 * 10 8 7 12 12 C 1.46893 * 111.00200 * 177.60578 * 11 10 8 13 13 C 1.53003 * 109.46921 * 169.99901 * 12 11 10 14 14 C 1.50698 * 109.47002 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00356 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00158 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99999 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00325 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47030 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.47160 * 119.99994 * 18 16 14 21 21 H 1.48500 * 109.47061 * 240.00004 * 18 16 14 22 22 C 1.47017 * 110.75074 * 301.38644 * 11 10 8 23 23 C 1.53097 * 109.25852 * 58.61220 * 22 11 10 24 24 O 1.43012 * 109.50591 * 204.80746 * 8 7 2 25 25 H 1.09000 * 109.46827 * 269.92747 * 1 2 3 26 26 H 1.09003 * 109.47455 * 29.92455 * 1 2 3 27 27 H 1.09001 * 109.47297 * 149.93420 * 1 2 3 28 28 H 1.08002 * 120.00347 * 0.04773 * 3 2 1 29 29 H 1.08000 * 119.99660 * 180.32192 * 4 3 2 30 30 H 1.08000 * 119.99329 * 179.97438 * 5 4 3 31 31 H 1.07992 * 120.00441 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.50767 * 296.72065 * 10 8 7 33 33 H 1.09003 * 109.50837 * 56.80752 * 10 8 7 34 34 H 1.08998 * 109.47529 * 290.00225 * 12 11 10 35 35 H 1.09002 * 109.47080 * 50.00129 * 12 11 10 36 36 H 1.08995 * 109.47334 * 299.99944 * 13 12 11 37 37 H 1.08996 * 109.47171 * 60.00628 * 13 12 11 38 38 H 0.96998 * 120.00171 * 180.02562 * 17 16 14 39 39 H 1.08992 * 109.50449 * 178.54815 * 22 11 10 40 40 H 1.09001 * 109.50671 * 298.63443 * 22 11 10 41 41 H 1.08993 * 109.50777 * 63.08602 * 23 22 11 42 42 H 1.08998 * 109.50648 * 183.17469 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2717 0.0000 0.0000 6 6 3.5807 -1.1969 -0.0006 7 6 2.1981 -1.1969 -0.0005 8 6 1.4446 -2.5020 -0.0005 9 1 0.5345 -2.3969 0.5901 10 6 1.0800 -2.8819 -1.4380 11 7 0.4135 -4.1923 -1.4393 12 6 -0.0045 -4.5691 -2.7961 13 6 -0.4633 -6.0287 -2.8015 14 6 -0.8916 -6.4155 -4.1936 15 1 -0.8420 -5.6924 -4.9944 16 6 -1.3479 -7.6920 -4.4449 17 7 -1.4098 -8.5721 -3.4695 18 14 -1.8794 -8.1713 -6.1703 19 1 -1.7148 -7.0090 -7.0798 20 1 -1.0408 -9.2983 -6.6515 21 1 -3.3047 -8.5877 -6.1515 22 6 1.2849 -5.2204 -0.8518 23 6 1.6475 -4.8171 0.5799 24 8 2.2658 -3.5275 0.5646 25 1 -0.3633 -0.0013 1.0277 26 1 -0.3634 0.8907 -0.5127 27 1 -0.3634 -0.8894 -0.5149 28 1 1.6583 2.1327 0.0008 29 1 4.1204 2.1327 0.0058 30 1 5.3517 0.0001 0.0000 31 1 4.1206 -2.1322 -0.0006 32 1 0.4076 -2.1312 -1.8535 33 1 1.9860 -2.9331 -2.0419 34 1 -0.8271 -3.9285 -3.1140 35 1 0.8348 -4.4496 -3.4812 36 1 0.3592 -6.6693 -2.4837 37 1 -1.3026 -6.1483 -2.1165 38 1 -1.7304 -9.4703 -3.6464 39 1 0.7622 -6.1767 -0.8392 40 1 2.1940 -5.3103 -1.4465 41 1 0.7434 -4.7800 1.1876 42 1 2.3386 -5.5478 1.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126341255.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:03 Heat of formation + Delta-G solvation = -42.381814 kcal Electronic energy + Delta-G solvation = -21264.804156 eV Core-core repulsion = 18208.492574 eV Total energy + Delta-G solvation = -3056.311582 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.27805 -39.73881 -37.32437 -35.05994 -34.33318 -33.05613 -31.80190 -30.62844 -28.26328 -27.72521 -25.82715 -25.04763 -23.43737 -22.43107 -21.39875 -21.15105 -18.71492 -17.73721 -17.44215 -16.96971 -16.61555 -16.25981 -16.14442 -15.85086 -15.42052 -15.25323 -14.92235 -14.61769 -14.36730 -14.11448 -13.96884 -13.57810 -13.37481 -13.08427 -13.00069 -12.86686 -12.69089 -12.50576 -12.43658 -12.01359 -11.95820 -11.81755 -11.58455 -11.26773 -11.24499 -10.72827 -10.57035 -9.69417 -9.48904 -9.37193 -8.22776 -6.33820 0.38475 0.50298 1.39262 1.39539 1.52783 2.38175 2.62059 2.80358 2.95492 3.10899 3.77255 3.87994 3.94934 3.99367 4.09000 4.12224 4.18869 4.23821 4.33055 4.44512 4.48142 4.54548 4.61690 4.68642 4.75966 4.81437 4.85513 4.87594 4.92687 4.97164 5.00557 5.16815 5.32678 5.40143 5.56229 5.58680 5.63207 5.70609 5.72975 5.94642 6.05455 6.11229 6.19036 6.25612 6.81773 7.35253 8.89283 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029936 B = 0.003581 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.102066 B = 7817.787675 C = 8172.857592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.083 4.083 3 C -0.126 4.126 4 C -0.116 4.116 5 C -0.136 4.136 6 C -0.108 4.108 7 C -0.101 4.101 8 C 0.143 3.857 9 H 0.078 0.922 10 C 0.035 3.965 11 N -0.541 5.541 12 C 0.077 3.923 13 C 0.032 3.968 14 C -0.546 4.546 15 H 0.058 0.942 16 C 0.003 3.997 17 N -0.929 5.929 18 Si 0.966 3.034 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.277 1.277 22 C 0.016 3.984 23 C 0.072 3.928 24 O -0.389 6.389 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.061 0.939 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.139 0.861 31 H 0.117 0.883 32 H 0.091 0.909 33 H 0.027 0.973 34 H 0.068 0.932 35 H 0.017 0.983 36 H 0.002 0.998 37 H -0.002 1.002 38 H 0.264 0.736 39 H 0.080 0.920 40 H 0.027 0.973 41 H 0.064 0.936 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.351 18.816 9.035 22.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.083 4.083 3 C -0.144 4.144 4 C -0.134 4.134 5 C -0.154 4.154 6 C -0.126 4.126 7 C -0.102 4.102 8 C 0.085 3.915 9 H 0.095 0.905 10 C -0.093 4.093 11 N -0.266 5.266 12 C -0.050 4.050 13 C -0.006 4.006 14 C -0.584 4.584 15 H 0.076 0.924 16 C -0.195 4.195 17 N -0.569 5.569 18 Si 0.790 3.210 19 H -0.187 1.187 20 H -0.204 1.204 21 H -0.202 1.202 22 C -0.112 4.112 23 C -0.005 4.005 24 O -0.308 6.308 25 H 0.099 0.901 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.165 0.835 29 H 0.166 0.834 30 H 0.157 0.843 31 H 0.135 0.865 32 H 0.110 0.890 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.035 0.965 36 H 0.020 0.980 37 H 0.016 0.984 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.045 0.955 41 H 0.082 0.918 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.060 18.715 9.430 22.453 hybrid contribution 0.172 -1.095 -1.500 1.865 sum 8.232 17.621 7.930 21.004 Atomic orbital electron populations 1.20956 0.90117 1.03617 1.03262 1.19931 0.97003 0.92207 0.99165 1.21312 0.94684 0.97646 1.00767 1.21514 0.94478 0.98771 0.98659 1.21405 1.00950 0.92159 1.00855 1.21085 0.93699 0.98925 0.98905 1.19509 0.94309 0.92833 1.03518 1.20815 0.92755 0.85537 0.92424 0.90457 1.22738 0.97430 0.91961 0.97152 1.62342 1.39969 1.02374 1.21939 1.22037 0.98023 0.98084 0.86849 1.19041 0.95086 0.90724 0.95721 1.21619 1.43547 0.97434 0.95820 0.92366 1.25928 0.95539 0.96499 1.01525 1.70091 1.47701 1.05233 1.33854 0.85388 0.77989 0.78342 0.79259 1.18726 1.20353 1.20209 1.22831 0.95037 0.96658 0.96707 1.22755 0.99049 0.84410 0.94257 1.87907 1.43148 1.17712 1.82041 0.90109 0.89599 0.92001 0.83506 0.83376 0.84277 0.86478 0.89029 0.95495 0.91358 0.96487 0.97983 0.98403 0.92674 0.90138 0.95489 0.91768 0.86193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 9.22 71.24 0.66 -1.57 16 2 C -0.08 -1.79 5.88 -19.87 -0.12 -1.90 16 3 C -0.13 -2.24 9.70 22.27 0.22 -2.02 16 4 C -0.12 -1.97 10.05 22.27 0.22 -1.75 16 5 C -0.14 -2.68 10.05 22.27 0.22 -2.46 16 6 C -0.11 -2.69 9.35 22.27 0.21 -2.48 16 7 C -0.10 -2.60 5.07 -19.86 -0.10 -2.70 16 8 C 0.14 4.06 2.32 29.88 0.07 4.13 16 9 H 0.08 2.16 7.00 -2.39 -0.02 2.14 16 10 C 0.04 1.13 4.73 86.31 0.41 1.54 16 11 N -0.54 -20.41 4.88 -895.22 -4.36 -24.78 16 12 C 0.08 3.37 5.22 86.31 0.45 3.82 16 13 C 0.03 1.68 4.24 29.85 0.13 1.81 16 14 C -0.55 -31.29 9.11 25.60 0.23 -31.06 16 15 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 16 C 0.00 0.19 5.46 84.65 0.46 0.65 16 17 N -0.93 -56.23 13.29 21.45 0.28 -55.94 16 18 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 19 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 C 0.02 0.58 4.94 86.31 0.43 1.01 16 23 C 0.07 2.10 7.01 72.01 0.50 2.60 16 24 O -0.39 -11.79 9.30 -148.98 -1.39 -13.18 16 25 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.09 1.22 8.09 -2.39 -0.02 1.20 16 27 H 0.06 1.29 5.41 -2.39 -0.01 1.27 16 28 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 29 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 30 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 31 H 0.12 3.07 7.35 -2.91 -0.02 3.05 16 32 H 0.09 2.71 6.85 -2.39 -0.02 2.69 16 33 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 35 H 0.02 0.75 8.08 -2.39 -0.02 0.73 16 36 H 0.00 0.11 6.28 -2.39 -0.01 0.09 16 37 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 38 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 39 H 0.08 3.28 6.05 -2.39 -0.01 3.27 16 40 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -65.79 332.97 1.54 -64.25 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.99 Total: 13.71 kcal Atomic # 6 Polarization: -34.38 SS G_CDS: 3.99 Total: -30.38 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: -4.08 Total: -80.72 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -1.39 Total: -13.18 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -65.79 1.54 -64.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126341255.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.871 kcal (2) G-P(sol) polarization free energy of solvation -65.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds