Wall clock time and date at job start Mon Mar 30 2020 01:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 120.00315 * 2 1 4 4 H 1.48496 * 109.47432 * 239.99839 * 3 2 1 5 5 H 1.48500 * 109.47417 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47021 * 119.99753 * 3 2 1 7 7 C 1.37878 * 119.99642 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00174 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00227 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47219 * 184.89307 * 9 7 2 11 11 C 1.46896 * 110.99879 * 164.16506 * 10 9 7 12 12 C 1.50697 * 109.47178 * 201.16899 * 11 10 9 13 13 C 1.38239 * 120.00279 * 249.32237 * 12 11 10 14 14 C 1.38233 * 120.00304 * 179.78299 * 13 12 11 15 15 C 1.38239 * 119.99728 * 0.47157 * 14 13 12 16 16 C 1.38232 * 120.00048 * 359.75598 * 15 14 13 17 17 C 1.38233 * 119.99990 * 69.59636 * 12 11 10 18 18 C 1.46901 * 110.99807 * 288.11839 * 10 9 7 19 19 C 1.53002 * 109.46964 * 156.68550 * 18 10 9 20 20 H 1.09003 * 110.45772 * 54.87265 * 19 18 10 21 21 C 1.54506 * 110.51140 * 177.47823 * 19 18 10 22 22 C 1.54475 * 104.06372 * 118.64289 * 21 19 18 23 23 O 1.44421 * 104.80510 * 23.97883 * 22 21 19 24 24 C 1.44431 * 105.27301 * 319.49151 * 23 22 21 25 25 H 0.97000 * 119.99650 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46798 * 64.89295 * 9 7 2 27 27 H 1.09004 * 109.46971 * 304.89347 * 9 7 2 28 28 H 1.09005 * 109.46978 * 81.17295 * 11 10 9 29 29 H 1.08998 * 109.47579 * 321.17364 * 11 10 9 30 30 H 1.08004 * 119.99433 * 359.97438 * 13 12 11 31 31 H 1.07998 * 120.00155 * 180.25096 * 14 13 12 32 32 H 1.08000 * 119.99923 * 179.79043 * 15 14 13 33 33 H 1.08001 * 120.00462 * 180.02562 * 16 15 14 34 34 H 1.07998 * 119.99962 * 359.97438 * 17 12 11 35 35 H 1.09006 * 109.47143 * 276.68442 * 18 10 9 36 36 H 1.09001 * 109.47257 * 36.68228 * 18 10 9 37 37 H 1.08997 * 110.51475 * 237.29036 * 21 19 18 38 38 H 1.09006 * 110.51219 * 0.02562 * 21 19 18 39 39 H 1.09000 * 110.37576 * 142.81243 * 22 21 19 40 40 H 1.09002 * 110.37910 * 265.03641 * 22 21 19 41 41 H 1.09005 * 110.36516 * 281.67256 * 24 23 22 42 42 H 1.08996 * 110.37127 * 159.34370 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6962 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2012 -3.6133 0.1170 11 6 1.5127 -4.8548 0.4946 12 6 2.5036 -5.8138 1.1023 13 6 2.8602 -6.9629 0.4216 14 6 3.7725 -7.8404 0.9770 15 6 4.3209 -7.5737 2.2176 16 6 3.9608 -6.4270 2.9005 17 6 3.0517 -5.5474 2.3431 18 6 2.9612 -3.7904 -1.1276 19 6 4.2787 -4.5063 -0.8231 20 1 4.0907 -5.4442 -0.3004 21 6 5.0697 -4.7616 -2.1255 22 6 6.3846 -3.9758 -1.9262 23 8 6.5359 -3.8666 -0.4941 24 6 5.2092 -3.5965 0.0090 25 1 -0.4849 0.8401 0.0004 26 1 0.6913 -2.5956 -0.9310 27 1 0.5605 -2.5201 0.8427 28 1 1.0662 -5.3066 -0.3912 29 1 0.7316 -4.6306 1.2210 30 1 2.4283 -7.1735 -0.5457 31 1 4.0542 -8.7361 0.4434 32 1 5.0312 -8.2609 2.6531 33 1 4.3895 -6.2184 3.8696 34 1 2.7701 -4.6517 2.8767 35 1 2.3770 -4.3871 -1.8283 36 1 3.1707 -2.8153 -1.5673 37 1 5.2749 -5.8254 -2.2455 38 1 4.5224 -4.3774 -2.9864 39 1 7.2232 -4.5241 -2.3556 40 1 6.3079 -2.9867 -2.3778 41 1 4.9516 -2.5485 -0.1440 42 1 5.1449 -3.8534 1.0663 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133538304.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:47 Heat of formation + Delta-G solvation = -35.165729 kcal Electronic energy + Delta-G solvation = -22128.317480 eV Core-core repulsion = 19072.318811 eV Total energy + Delta-G solvation = -3055.998669 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.92111 -39.77726 -37.96528 -34.85696 -33.52012 -32.43515 -31.66107 -30.27235 -28.96185 -26.93182 -25.55658 -23.80368 -23.30767 -22.72288 -21.59692 -21.08149 -18.52582 -17.62880 -17.36335 -16.84035 -16.70718 -16.34727 -15.98170 -15.94239 -15.49045 -14.99552 -14.89747 -14.32496 -14.15768 -13.93344 -13.80836 -13.47978 -13.41729 -13.16911 -12.84650 -12.61432 -12.46699 -12.31160 -12.17216 -12.02698 -11.82506 -11.68876 -11.51790 -11.36404 -11.19519 -10.68858 -10.60421 -9.65988 -9.40099 -9.01690 -8.19639 -6.28503 0.54498 0.61948 1.39703 1.41834 1.49651 2.39247 2.91310 3.11808 3.14047 3.36837 3.83001 3.92999 4.00143 4.04223 4.17055 4.24736 4.27642 4.37797 4.44051 4.48845 4.63577 4.70344 4.71041 4.77536 4.83866 4.87258 4.89835 4.93680 5.03606 5.11954 5.17914 5.22055 5.24457 5.28354 5.45014 5.65737 5.68056 5.73216 5.86211 5.93436 6.07371 6.22383 6.38217 6.62588 6.86731 7.40505 8.90597 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016409 B = 0.006241 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.930606 B = 4485.645205 C = 5356.467556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.960 3.040 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.515 4.515 8 H 0.060 0.940 9 C 0.210 3.790 10 N -0.531 5.531 11 C 0.088 3.912 12 C -0.071 4.071 13 C -0.123 4.123 14 C -0.121 4.121 15 C -0.126 4.126 16 C -0.126 4.126 17 C -0.113 4.113 18 C 0.078 3.922 19 C -0.119 4.119 20 H 0.105 0.895 21 C -0.145 4.145 22 C 0.040 3.960 23 O -0.401 6.401 24 C 0.070 3.930 25 H 0.264 0.736 26 H -0.037 1.037 27 H 0.006 0.994 28 H 0.041 0.959 29 H 0.064 0.936 30 H 0.127 0.873 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.133 0.867 34 H 0.106 0.894 35 H 0.032 0.968 36 H 0.055 0.945 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.054 0.946 41 H 0.039 0.961 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.615 -15.418 -1.020 18.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.193 4.193 3 Si 0.785 3.215 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.553 4.553 8 H 0.078 0.922 9 C 0.084 3.916 10 N -0.254 5.254 11 C -0.039 4.039 12 C -0.072 4.072 13 C -0.142 4.142 14 C -0.139 4.139 15 C -0.144 4.144 16 C -0.144 4.144 17 C -0.132 4.132 18 C -0.050 4.050 19 C -0.138 4.138 20 H 0.123 0.877 21 C -0.184 4.184 22 C -0.036 4.036 23 O -0.321 6.321 24 C -0.006 4.006 25 H 0.072 0.928 26 H -0.020 1.020 27 H 0.025 0.975 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.145 0.855 31 H 0.163 0.837 32 H 0.161 0.839 33 H 0.151 0.849 34 H 0.124 0.876 35 H 0.050 0.950 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.129 0.871 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.969 -15.182 -0.529 18.170 hybrid contribution -1.045 1.292 -0.622 1.775 sum 8.923 -13.890 -1.152 16.549 Atomic orbital electron populations 1.70065 1.07538 1.27806 1.51987 1.25799 0.95634 1.02778 0.95064 0.85571 0.78276 0.78624 0.78987 1.19412 1.20817 1.19638 1.21379 0.93414 0.90963 1.49534 0.92213 1.19402 0.90165 0.88745 0.93296 1.61969 1.27019 1.03541 1.32900 1.21120 0.94302 0.89754 0.98753 1.19757 0.97743 0.94907 0.94792 1.21142 0.98834 0.94107 1.00109 1.21363 0.96709 0.99832 0.95993 1.21415 1.00257 0.97431 0.95328 1.21355 0.97557 0.94780 1.00705 1.21027 0.97624 0.98985 0.95566 1.22055 0.93845 0.99042 0.90100 1.22809 0.94005 1.00385 0.96581 0.87704 1.22969 0.95841 1.02008 0.97537 1.23552 0.98740 0.99759 0.81580 1.89033 1.28975 1.92787 1.21285 1.23165 0.80970 0.97889 0.98623 0.92761 1.01970 0.97546 0.94114 0.91736 0.85489 0.83713 0.83890 0.84898 0.87598 0.95004 0.92612 0.89070 0.90111 0.87078 0.92802 0.94230 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.85 13.29 21.45 0.28 -55.57 16 2 C 0.01 0.30 5.46 84.65 0.46 0.76 16 3 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.51 -28.79 8.39 25.60 0.21 -28.57 16 8 H 0.06 3.31 7.25 -2.91 -0.02 3.29 16 9 C 0.21 10.95 4.71 85.56 0.40 11.36 16 10 N -0.53 -22.13 4.18 -905.34 -3.78 -25.91 16 11 C 0.09 3.14 5.19 85.56 0.44 3.58 16 12 C -0.07 -2.14 3.58 -19.87 -0.07 -2.22 16 13 C -0.12 -3.04 7.49 22.27 0.17 -2.88 16 14 C -0.12 -2.51 10.05 22.27 0.22 -2.29 16 15 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 16 C -0.13 -3.09 10.05 22.27 0.22 -2.87 16 17 C -0.11 -3.40 9.72 22.27 0.22 -3.19 16 18 C 0.08 2.90 3.96 86.30 0.34 3.24 16 19 C -0.12 -3.72 2.94 -9.78 -0.03 -3.75 16 20 H 0.11 3.15 3.57 -2.39 -0.01 3.14 16 21 C -0.15 -3.62 6.74 31.61 0.21 -3.41 16 22 C 0.04 1.04 7.63 72.48 0.55 1.59 16 23 O -0.40 -13.38 11.65 -148.98 -1.74 -15.12 16 24 C 0.07 2.48 7.03 72.48 0.51 2.99 16 25 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 26 H -0.04 -2.10 8.05 -2.39 -0.02 -2.12 16 27 H 0.01 0.36 7.67 -2.38 -0.02 0.35 16 28 H 0.04 1.36 7.42 -2.38 -0.02 1.34 16 29 H 0.06 2.42 7.62 -2.39 -0.02 2.40 16 30 H 0.13 2.78 7.97 -2.91 -0.02 2.76 16 31 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 32 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 33 H 0.13 2.74 8.06 -2.91 -0.02 2.71 16 34 H 0.11 3.50 8.06 -2.91 -0.02 3.48 16 35 H 0.03 1.12 7.64 -2.38 -0.02 1.10 16 36 H 0.06 2.37 6.84 -2.39 -0.02 2.35 16 37 H 0.09 1.87 8.14 -2.39 -0.02 1.86 16 38 H 0.08 1.91 7.73 -2.38 -0.02 1.89 16 39 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.04 1.60 7.45 -2.38 -0.02 1.58 16 42 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 Total: -1.00 -63.99 335.27 1.87 -62.12 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.98 Total: 15.97 kcal Atomic # 6 Polarization: -32.15 SS G_CDS: 4.10 Total: -28.06 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -3.50 Total: -81.48 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -1.74 Total: -15.12 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -63.99 1.87 -62.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133538304.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.950 kcal (2) G-P(sol) polarization free energy of solvation -63.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds