Wall clock time and date at job start Mon Mar 30 2020 01:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35897 * 117.00481 * 180.02562 * 11 10 9 13 13 C 1.38821 * 120.01275 * 359.72205 * 12 11 10 14 14 C 1.38173 * 120.08789 * 179.72138 * 13 12 11 15 15 C 1.38157 * 120.13180 * 0.55631 * 14 13 12 16 16 C 1.38929 * 120.03217 * 359.71781 * 15 14 13 17 17 N 1.39666 * 120.04760 * 179.97438 * 16 15 14 18 18 C 1.46504 * 119.99487 * 0.02803 * 17 16 15 19 19 C 1.53004 * 109.47047 * 179.97438 * 18 17 16 20 20 C 1.53787 * 113.61365 * 274.13829 * 19 18 17 21 21 C 1.53949 * 87.01783 * 220.04775 * 20 19 18 22 22 C 1.53780 * 87.11575 * 25.36351 * 21 20 19 23 23 C 1.38564 * 120.02346 * 180.02562 * 12 11 10 24 24 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 26 26 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 27 27 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 28 28 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 29 29 H 1.08000 * 119.95233 * 359.97438 * 13 12 11 30 30 H 1.08007 * 119.93154 * 180.25528 * 14 13 12 31 31 H 1.07998 * 119.98115 * 179.70100 * 15 14 13 32 32 H 0.96996 * 120.00573 * 180.02562 * 17 16 15 33 33 H 1.08998 * 109.47152 * 299.99447 * 18 17 16 34 34 H 1.08998 * 109.47401 * 60.00314 * 18 17 16 35 35 H 1.08999 * 112.85027 * 45.33152 * 19 18 17 36 36 H 1.08999 * 113.61140 * 334.56382 * 20 19 18 37 37 H 1.09000 * 113.61773 * 105.46580 * 20 19 18 38 38 H 1.09005 * 113.53637 * 270.81022 * 21 20 19 39 39 H 1.08999 * 113.66815 * 139.93634 * 21 20 19 40 40 H 1.08994 * 113.61193 * 220.09615 * 22 21 20 41 41 H 1.08993 * 113.69245 * 89.19659 * 22 21 20 42 42 H 1.07998 * 120.06257 * 359.97421 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2706 -6.0395 0.0004 13 6 3.6570 -5.9673 -0.0044 14 6 4.4109 -7.1252 0.0019 15 6 3.7880 -8.3583 0.0013 16 6 2.4010 -8.4367 0.0004 17 7 1.7710 -9.6832 -0.0006 18 6 2.5730 -10.9092 -0.0002 19 6 1.6450 -12.1257 -0.0009 20 6 1.1896 -12.5539 1.4042 21 6 1.3710 -14.0080 0.9322 22 6 2.3897 -13.4686 -0.0857 23 6 1.6419 -7.2743 -0.0007 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5566 0.8902 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8895 29 1 4.1468 -5.0047 -0.0090 30 1 5.4894 -7.0660 0.0023 31 1 4.3797 -9.2618 0.0014 32 1 0.8025 -9.7372 -0.0016 33 1 3.2028 -10.9318 -0.8895 34 1 3.2009 -10.9323 0.8905 35 1 0.8274 -12.0339 -0.7158 36 1 1.8807 -12.2621 2.1950 37 1 0.1552 -12.2919 1.6267 38 1 0.4775 -14.4314 0.4733 39 1 1.8109 -14.6610 1.6860 40 1 2.3226 -13.9439 -1.0642 41 1 3.4099 -13.4269 0.2957 42 1 0.5635 -7.3323 -0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000149511182.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:26 Heat of formation + Delta-G solvation = -10.250820 kcal Electronic energy + Delta-G solvation = -19869.555344 eV Core-core repulsion = 16814.637067 eV Total energy + Delta-G solvation = -3054.918278 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.85982 -39.24911 -37.49924 -34.74834 -33.30936 -30.90119 -30.07822 -28.84639 -27.15037 -25.98960 -24.94667 -23.35706 -22.43853 -21.31882 -20.31288 -19.79291 -17.90181 -16.61408 -16.29245 -15.89864 -15.51855 -15.32269 -15.22749 -14.71753 -14.53778 -14.32588 -14.11661 -13.32276 -12.85964 -12.82497 -12.68180 -12.34919 -12.29834 -12.13860 -11.50323 -11.45410 -11.18374 -10.97500 -10.91389 -10.75723 -10.67692 -10.61764 -10.40139 -9.94109 -9.67606 -9.60908 -9.24651 -8.42663 -7.90047 -7.28392 -6.07676 -4.11848 1.75840 1.91836 3.25588 3.28502 3.35666 3.39681 4.02724 4.15110 4.20764 4.26516 4.32885 4.45044 4.46726 4.90915 5.06070 5.13611 5.28776 5.30010 5.33771 5.36364 5.41089 5.50076 5.53996 5.58497 5.59547 5.66154 5.81968 5.84365 6.06462 6.11762 6.13370 6.16591 6.45493 6.66361 6.71146 6.79688 6.93439 7.43060 7.55918 7.68620 7.72098 7.87087 8.15628 8.28232 8.94124 9.52243 11.04007 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.050929 B = 0.002432 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.655553 B =11512.695446 C =11932.099163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.066 3.934 11 O -0.317 6.317 12 C 0.187 3.813 13 C -0.265 4.265 14 C -0.037 4.037 15 C -0.245 4.245 16 C 0.246 3.754 17 N -0.748 5.748 18 C 0.138 3.862 19 C -0.124 4.124 20 C -0.137 4.137 21 C -0.144 4.144 22 C -0.132 4.132 23 C -0.239 4.239 24 H 0.262 0.738 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.398 0.602 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.399 -26.469 0.609 27.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.008 4.008 11 O -0.229 6.229 12 C 0.139 3.861 13 C -0.285 4.285 14 C -0.056 4.056 15 C -0.268 4.268 16 C 0.143 3.857 17 N -0.379 5.379 18 C 0.014 3.986 19 C -0.143 4.143 20 C -0.174 4.174 21 C -0.181 4.181 22 C -0.170 4.170 23 C -0.262 4.262 24 H 0.072 0.928 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.144 0.856 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.232 0.768 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.178 -26.460 0.610 26.969 hybrid contribution 0.267 1.023 -0.017 1.058 sum 5.445 -25.437 0.593 26.020 Atomic orbital electron populations 1.69993 1.06095 1.26800 1.49938 1.25002 0.94915 0.99399 0.94992 0.86428 0.80001 0.83267 0.77675 1.19627 1.20867 1.20871 1.21022 0.93108 0.90216 1.51896 0.92287 1.19133 0.94224 0.89108 0.98825 1.23308 0.96976 0.80737 0.99750 1.86143 1.36766 1.13304 1.86721 1.18822 0.89867 0.86803 0.90571 1.21145 0.93004 0.99599 1.14773 1.20615 0.98964 0.91479 0.94532 1.20375 0.92249 0.97837 1.16306 1.17368 0.91511 0.84625 0.92150 1.44553 1.08086 1.02105 1.83110 1.21288 0.93590 0.82782 1.00955 1.22791 0.99087 0.93878 0.98533 1.23021 1.01902 0.96031 0.96442 1.22846 0.99523 0.96691 0.99042 1.22866 0.98772 0.95424 0.99891 1.19665 0.99608 0.88919 1.18022 0.92804 0.95438 0.95426 0.93095 0.93102 0.85603 0.86398 0.86782 0.76760 0.92391 0.92331 0.88714 0.89869 0.91398 0.90206 0.91372 0.91262 0.89810 0.85827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.65 5.34 -27.89 -0.15 0.50 16 10 C 0.07 1.48 4.68 37.16 0.17 1.65 16 11 O -0.32 -6.83 10.13 -19.42 -0.20 -7.02 16 12 C 0.19 3.48 6.68 -39.25 -0.26 3.21 16 13 C -0.26 -4.44 9.04 -39.39 -0.36 -4.79 16 14 C -0.04 -0.52 10.03 -39.64 -0.40 -0.92 16 15 C -0.25 -3.27 9.31 -39.36 -0.37 -3.63 16 16 C 0.25 3.40 6.65 -83.81 -0.56 2.84 16 17 N -0.75 -7.87 5.73 -58.65 -0.34 -8.20 16 18 C 0.14 1.14 4.74 -4.04 -0.02 1.12 16 19 C -0.12 -0.81 3.75 -89.80 -0.34 -1.14 16 20 C -0.14 -0.87 7.65 -25.83 -0.20 -1.07 16 21 C -0.14 -0.79 8.09 -25.83 -0.21 -1.00 16 22 C -0.13 -0.73 7.65 -25.92 -0.20 -0.93 16 23 C -0.24 -3.87 9.83 -39.24 -0.39 -4.26 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 1.08 7.67 -51.93 -0.40 0.68 16 28 H 0.05 1.08 7.65 -51.93 -0.40 0.68 16 29 H 0.13 2.08 6.29 -52.49 -0.33 1.75 16 30 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 31 H 0.11 1.27 6.73 -52.49 -0.35 0.91 16 32 H 0.40 3.74 8.48 -40.82 -0.35 3.39 16 33 H 0.06 0.49 7.95 -51.93 -0.41 0.07 16 34 H 0.06 0.49 7.68 -51.93 -0.40 0.09 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.56 7.92 -51.93 -0.41 0.15 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 42 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 345.62 15.07 5.21 5.21 Total: -1.00 -30.81 345.62 -10.10 -40.90 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.81 Total: 0.65 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -3.67 Total: -21.98 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.40 Total: -34.25 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.20 Total: -7.02 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.81 -10.10 -40.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149511182.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.653 kcal (2) G-P(sol) polarization free energy of solvation -30.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds