Wall clock time and date at job start Mon Mar 30 2020 01:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99670 * 2 1 4 4 H 1.48499 * 109.46939 * 269.99408 * 3 2 1 5 5 H 1.48498 * 109.47127 * 29.99426 * 3 2 1 6 6 H 1.48502 * 109.46766 * 149.99672 * 3 2 1 7 7 C 1.37876 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00144 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00175 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47374 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00096 * 189.99815 * 10 9 7 12 12 C 1.50700 * 109.46841 * 75.66927 * 11 10 9 13 13 C 1.38230 * 120.00381 * 84.50842 * 12 11 10 14 14 C 1.38236 * 120.00280 * 179.97438 * 13 12 11 15 15 C 1.38229 * 119.99859 * 0.09545 * 14 13 12 16 16 C 1.38231 * 120.00121 * 359.86159 * 15 14 13 17 17 C 1.38235 * 119.99747 * 264.49064 * 12 11 10 18 18 C 1.46900 * 110.99840 * 66.04542 * 10 9 7 19 19 C 1.52995 * 109.47142 * 199.62961 * 18 10 9 20 20 H 1.08998 * 110.43835 * 301.79552 * 19 18 10 21 21 C 1.54817 * 110.48959 * 179.11120 * 19 18 10 22 22 C 1.54991 * 102.09336 * 220.44753 * 21 19 18 23 23 O 1.44379 * 103.49387 * 37.01683 * 22 21 19 24 24 C 1.43738 * 106.97522 * 319.94409 * 23 22 21 25 25 H 0.97000 * 120.00723 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46749 * 59.99636 * 9 7 2 27 27 H 1.08999 * 109.47020 * 300.00114 * 9 7 2 28 28 H 1.09002 * 109.47170 * 315.67094 * 11 10 9 29 29 H 1.09000 * 109.47173 * 195.66365 * 11 10 9 30 30 H 1.08012 * 119.99726 * 359.70014 * 13 12 11 31 31 H 1.08000 * 119.99852 * 179.97438 * 14 13 12 32 32 H 1.08008 * 119.99735 * 179.97438 * 15 14 13 33 33 H 1.08004 * 119.99486 * 180.02562 * 16 15 14 34 34 H 1.08000 * 120.00299 * 359.97438 * 17 12 11 35 35 H 1.09004 * 109.47145 * 319.63343 * 18 10 9 36 36 H 1.09007 * 109.47197 * 79.62803 * 18 10 9 37 37 H 1.09004 * 110.90755 * 338.64144 * 21 19 18 38 38 H 1.09003 * 110.90839 * 102.24225 * 21 19 18 39 39 H 1.09011 * 110.61392 * 278.51917 * 22 21 19 40 40 H 1.09003 * 110.61974 * 155.52803 * 22 21 19 41 41 H 1.08999 * 109.87868 * 267.08597 * 24 23 22 42 42 H 1.09007 * 110.00091 * 146.00186 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2058 -3.6157 0.0005 11 6 1.5213 -4.8935 -0.2376 12 6 1.1613 -5.0062 -1.6966 13 6 2.0921 -5.4764 -2.6039 14 6 1.7616 -5.5803 -3.9422 15 6 0.5010 -5.2121 -4.3734 16 6 -0.4302 -4.7428 -3.4659 17 6 -0.1000 -4.6398 -2.1275 18 6 2.9711 -3.6540 1.2539 19 6 4.2474 -4.4720 1.0473 20 1 4.0030 -5.4824 0.7197 21 6 5.0840 -4.5090 2.3494 22 6 6.5290 -4.3517 1.8115 23 8 6.3809 -3.4258 0.7137 24 6 5.1708 -3.7819 0.0247 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5568 0.8903 28 1 0.6141 -4.9376 0.3650 29 1 2.1812 -5.7161 0.0384 30 1 3.0791 -5.7584 -2.2679 31 1 2.4891 -5.9472 -4.6511 32 1 0.2429 -5.2929 -5.4190 33 1 -1.4153 -4.4555 -3.8028 34 1 -0.8276 -4.2731 -1.4185 35 1 3.2342 -2.6385 1.5500 36 1 2.3664 -4.1150 2.0349 37 1 4.8205 -3.6788 3.0048 38 1 4.9617 -5.4624 2.8634 39 1 6.9130 -5.3086 1.4575 40 1 7.1813 -3.9357 2.5794 41 1 5.3972 -4.4675 -0.7919 42 1 4.6871 -2.8867 -0.3664 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133538080.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:44 Heat of formation + Delta-G solvation = -23.033635 kcal Electronic energy + Delta-G solvation = -21692.310335 eV Core-core repulsion = 18636.837753 eV Total energy + Delta-G solvation = -3055.472582 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.34383 -38.76138 -36.43950 -32.77698 -32.37401 -30.81329 -30.47875 -29.01780 -27.21538 -25.51256 -23.82747 -22.48947 -22.06769 -21.25101 -20.46078 -19.38897 -16.57290 -16.34282 -16.18017 -15.71245 -15.01848 -14.82698 -14.60558 -14.43562 -14.32193 -13.65796 -13.25560 -13.01163 -12.65959 -12.57819 -12.12971 -12.06659 -11.86739 -11.49606 -11.38309 -11.19628 -10.93476 -10.67841 -10.66736 -10.64606 -10.54619 -10.37312 -10.02811 -9.76913 -9.33863 -9.12918 -8.50055 -8.39644 -8.29328 -7.29761 -6.01744 -4.02326 1.78128 1.83428 3.34125 3.40139 3.44791 4.15680 4.28157 4.45539 4.74801 4.98419 5.16722 5.20792 5.23704 5.31577 5.34579 5.40115 5.46574 5.52657 5.59253 5.71802 5.83109 5.88026 5.89778 5.98697 6.04180 6.07233 6.13709 6.20309 6.36881 6.42546 6.46750 6.61733 6.74133 6.85547 6.89858 7.09779 7.22531 7.28700 7.33351 7.43221 7.81066 8.08799 8.18024 8.52689 9.04994 9.61837 11.09006 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.009405 B = 0.008292 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2976.360302 B = 3375.897588 C = 5542.957130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.192 3.808 10 N -0.530 5.530 11 C 0.088 3.912 12 C -0.058 4.058 13 C -0.101 4.101 14 C -0.128 4.128 15 C -0.130 4.130 16 C -0.122 4.122 17 C -0.103 4.103 18 C 0.069 3.931 19 C -0.114 4.114 20 H 0.072 0.928 21 C -0.152 4.152 22 C 0.047 3.953 23 O -0.384 6.384 24 C 0.059 3.941 25 H 0.260 0.740 26 H 0.038 0.962 27 H -0.012 1.012 28 H 0.034 0.966 29 H 0.067 0.933 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.092 0.908 36 H 0.022 0.978 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.085 0.915 41 H 0.048 0.952 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.983 -12.805 -0.764 13.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.544 4.544 8 H 0.082 0.918 9 C 0.067 3.933 10 N -0.254 5.254 11 C -0.040 4.040 12 C -0.058 4.058 13 C -0.120 4.120 14 C -0.146 4.146 15 C -0.148 4.148 16 C -0.140 4.140 17 C -0.122 4.122 18 C -0.059 4.059 19 C -0.133 4.133 20 H 0.091 0.909 21 C -0.190 4.190 22 C -0.030 4.030 23 O -0.303 6.303 24 C -0.017 4.017 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.006 0.994 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.110 0.890 36 H 0.040 0.960 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.066 0.934 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.289 -12.418 -1.192 13.550 hybrid contribution -0.433 0.691 0.617 1.023 sum 4.856 -11.727 -0.575 12.706 Atomic orbital electron populations 1.69950 1.06017 1.26691 1.51097 1.24949 0.94816 0.99195 0.95458 0.86563 0.79841 0.83273 0.78189 1.20652 1.21395 1.19721 1.21151 0.93453 0.89899 1.49924 0.91843 1.19794 0.90138 0.87092 0.96281 1.62102 1.27868 1.02221 1.33166 1.21044 0.97288 0.93953 0.91690 1.19798 0.93320 0.96892 0.95836 1.20900 0.98578 0.99606 0.92869 1.21026 0.96524 1.01277 0.95749 1.21012 0.94160 1.00672 0.98992 1.21058 0.99392 1.00090 0.93480 1.21113 0.96655 0.98472 0.95917 1.22061 0.92352 1.00843 0.90643 1.22555 0.96494 0.99730 0.94519 0.90915 1.23185 0.95205 1.02523 0.98089 1.23459 0.96692 0.93334 0.89503 1.88867 1.43302 1.54148 1.43986 1.23209 0.83447 1.01349 0.93681 0.93006 0.94399 0.99382 0.94790 0.91452 0.86596 0.86766 0.86857 0.86608 0.86282 0.88959 0.95951 0.90264 0.90861 0.92913 0.89652 0.93419 0.87646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -13.92 8.23 -34.44 -0.28 -14.20 16 8 H 0.06 1.74 7.16 -52.48 -0.38 1.37 16 9 C 0.19 4.82 4.55 -4.98 -0.02 4.79 16 10 N -0.53 -10.71 3.92 -237.51 -0.93 -11.64 16 11 C 0.09 1.53 4.95 -4.98 -0.02 1.51 16 12 C -0.06 -1.00 5.03 -104.63 -0.53 -1.53 16 13 C -0.10 -1.58 9.72 -39.58 -0.38 -1.97 16 14 C -0.13 -1.84 10.05 -39.59 -0.40 -2.23 16 15 C -0.13 -1.87 10.05 -39.59 -0.40 -2.26 16 16 C -0.12 -1.90 10.05 -39.58 -0.40 -2.30 16 17 C -0.10 -1.79 8.40 -39.58 -0.33 -2.13 16 18 C 0.07 1.27 3.93 -3.83 -0.02 1.25 16 19 C -0.11 -1.71 3.09 -89.09 -0.28 -1.98 16 20 H 0.07 1.00 6.78 -51.93 -0.35 0.65 16 21 C -0.15 -1.94 6.71 -24.72 -0.17 -2.11 16 22 C 0.05 0.60 7.72 38.21 0.29 0.90 16 23 O -0.38 -6.52 11.52 -35.23 -0.41 -6.93 16 24 C 0.06 0.99 7.18 37.73 0.27 1.26 16 25 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.04 1.02 6.32 -51.93 -0.33 0.70 16 27 H -0.01 -0.31 8.12 -51.93 -0.42 -0.74 16 28 H 0.03 0.60 7.91 -51.93 -0.41 0.19 16 29 H 0.07 1.01 6.48 -51.93 -0.34 0.68 16 30 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 31 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 32 H 0.11 1.33 8.06 -52.48 -0.42 0.90 16 33 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 34 H 0.12 2.11 7.99 -52.49 -0.42 1.69 16 35 H 0.09 1.94 6.58 -51.93 -0.34 1.60 16 36 H 0.02 0.39 8.00 -51.93 -0.42 -0.02 16 37 H 0.08 1.06 7.87 -51.93 -0.41 0.65 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.11 2.08 7.35 -51.92 -0.38 1.70 16 LS Contribution 338.35 15.07 5.10 5.10 Total: -1.00 -30.07 338.35 -9.99 -40.06 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.71 Total: 1.80 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -2.76 Total: -19.49 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: -0.20 Total: -37.35 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.41 Total: -6.93 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.07 -9.99 -40.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133538080.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.023 kcal (2) G-P(sol) polarization free energy of solvation -30.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds