Wall clock time and date at job start Mon Mar 30 2020 01:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 120.00315 * 2 1 4 4 H 1.48496 * 109.47432 * 239.99839 * 3 2 1 5 5 H 1.48500 * 109.47417 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47021 * 119.99753 * 3 2 1 7 7 C 1.37878 * 119.99642 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00174 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00227 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47219 * 184.89307 * 9 7 2 11 11 C 1.46896 * 110.99879 * 164.16506 * 10 9 7 12 12 C 1.50697 * 109.47178 * 201.16899 * 11 10 9 13 13 C 1.38239 * 120.00279 * 249.32237 * 12 11 10 14 14 C 1.38233 * 120.00304 * 179.78299 * 13 12 11 15 15 C 1.38239 * 119.99728 * 0.47157 * 14 13 12 16 16 C 1.38232 * 120.00048 * 359.75598 * 15 14 13 17 17 C 1.38233 * 119.99990 * 69.59636 * 12 11 10 18 18 C 1.46901 * 110.99807 * 288.11839 * 10 9 7 19 19 C 1.53002 * 109.46964 * 156.68550 * 18 10 9 20 20 H 1.09003 * 110.45772 * 54.87265 * 19 18 10 21 21 C 1.54506 * 110.51140 * 177.47823 * 19 18 10 22 22 C 1.54475 * 104.06372 * 118.64289 * 21 19 18 23 23 O 1.44421 * 104.80510 * 23.97883 * 22 21 19 24 24 C 1.44431 * 105.27301 * 319.49151 * 23 22 21 25 25 H 0.97000 * 119.99650 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46798 * 64.89295 * 9 7 2 27 27 H 1.09004 * 109.46971 * 304.89347 * 9 7 2 28 28 H 1.09005 * 109.46978 * 81.17295 * 11 10 9 29 29 H 1.08998 * 109.47579 * 321.17364 * 11 10 9 30 30 H 1.08004 * 119.99433 * 359.97438 * 13 12 11 31 31 H 1.07998 * 120.00155 * 180.25096 * 14 13 12 32 32 H 1.08000 * 119.99923 * 179.79043 * 15 14 13 33 33 H 1.08001 * 120.00462 * 180.02562 * 16 15 14 34 34 H 1.07998 * 119.99962 * 359.97438 * 17 12 11 35 35 H 1.09006 * 109.47143 * 276.68442 * 18 10 9 36 36 H 1.09001 * 109.47257 * 36.68228 * 18 10 9 37 37 H 1.08997 * 110.51475 * 237.29036 * 21 19 18 38 38 H 1.09006 * 110.51219 * 0.02562 * 21 19 18 39 39 H 1.09000 * 110.37576 * 142.81243 * 22 21 19 40 40 H 1.09002 * 110.37910 * 265.03641 * 22 21 19 41 41 H 1.09005 * 110.36516 * 281.67256 * 24 23 22 42 42 H 1.08996 * 110.37127 * 159.34370 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6962 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2012 -3.6133 0.1170 11 6 1.5127 -4.8548 0.4946 12 6 2.5036 -5.8138 1.1023 13 6 2.8602 -6.9629 0.4216 14 6 3.7725 -7.8404 0.9770 15 6 4.3209 -7.5737 2.2176 16 6 3.9608 -6.4270 2.9005 17 6 3.0517 -5.5474 2.3431 18 6 2.9612 -3.7904 -1.1276 19 6 4.2787 -4.5063 -0.8231 20 1 4.0907 -5.4442 -0.3004 21 6 5.0697 -4.7616 -2.1255 22 6 6.3846 -3.9758 -1.9262 23 8 6.5359 -3.8666 -0.4941 24 6 5.2092 -3.5965 0.0090 25 1 -0.4849 0.8401 0.0004 26 1 0.6913 -2.5956 -0.9310 27 1 0.5605 -2.5201 0.8427 28 1 1.0662 -5.3066 -0.3912 29 1 0.7316 -4.6306 1.2210 30 1 2.4283 -7.1735 -0.5457 31 1 4.0542 -8.7361 0.4434 32 1 5.0312 -8.2609 2.6531 33 1 4.3895 -6.2184 3.8696 34 1 2.7701 -4.6517 2.8767 35 1 2.3770 -4.3871 -1.8283 36 1 3.1707 -2.8153 -1.5673 37 1 5.2749 -5.8254 -2.2455 38 1 4.5224 -4.3774 -2.9864 39 1 7.2232 -4.5241 -2.3556 40 1 6.3079 -2.9867 -2.3778 41 1 4.9516 -2.5485 -0.1440 42 1 5.1449 -3.8534 1.0663 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133538304.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:47 Heat of formation + Delta-G solvation = -18.610901 kcal Electronic energy + Delta-G solvation = -22127.599609 eV Core-core repulsion = 19072.318811 eV Total energy + Delta-G solvation = -3055.280798 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.66594 -38.60205 -36.44424 -32.85664 -32.19695 -31.07114 -30.61768 -28.98815 -27.13440 -25.53288 -23.84033 -22.48053 -22.25217 -21.25481 -20.28194 -19.70082 -16.71597 -16.24158 -16.10642 -15.49663 -15.12949 -14.96227 -14.72119 -14.57046 -14.00415 -13.55426 -13.43273 -13.14357 -12.88845 -12.57343 -12.30092 -12.15255 -11.87912 -11.55807 -11.10817 -11.09680 -11.01565 -10.85890 -10.74782 -10.61419 -10.51630 -10.29256 -10.01386 -9.77016 -9.39632 -9.26354 -8.61446 -8.46702 -8.27565 -7.33913 -6.05559 -4.06906 1.60190 1.66209 3.31994 3.36312 3.39571 4.01625 4.38907 4.41229 4.77984 5.07326 5.10717 5.14152 5.18716 5.23649 5.30448 5.37989 5.43489 5.50566 5.70335 5.75860 5.77031 5.91289 5.96868 6.01441 6.07754 6.13825 6.18929 6.27386 6.31297 6.34777 6.38697 6.49136 6.68222 6.75332 6.81400 6.94578 7.19493 7.23466 7.25648 7.27989 7.77760 8.04499 8.15667 8.48585 9.00159 9.57428 11.04939 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016409 B = 0.006241 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.930606 B = 4485.645205 C = 5356.467556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.505 4.505 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.528 5.528 11 C 0.086 3.914 12 C -0.057 4.057 13 C -0.121 4.121 14 C -0.125 4.125 15 C -0.130 4.130 16 C -0.122 4.122 17 C -0.095 4.095 18 C 0.073 3.927 19 C -0.128 4.128 20 H 0.097 0.903 21 C -0.151 4.151 22 C 0.047 3.953 23 O -0.388 6.388 24 C 0.065 3.935 25 H 0.262 0.738 26 H -0.012 1.012 27 H 0.034 0.966 28 H 0.033 0.967 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.126 0.874 35 H 0.022 0.978 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.431 -13.466 -0.418 15.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.543 4.543 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.252 5.252 11 C -0.042 4.042 12 C -0.058 4.058 13 C -0.139 4.139 14 C -0.144 4.144 15 C -0.148 4.148 16 C -0.140 4.140 17 C -0.113 4.113 18 C -0.056 4.056 19 C -0.147 4.147 20 H 0.115 0.885 21 C -0.190 4.190 22 C -0.030 4.030 23 O -0.307 6.307 24 C -0.011 4.011 25 H 0.071 0.929 26 H 0.006 0.994 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.097 0.903 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.144 0.856 35 H 0.041 0.959 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.769 -13.210 0.078 15.325 hybrid contribution -0.385 0.770 -0.826 1.193 sum 7.384 -12.440 -0.748 14.486 Atomic orbital electron populations 1.69942 1.06039 1.26906 1.50940 1.24963 0.94829 0.99229 0.95444 0.86597 0.79472 0.82868 0.78713 1.20311 1.21376 1.20121 1.21093 0.93410 0.89785 1.50056 0.91952 1.19779 0.90179 0.87236 0.95893 1.62038 1.27971 1.03293 1.31855 1.21145 0.93825 0.90508 0.98730 1.19987 0.97191 0.94314 0.94268 1.20996 0.98564 0.94712 0.99678 1.21001 0.97937 0.99423 0.95995 1.21026 1.00514 0.97782 0.95510 1.21137 0.98212 0.94752 0.99889 1.21062 0.96252 0.98766 0.95263 1.22103 0.92667 0.99979 0.90852 1.22902 0.95634 1.00993 0.95195 0.88533 1.22960 0.96584 1.00505 0.98928 1.23305 0.97327 0.99159 0.83246 1.89051 1.29497 1.92840 1.19295 1.23365 0.79989 0.99123 0.98662 0.92864 0.99393 0.94832 0.94894 0.90279 0.86722 0.86763 0.86810 0.86522 0.85624 0.95940 0.89926 0.91474 0.90838 0.90094 0.92621 0.91509 0.89473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.10 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.50 -13.60 8.39 -34.44 -0.29 -13.89 16 8 H 0.06 1.67 7.25 -52.49 -0.38 1.29 16 9 C 0.19 4.78 4.71 -4.97 -0.02 4.76 16 10 N -0.53 -10.56 4.18 -237.51 -0.99 -11.55 16 11 C 0.09 1.48 5.19 -4.98 -0.03 1.45 16 12 C -0.06 -0.87 3.58 -104.62 -0.37 -1.24 16 13 C -0.12 -1.64 7.49 -39.58 -0.30 -1.93 16 14 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 15 C -0.13 -1.59 10.05 -39.58 -0.40 -1.99 16 16 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 17 C -0.09 -1.42 9.72 -39.58 -0.38 -1.81 16 18 C 0.07 1.33 3.96 -3.82 -0.02 1.32 16 19 C -0.13 -2.07 2.94 -89.06 -0.26 -2.33 16 20 H 0.10 1.54 3.57 -51.93 -0.19 1.36 16 21 C -0.15 -2.09 6.74 -25.17 -0.17 -2.26 16 22 C 0.05 0.66 7.63 37.93 0.29 0.95 16 23 O -0.39 -6.74 11.65 -35.23 -0.41 -7.16 16 24 C 0.06 1.15 7.03 37.93 0.27 1.41 16 25 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 26 H -0.01 -0.31 8.05 -51.93 -0.42 -0.73 16 27 H 0.03 0.89 7.67 -51.93 -0.40 0.49 16 28 H 0.03 0.54 7.42 -51.93 -0.39 0.16 16 29 H 0.08 1.39 7.62 -51.93 -0.40 0.99 16 30 H 0.11 1.42 7.97 -52.48 -0.42 1.01 16 31 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.11 1.14 8.06 -52.49 -0.42 0.71 16 33 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.13 1.96 8.06 -52.49 -0.42 1.53 16 35 H 0.02 0.40 7.64 -51.93 -0.40 0.00 16 36 H 0.08 1.70 6.84 -51.93 -0.36 1.34 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.96 7.73 -51.93 -0.40 0.56 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 1.30 7.45 -51.93 -0.39 0.92 16 42 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 LS Contribution 335.27 15.07 5.05 5.05 Total: -1.00 -28.92 335.27 -9.85 -38.77 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -6.64 Total: 1.92 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -2.57 Total: -18.02 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: -0.26 Total: -36.91 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.41 Total: -7.16 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.92 -9.85 -38.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133538304.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.159 kcal (2) G-P(sol) polarization free energy of solvation -28.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds